Gene

KWMTBOMO01188  Validated by peptides from experiments

Annotation

PREDICTED:_probable_histone-binding_protein_Caf1_[Bombyx_mori]

Location

Bomo_Chr3(+):4084460-4089891      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.925 Nuclear   Reliability : 2.523

CDS

ATGGGAGATAAAGGAGACGGAGAAACCTTCGATGACGCGGTTGAAGAGAGAGTAATCAACGAAGAATATAAAATATGGAAGAAAAATACACCATTTCTGTACGACTTGGTGATGACCCATGCACTGGAGTGGCCCTCGCTCACTGCCCAGTGGCTCCCCGATGTCACCAGGCCAGACGGAAAGGATTATTCCGTACACAGACTTATCTTAGGAACACACACATCTGATGAACAGAATCACTTGCTGATCGCCAGTGTGCAACTACCTAATGAAGATGCACAATTTGATGCCAGCCATTATGATAATGATAAAGGAGAATTTGGAGGCTTTGGTTCTGTATCAGGCAAGATTGATATAGAAATTAAGATCAACCATGAAGGTGAAGTGAACAGGGCCCGCTACATGCCCCAGAATCCTTGCGTCATCGCAACGAAGACGCCGTCGTCTGATGTACTTGTCTTTGATTATACAAAGCACCCCTCCAAACCTGAGCCTTCTGGAGAGTGCCATCCTGATCTAAGATTGCGTGGTCATCAAAAAGAAGGTTATGGCTTGTCATGGAATCCAAACCTTAATGGATATCTTTTATCAGCCAGTGATGATCATACAATCTGCCTGTGGGACATCAACGCGACGCCAAAGGAGGGGCGGGTCATCGAAGCGAAGTCCGTGTTCACCGGCCACACGGCCGTCGTCGAGGACGTCGCGTGGCACTTGCTACACGAGTCGCTCTTCGGATCCGTGGCTGACGACCAGAAACTGATGATATGGGACACCAGATGTAATAATACATCGAAACCATCTCACACAGTGGACGCACACACCGCTGAAGTTAACTGCCTCAGTTTCAATCCCTATTCAGAGTTCATTCTTGCTACTGGCAGTGCGGATAAAACGGTTGCGCTTTGGGATCTACGCAATTTGAAATTAAAGCTACACTCGTTCGAGTCGCACAAAGACGAAATATTCCAAGTACAATGGTCGCCACACAACGAAACTATTCTCGCGAGCAGTGGTACCGACCGAAGACTCCATGTATGGGACTTGTCAAAGATTGGCGAGGAACAGACAGCTGAAGATGCAGAAGATGGACCCCCAGAATTATTGTTCATACATGGAGGACACACCGCTAAGATATCTGACTTCTCATGGAACCCTAATGAACCATGGGTCATCTGTTCCGTCTCTGAGGATAACATTATGCAGGTGTGGCAGATGGCTGAGAACATCTACAACGACGAGGAGCCGGAGACGCCGGCGTCGGAGTTAGAGTCGGCCGTCAACGTCAACCACGGCTAG

Protein

MGDKGDGETFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEGRVIEAKSVFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRCNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQTAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPETPASELESAVNVNHG

Uniprot

A0A2A4JDT2   S4NU19   A0A0N0PD62   A0A212F465   A0A2J7PDJ0   A0A067QSC6   + More
A0A347ZJD1   U5EW93   A0A0C9QSF1   A0A1B6LW56   A0A1B6F3K3   A0A1B6J9A2   A0A232EQV9   A0A0J7KFU4   E2BIW0   Q16UI5   A0A1Q3FW07   A0A347ZJF9   A0A1B0ETI7   T1JFL0   A0A2A3E1R2   A0A087ZTF4   A0A023ES40   A0A0P4WCW5   A0A1L7N286   A0A0P5A3S5   A0A1B6CY63   A0A3L8DL43   K7J908   A0A1Y1LVA5   A0A1L8DVP0   A0A151I1A2   A0A158NG47   A0A151XBA5   A0A195CJX1   A0A182UMB8   A0A195F0Y6   A0A0N7ZF88   A0A195E7D5   F4WTP5   D6WUS4   A0A158NG46   E9GWI6   A0A0P5V197   A0A182T4P6   A0A182N5A0   A0A182JNU9   A0A084WSM8   A0A182LCH5   A0A182XE14   Q7QBC9   A0A182HJA8   A0A0P4WH16   A0A0P5V603   A0A154P7M4   A0A182QC75   A0A182YM35   E0VKQ8   A0A182RIX4   A0A182PE52   A0A2P2IAN4   A0A0P4WIR9   A0A224XCU6   A0A0V0G663   A0A336LPR0   A0A0P4Z4S5   A0A0P5UY03   A0A069DTI9   A0A0P4VUC3   T1IG97   A0A310SBB8   A0A182UFD7   A0A0L7R504   A0A0P5WUR9   A0A2M4ANJ0   J3JTN9   W5J4Z6   A0A182FSK2   A0A182M695   E9J5Q1   A0A182VQR8   A0A023F5W0   A0A0P6FTD6   A0A0P6HLH5   A0A0A9YCN2   A0A0A9Y9J8   A0A0N0U2N9   A0A0T6AVX4   A0A0K8VNV7   A0A034WI31   A0A0P6FKR6   A0A0P6JNR7   A0A0A1XPP4   W8C514   A0A2W1BT92   A0A0P5W0U3   A0A1W4VN02   A0A1W4VZI3   Q294C5   A0A0R1E7F5  

