SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01182  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007490
Annotation
PREDICTED:_glyceraldehyde-3-phosphate_dehydrogenase_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr3(+):4011450-4013566      View in EpiBrowser
Full name
Glyceraldehyde-3-phosphate dehydrogenase      
Location in the cell
Cytoplasmic   Reliability : 4.244
 

Sequence

CDS
ATGTCAAAAATTGGAATCAATGGATTTGGCCGCATTGGCCGTTTGGTGCTCCGTGCTTCTATTGAAAAGGGAGCTCAAGTGGTCGCTATAAATGACCCTTTCATCGGTCTTGACTATATGGTTTATCTTTTCAAGTATGATTCCACCCATGGCCGTTTTAAGGGCAGTGTTGAGGTTCAGGATGGATTCCTTGTTGTTAACGGTAACAAAATTGCCGTTTTCTCAGAAAGGGACCCTAAGGCCATTCCATGGGGAAAAGCTGGGGCTGAATATGTTGTAGAGTCTACTGGTGTCTTTACCACTACAGATAAAGCATCTGCTCACTTGGAGGGAGGTGCTAAAAAAGTTATTATATCAGCTCCCAGTGCTGATGCCCCCATGTTTGTTGTGGGTGTTAACCTAGAAGCTTATGACCCCTCTTTTAAGGTCATCTCAAATGCTTCTTGCACCACAAACTGTCTTGCCCCACTTGCAAAGGTTATTCATGATAACTTTGAAATTGTTGAGGGCTTGATGACTACTGTTCATGCCACAACTGCTACACAGAAAACTGTTGATGGACCTTCTGGAAAATTATGGCGTGATGGCCGTGGTGCTCAACAAAACATCATTCCTGCCTCTACTGGTGCTGCCAAAGCTGTGGGTAAGGTTATCCCTGCTCTTAATGGCAAGCTGACTGGAATGGCATTCCGCGTCCCTGTTGCTAATGTATCTGTTGTTGATCTAACTGTTCGTCTTGGAAAACCTGCAAGCTATGAAGCCATCAAGCAAAAGGTCAAGGAGGCAGCTGAAGGTCCTTTGAAGGGCATTCTCGGGTATACTGAAGATCAAGTTGTGTCCTCAGACTTCATTGGTGATTCACACTCTTCAATCTTTGATGCTGCCGCTGGAATTTCTTTGAATGACAACTTTGTGAAGCTGATCAGTTGGTACGACAATGAATATGGTTATTCCAGCAGAGTCATTGATCTCATCAAGTACATTCAATCTAAAGATTAA
Protein
MSKIGINGFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD

