Gene

KWMTBOMO01193  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014048

Annotation

PREDICTED:_SET_and_MYND_domain-containing_protein_4_[Amyelois_transitella]

Location

Bomo_Chr3(+):4167840-4179215      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.75 Nuclear   Reliability : 1.247

CDS

ATGAGTATAGATGCTTGTTATGAAGGTGTTATTGCCAAATTAACGGATGAGGGTAAAATATTGGAAATTTCTAAGAAACTTATTAGTTTGCAAACAAATTCTGCCAGAGTTCTATTCGTATATGAGTTAATTGAATCTTTGAAAGCTTTTCCCAAAGTATTAGAGGTGAAAAAGGATGACAATGTGTCAACTTATTACCGTAACCAAGGCAACCTATTTTTTAAAGCAACTCAAAATTATGAAGCCTTACAGTTTTATAATTTGTCTTTGATACATGCACCATTGGGCACAGAGAGTTACAGTCTTGCTTTAGCCAATAGATCAGCAGTATTATTTTCGATGAAACAATATGATGAATGTATACATGATATTGATACTGTTTTTGCTATGGAATATCCGCGTGATCTAGAAAAGAAACTAAGCAAAAGGAAATCTATGTGTGAAAATTTTATATTAAAAAATAAGGAAGTAAAAGAAGACAGCACAAAAGCTAATTTCCAAGTAGCTCAAAATTACAAGTTGTTTTTAATGACGAAATGGGCCGACATGTTGTGGCTAAAGAAGATATTCAGCAAAGAATGTTCAGAAAAGGCATGGAAAGAATATCACAGAGTTGAATGTGGTTTATTAGCCACATTGGTGCATATGGAGTTTACTAAACTAGAGTTGTTGGCTCTCAGAATAGTTATAAGGGCCCGCACAGACCATAAGAATTGGCCAGAATTGTTGGAAAAATTAGTGGAGATTGAAAAAAATTTAAATACACCTTTGCGAGGATGTGAAAATTTGGGAGATAATTGGGTGTATGATTCAAAGTATTATGCTTCAATACATACACTTGAATCAAATGTGGAGAAGAGATCTGTATCGGATATTTTTCAAAAATCCATTACTGCAGCTGTATTTCTAAAATTCCTTATTGAAAATACTGATTTTATGAATGCTGATGACGCAAAACATCACAACCGGATAAAGAACTGGGTGGCTGGCACATTATTACTTCATGGCATGACTAGCCCCACTAACATGCATGGTATAATAACTAACACAGCCAACAAGAATGGAGATTATGTTGATGAACTAAACATTGGTAGTGCACCATATCCATTTTGTAGTTTGATAAATCATTCATGTGCACCAAATGTGGTCAGATATAGTAAGTTGGGCTTTGCTGAACAGATCTTGGTTGCATTGAGACCTATTAAGAAGGGTATGCAGATTTTTGACAATTATGGATCCCATTATGCAATAGAAGGCCGTCGGAGCAGACAGGAATCTCTTAAGTTCCAATACAAATTTGTTTGCGGCTGTGAAGCCTGCATAAACAACTGGCCTACTTACTTGGAAATGAGAAGGAGTAAAAATGTACCTGTTCAAATACAAAAAAGAAAAAATAAATTGTTAGATGCAAATGCTATTAATAAACTACAAAAGGGCGATAAGGGAACAGCTTTGAAATTGTTGAAGCCTCTTTGTGAACTGATGGAGCTACTTGAGCCATATTGCCCATGTTTAGAACTTGCAGATTGTCAGGAATCTTTCAAGCAGTGCCTTGCTATATGTGAGGGAGTTGTGCCTTACGGTAAGCTAATTGAATGGAATGCAATTCCACCAAAAGTTAAGTGA

Protein

MSIDACYEGVIAKLTDEGKILEISKKLISLQTNSARVLFVYELIESLKAFPKVLEVKKDDNVSTYYRNQGNLFFKATQNYEALQFYNLSLIHAPLGTESYSLALANRSAVLFSMKQYDECIHDIDTVFAMEYPRDLEKKLSKRKSMCENFILKNKEVKEDSTKANFQVAQNYKLFLMTKWADMLWLKKIFSKECSEKAWKEYHRVECGLLATLVHMEFTKLELLALRIVIRARTDHKNWPELLEKLVEIEKNLNTPLRGCENLGDNWVYDSKYYASIHTLESNVEKRSVSDIFQKSITAAVFLKFLIENTDFMNADDAKHHNRIKNWVAGTLLLHGMTSPTNMHGIITNTANKNGDYVDELNIGSAPYPFCSLINHSCAPNVVRYSKLGFAEQILVALRPIKKGMQIFDNYGSHYAIEGRRSRQESLKFQYKFVCGCEACINNWPTYLEMRRSKNVPVQIQKRKNKLLDANAINKLQKGDKGTALKLLKPLCELMELLEPYCPCLELADCQESFKQCLAICEGVVPYGKLIEWNAIPPKVK