Pubmed

23622113    26354079    22118469    24845553    28648823    20798317    + More
17510324    24945155    26483478    27956627    30249741    20075255    28004739    21347285    21719571    18362917    19820115    21292972    24438588    20966253    12364791    14747013    17210077    25244985    20566863    26334808    27129103    22516182    23537049    20920257    23761445    21282665    25474469    25401762    26823975    25348373    25830018    24495485    28756777    15632085    17994087    17550304   

EMBL

NWSH01001823    PCG69999.1    GAIX01011991    JAA80569.1    KQ460366    KPJ15621.1    + More
AGBW02010442    OWR48512.1    NEVH01026386    PNF14393.1    KK853353    KDR08226.1    FX985699    BBA84437.1    GANO01001530    JAB58341.1    GBYB01003587    JAG73354.1    GEBQ01012074    JAT27903.1    GECZ01024927    JAS44842.1    GECU01011978    JAS95728.1    NNAY01002688    OXU20769.1    LBMM01008195    KMQ89066.1    GL448535    EFN84392.1    CH477621    EAT38195.1    EAT38196.1    GFDL01003413    JAV31632.1    FX985727    BBA84465.1    AJWK01006428    JH432174    KZ288492    PBC25196.1    JXUM01000649    GAPW01001566    KQ560109    JAC12032.1    KXJ84474.1    GDRN01062262    JAI65098.1    LC100107    BAW19572.1    GDIP01208891    JAJ14511.1    GEDC01018898    JAS18400.1    QOIP01000006    RLU21160.1    GEZM01048974    JAV76230.1    GFDF01003586    JAV10498.1    KQ976580    KYM79959.1    ADTU01014962    ADTU01014963    KQ982335    KYQ57662.1    KQ977721    KYN00369.1    KQ981864    KYN34138.1    GDIP01251233    JAI72168.1    KQ979568    KYN21006.1    GL888341    EGI62466.1    KQ971363    EFA09060.1    GL732570    EFX76181.1    GDIP01107051    LRGB01000687    JAL96663.1    KZS17028.1    ATLV01026626    KE525415    KFB53222.1    AAAB01008879    EAA08393.3    APCN01002135    GDRN01062263    JAI65097.1    GDIP01104453    JAL99261.1    KQ434831    KZC07843.1    AXCN02000148    DS235250    EEB13964.1    EEB13965.1    IACF01005486    LAB71071.1    GDIP01254722    JAI68679.1    GFTR01006209    JAW10217.1    GECL01002553    JAP03571.1    UFQT01000100    SSX19920.1    GDIP01219440    JAJ03962.1    GDIP01107050    JAL96664.1    GBGD01001516    JAC87373.1    GDKW01000458    JAI56137.1    ACPB03003159    ACPB03003160    KQ761783    OAD57027.1    KQ414654    KOC65928.1    GDIP01081406    JAM22309.1    GGFK01009033    MBW42354.1    APGK01056999    BT126596    KB741277    KB631850    AEE61560.1    ENN71236.1    ERL86699.1    ADMH02002074    ETN59552.1    AXCM01001496    GL768174    EFZ11851.1    GBBI01002147    JAC16565.1    GDIQ01045475    GDIQ01043315    JAN51422.1    GDIQ01040880    GDIQ01037778    JAN53857.1    GBHO01014741    GDHC01000563    JAG28863.1    JAQ18066.1    GBHO01014740    GDHC01019329    JAG28864.1    JAP99299.1    KQ435989    KOX67678.1    LJIG01022720    KRT79067.1    GDHF01011735    JAI40579.1    GAKP01003756    JAC55196.1    GDIQ01055971    JAN38766.1    GDIQ01043161    GDIQ01002184    JAN92553.1    GBXI01015481    GBXI01001482    JAC98810.1    JAD12810.1    GAMC01005144    GAMC01005142    JAC01412.1    KZ149958    PZC76427.1    GDIP01092496    JAM11219.1    CM000070    EAL29039.1    CM000160    KRK03777.1   