Uniprot

A0A0N1I8M4   A0A0L7L8A6   A0A0L7L9B5   A0A194QH29   A0A2A4K7Z8   A0A2W1BMY6   + More
A0A2H1WIT8   A0A0M5IXX9   B4J5F8   A0A151X612   B3MH29   B4KPV8   B3NS83   B4LKU5   A0A154P1E3   A0A0J9TZB5   B4HNY0   Q28XZ1   B4GH86   Q7KMH5   A0A3B0JLA9   A0A0A1XT08   A0A139WCQ9   B4P5P3   A0A0L0C194   L0CR21   L0CP86   L0CP31   L0CQD5   L0CR15   L0CP93   A0A0K8UL29   L0CPB0   W8B7G3   L0CP19   L0CP25   L0CQR4   L0CQT0   L0CP48   L0CQE1   L0CQF8   A0A0L7RBW9   A0A1Q3FCS2   B0WHZ1   R7T4C3   V4ATR0   A0A336MLV9   E0VDY8   U4U820   A0A182Y9B6   A0A151IF32   A0A182R8T1   A0A2T7PJX0   A0A084WIT6   A0A182GZU9   A0A182IZ54   B4QC82   A0A182QZT0   A0A182PX13   Q7PZC2   A0A1B0CK72   B0WI29   A0A1J1J2D0   A0A336LV57   A0A1J1HU05   A0A182LV99  

Pubmed

26354079    26227816    28756777    17994087    22936249    15632085    + More
10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25830018    18362917    19820115    17550304    26108605    22997235    24495485    23254933    20566863    23537049    25244985    24438588    26483478    12364791   

EMBL

KQ460366    KPJ15627.1    JTDY01002367    KOB71564.1    JTDY01002104    KOB72103.1    + More
KQ458860    KPJ04817.1    NWSH01000061    PCG80058.1    KZ149958    PZC76419.1    ODYU01008956    SOQ52985.1    CP012524    ALC42206.1    CH916367    EDW00721.1    KQ982494    KYQ55708.1    CH902619    EDV35788.1    CH933808    EDW10235.1    CH954179    EDV56385.1    CH940648    EDW60749.1    KQ434796    KZC05759.1    CM002911    KMY93095.1    CH480816    EDW47495.1    CM000071    EAL26175.1    CH479183    EDW35856.1    AF145692    AE013599    AAD38667.1    AAF58578.1    OUUW01000001    SPP74279.1    GBXI01000232    JAD14060.1    KQ971363    KYB25712.1    CM000158    EDW90840.1    JRES01001139    KNC25224.1    KC115909    AGA18631.1    KC115900    AGA18622.1    KC115901    KC115907    AGA18623.1    AGA18629.1    KC115899    KC115903    AGA18621.1    AGA18625.1    KC115904    AGA18626.1    KC115905    AGA18627.1    GDHF01025068    GDHF01004323    JAI27246.1    JAI47991.1    KC115898    KC115910    AGA18620.1    AGA18632.1    GAMC01013587    JAB92968.1    KC115897    AGA18619.1    KC115902    AGA18624.1    KC115906    AGA18628.1    KC115911    AGA18633.1    KC115912    AGA18634.1    KC115908    AGA18630.1    KC115913    AGA18635.1    KQ414617    KOC68328.1    GFDL01009726    JAV25319.1    DS231941    EDS28073.1    AMQN01015657    KB312122    ELT87827.1    KB201324    ESO97141.1    UFQS01001435    UFQT01001435    SSX10873.1    SSX30551.1    DS235088    EEB11594.1    KB632155    ERL89202.1    KQ977808    KYM99519.1    PZQS01000003    PVD33736.1    ATLV01023946    KE525347    KFB50130.1    JXUM01022095    JXUM01022096    KQ560621    KXJ81572.1    CM000362    EDX06713.1    AXCN02001095    AAAB01008986    EAA00753.4    AJWK01015852    AJWK01015853    EDS28111.1    CVRI01000066    CRL05940.1    UFQT01000128    SSX20579.1    CVRI01000021    CRK91552.1    AXCM01004284   