Proteomes

UP000218220    UP000053240    UP000007151    UP000235965    UP000027135    UP000215335    + More
UP000036403    UP000008237    UP000008820    UP000092461    UP000242457    UP000005203    UP000069940    UP000249989    UP000279307    UP000002358    UP000078540    UP000005205    UP000075809    UP000078542    UP000075903    UP000078541    UP000078492    UP000007755    UP000007266    UP000000305    UP000076858    UP000075901    UP000075884    UP000075881    UP000030765    UP000075882    UP000076407    UP000007062    UP000075840    UP000076502    UP000075886    UP000076408    UP000009046    UP000075900    UP000075885    UP000015103    UP000075902    UP000053825    UP000019118    UP000030742    UP000000673    UP000069272    UP000075883    UP000075920    UP000053105    UP000192221    UP000001819    UP000002282   

Pfam

PF12265   CAF1C_H4-bd        + More
PF00400   WD40
PF10609   ParA
PF00132   Hexapep

Interpro

IPR001680   WD40_repeat        + More
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR022052   Histone-bd_RBBP4_N       
IPR020472   G-protein_beta_WD-40_rep       
IPR019591   Mrp/NBP35_ATP-bd       
IPR027417   P-loop_NTPase       
IPR033756   YlxH/NBP35       
IPR000808   Mrp_CS       
IPR011004   Trimer_LpxA-like_sf       
IPR001451   Hexapep       
IPR002347   SDR_fam       
IPR036291   NAD(P)-bd_dom_sf       

SUPFAM

SSF50978   SSF50978        + More
SSF52540   SSF52540       
SSF51161   SSF51161       
SSF51735   SSF51735       

Gene 3D

2.130.10.10    

CDD

cd02037  MRP-like

ProteinModelPortal

A0A2A4JDT2   S4NU19   A0A0N0PD62   A0A212F465   A0A2J7PDJ0   A0A067QSC6   + More
A0A347ZJD1   U5EW93   A0A0C9QSF1   A0A1B6LW56   A0A1B6F3K3   A0A1B6J9A2   A0A232EQV9   A0A0J7KFU4   E2BIW0   Q16UI5   A0A1Q3FW07   A0A347ZJF9   A0A1B0ETI7   T1JFL0   A0A2A3E1R2   A0A087ZTF4   A0A023ES40   A0A0P4WCW5   A0A1L7N286   A0A0P5A3S5   A0A1B6CY63   A0A3L8DL43   K7J908   A0A1Y1LVA5   A0A1L8DVP0   A0A151I1A2   A0A158NG47   A0A151XBA5   A0A195CJX1   A0A182UMB8   A0A195F0Y6   A0A0N7ZF88   A0A195E7D5   F4WTP5   D6WUS4   A0A158NG46   E9GWI6   A0A0P5V197   A0A182T4P6   A0A182N5A0   A0A182JNU9   A0A084WSM8   A0A182LCH5   A0A182XE14   Q7QBC9   A0A182HJA8   A0A0P4WH16   A0A0P5V603   A0A154P7M4   A0A182QC75   A0A182YM35   E0VKQ8   A0A182RIX4   A0A182PE52   A0A2P2IAN4   A0A0P4WIR9   A0A224XCU6   A0A0V0G663   A0A336LPR0   A0A0P4Z4S5   A0A0P5UY03   A0A069DTI9   A0A0P4VUC3   T1IG97   A0A310SBB8   A0A182UFD7   A0A0L7R504   A0A0P5WUR9   A0A2M4ANJ0   J3JTN9   W5J4Z6   A0A182FSK2   A0A182M695   E9J5Q1   A0A182VQR8   A0A023F5W0   A0A0P6FTD6   A0A0P6HLH5   A0A0A9YCN2   A0A0A9Y9J8   A0A0N0U2N9   A0A0T6AVX4   A0A0K8VNV7   A0A034WI31   A0A0P6FKR6   A0A0P6JNR7   A0A0A1XPP4   W8C514   A0A2W1BT92   A0A0P5W0U3   A0A1W4VN02   A0A1W4VZI3   Q294C5   A0A0R1E7F5  

PDB

3C9C     E-value=0,     Score=2073

KEGG

101735512    K10752 histone-binding protein RBBP4 | (RefSeq) probable histone-binding protein Caf1

GO

GO:0005634   GO:0005524   GO:0004402   GO:0003743   GO:0005515   GO:0016020   GO:0004888   GO:0051287   GO:0006000   GO:0004553   GO:0006334   GO:0003779   GO:0016021  

Subcellular location

Nucleus  

Length:

432

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00171

Exp number, first 60 AAs:

0.00171

Total prob of N-in:

0.00271

outside

1  -  432

 

 

Pi

220.467447

Theta

190.760001

Tajima's D

0.389878

CLR

0.223478

CSRT

0.47937603119844

Interpretation

Uncertain