Proteomes

UP000053240    UP000037510    UP000053268    UP000218220    UP000092553    UP000001070    + More
UP000075809    UP000007801    UP000009192    UP000008711    UP000008792    UP000076502    UP000001292    UP000001819    UP000008744    UP000000803    UP000268350    UP000007266    UP000002282    UP000037069    UP000053825    UP000002320    UP000014760    UP000030746    UP000009046    UP000030742    UP000076408    UP000078542    UP000075900    UP000245119    UP000030765    UP000069940    UP000249989    UP000075880    UP000000304    UP000075886    UP000075885    UP000007062    UP000092461    UP000183832    UP000075883   

PRIDE

Q7KMH5    L0CP19   

Pfam

PF00856   SET        + More
PF01753   zf-MYND
PF02872   5_nucleotid_C
PF01423   LSM
PF00107   ADH_zinc_N
PF08240   ADH_N
PF00043   GST_C

Interpro

IPR002893   Znf_MYND        + More
IPR011990   TPR-like_helical_dom_sf       
IPR001214   SET_dom       
IPR008334   5'-Nucleotdase_C       
IPR006146   5'-Nucleotdase_CS       
IPR036907   5'-Nucleotdase_C_sf       
IPR029052   Metallo-depent_PP-like       
IPR006179   5_nucleotidase/apyrase       
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR001163   LSM_dom_euk/arc       
IPR034103   Lsm8       
IPR010920   LSM_dom_sf       
IPR020843   PKS_ER       
IPR013154   ADH_N       
IPR036282   Glutathione-S-Trfase_C_sf       
IPR004046   GST_C       
IPR011032   GroES-like_sf       
IPR013149   ADH_C       
IPR010987   Glutathione-S-Trfase_C-like       
IPR036291   NAD(P)-bd_dom_sf       

SUPFAM

SSF48452   SSF48452        + More
SSF55816   SSF55816       
SSF50182   SSF50182       
SSF47616   SSF47616       
SSF51735   SSF51735       
SSF50129   SSF50129       

Gene 3D

1.25.40.10     3.60.21.10     3.90.780.10    

CDD

cd01727  LSm8

ProteinModelPortal

A0A0N1I8M4   A0A0L7L8A6   A0A0L7L9B5   A0A194QH29   A0A2A4K7Z8   A0A2W1BMY6   + More
A0A2H1WIT8   A0A0M5IXX9   B4J5F8   A0A151X612   B3MH29   B4KPV8   B3NS83   B4LKU5   A0A154P1E3   A0A0J9TZB5   B4HNY0   Q28XZ1   B4GH86   Q7KMH5   A0A3B0JLA9   A0A0A1XT08   A0A139WCQ9   B4P5P3   A0A0L0C194   L0CR21   L0CP86   L0CP31   L0CQD5   L0CR15   L0CP93   A0A0K8UL29   L0CPB0   W8B7G3   L0CP19   L0CP25   L0CQR4   L0CQT0   L0CP48   L0CQE1   L0CQF8   A0A0L7RBW9   A0A1Q3FCS2   B0WHZ1   R7T4C3   V4ATR0   A0A336MLV9   E0VDY8   U4U820   A0A182Y9B6   A0A151IF32   A0A182R8T1   A0A2T7PJX0   A0A084WIT6   A0A182GZU9   A0A182IZ54   B4QC82   A0A182QZT0   A0A182PX13   Q7PZC2   A0A1B0CK72   B0WI29   A0A1J1J2D0   A0A336LV57   A0A1J1HU05   A0A182LV99  

PDB

5ARG     E-value=4.45898e-06,     Score=122

KEGG

101742348    no KO assigned | (RefSeq) SET and MYND domain-containing protein 4

GO

GO:0005737   GO:0005634   GO:0042051   GO:0010629   GO:0042826   GO:0000166   GO:0008253   GO:0046872   GO:0006196   GO:0005886   GO:0046540   GO:0005688   GO:0000398   GO:0016491   GO:0005515   GO:0006559   GO:0006570   GO:0051287   GO:0006000   GO:0004553   GO:0006334   GO:0003779   GO:0016021  

PANTHER

PTHR11575  

Length:

541

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06289

Exp number, first 60 AAs:

0.00067

Total prob of N-in:

0.00411

outside

1  -  541

 

 

Pi

315.277636

Theta

187.650329

Tajima's D

0.566257

CLR

1.43243

CSRT

0.537573121343933

Interpretation

Uncertain