Summary

Catalytic Activity
D-glyceraldehyde 3-phosphate + NAD(+) + phosphate = 3-phospho-D-glyceroyl phosphate + H(+) + NADH
Subunit
Homotetramer.
Similarity
Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
Feature
chain  Glyceraldehyde-3-phosphate dehydrogenase
Uniprot
Q1EPM0   Q3HR37   A0A385AAY7   I4DM65   A0A0N1IPH1   A0A385AAZ4   + More
I4DIT9   A0A385AB04   A0A1W5LB28   A0A221SMS5   A0A385AAY1   A0A385AAZ6   A0A385AAZ1   A0A212EJK4   A0A385AAZ8   A0A2A4JJ10   A0A0K0KFC7   A0A3B0E5Z2   A0A2W1BMY7   A0A385AB02   A0A0B5L5W1   S4NXR5   A0A0K2CTV2   A0A385AAY9   E7D2J4   M4Q0P2   A0A2Z5SVU8   A0A2H4WW83   F5BYH8   A0A125RM77   A0A385AAZ0   Q8MPI0   A0A0A7BYG7   A0A1W5TA01   A0A291FJ95   A0A385AB01   D7RFH6   A0A1B1LYT6   A0A0N0U4U4   E9INY0   E2ABQ6   A0A195E403   Q2VEV8   Q2VEU6   G3FP80   F4WH18   A0A0J7L8Z8   E2BXU6   Q2VEV6   R4J9E2   M9V879   A0A195EW11   Q5XXS6   A0A026WZ24   A0A1D1YHK1   A0A1B6DD01   R4J9F1   A0A286NL55   A0A195CAP2   A0A1B6DRP0   A0A0A7DNR4   A0A151XI19   Q6PPI3   A0A2R3WIG9   A0A1B6MJA5   A0A2L1GU70   A0A232FB79   K7IWP0   A0A2P0XIG5   A0A1B6LSM4   A0A1B6LLG5   A0A182MLS4   A0A182Q0I6   Q4PP91   A0A059XPP2   A0A2H8TRR6   J9K9Z1   G3LSZ8   A0A182NB09   A0A182VTT5   A0A2J7Q5L9   A0A1L8E2B2   A0A182Y8D6   A0A182P826   A0A182RCD4   A0A385AB10   A0A1B0DM89   A0A0T6AWP1   A8CWA4   A0A182K9L4   A0A385AAZ3   A0A182L624   Q7Q1U8   A0A0C5QRW7   G8CV15   A0A084VNI6   U5EWU0   A0A182XCF6   A0A182VLS6   A0A182TTA1  
EC Number
1.2.1.12
1.2.1.-
Pubmed
17966127    19121390    22651552    26354079    22118469    28756777    + More
23622113    26263512    21510953    23467826    21452889    12161563    27392023    21282665    20798317    16292000    21719571    24508170    30249741    25461610    28648823    20075255    24810421    25244985    18194529    20966253    12364791    14747013    17210077    25702953    22028913    24438588   
EMBL
BABH01036311    AB262581    BAE96011.1    DQ202316    ABA43638.2    MH592947    + More
AXL66199.1    AK402383    BAM19005.1    KQ460366    KPJ15615.1    MH592954    AXL66206.1    AK401207    KQ458860    BAM17829.1    KPJ04805.1    MH592958    AXL66210.1    KT991373    ANA75039.1    KX668532    ASN77688.1    MH592946    AXL66198.1    MH592953    AXL66205.1    MH592945    AXL66197.1    AGBW02014444    OWR41655.1    MH592957    AXL66209.1    NWSH01001219    PCG72085.1    KF513153    AII15788.1    RBVL01000188    RKO10926.1    KZ149958    PZC76432.1    MH592955    AXL66207.1    KM923789    AJG43848.1    GAIX01012052    JAA80508.1    KT218670    ALA09390.1    MH592956    AXL66208.1    HQ012003    ADV03159.2    KC262638    ODYU01010341    AGH14258.1    SOQ55375.1    LC328973    BBA78420.1    KY514089    AUD12120.1    JF417983    AEB26314.1    KT361883    AMD40298.1    MH592950    AXL66202.1    AJ489521    CAD33827.1    KC966942    AHV85216.1    KY856799    ARF19869.1    KY039974    ATG34153.1    MH592952    AXL66204.1    HM055756    ADH51733.1    KU664394    ANS59104.1    KQ435819    KOX72508.1    GL764397    EFZ17694.1    GL438334    EFN69158.1    KQ979701    KYN19594.1    DQ205077    DQ205078    DQ205079    DQ205081    DQ205082    DQ205083    DQ205084    DQ205085    DQ205086    DQ205087    DQ205088    DQ205089    ABB90008.1    ABB90009.1    ABB90010.1    ABB90012.1    ABB90013.1    ABB90014.1    ABB90015.1    ABB90016.1    ABB90017.1    ABB90018.1    ABB90019.1    ABB90020.1    DQ205090    DQ205091    ABB90021.1    ABB90022.1    JF751029    AEO51762.1    GL888148    EGI66497.1    LBMM01000207    KMR04485.1    GL451314    EFN79503.1    DQ205080    ABB90011.1    JX273239    AGJ71764.1    KC161214    AGJ76542.1    KQ981954    KYN32082.1    AY725786    AAU95199.1    KK107061    QOIP01000014    EZA61310.1    RLU15006.1    GDJX01013818    JAT54118.1    GEDC01013762    JAS23536.1    JX273237    AGJ71762.1    KX809577    ASZ69798.1    KQ978072    KYM97266.1    GEDC01009025    JAS28273.1    KM267029    AIU97795.1    KQ982112    KYQ59965.1    AY588063    AAT01075.1    MG775273    AVQ67919.1    GEBQ01003930    JAT36047.1    KY435907    AVD73294.1    NNAY01000522    OXU27872.1    KY661337    AVA17424.1    GEBQ01013368    JAT26609.1    GEBQ01015481    JAT24496.1    AXCM01002493    AXCN02000647    DQ062222    AAY63977.1    KJ612091    AIA25511.1    GFXV01005099    MBW16904.1    ABLF02010432    JN411914    AEM75021.1    KY022438    ASL69968.1    NEVH01017557    PNF23879.1    GFDF01001362    JAV12722.1    MH592959    AXL66211.1    AJVK01006907    LJIG01022729    KRT79015.1    AJWK01006337    EU124605    ABV60323.1    MH592948    AXL66200.1    AAAB01008980    EAA13849.2    KM609486    KP676380    AJQ30110.1    ALO61090.1    HQ385974    KT724283    ADQ73875.1    AMK48125.1    ATLV01014758    KE524984    KFB39530.1    GANO01001269    JAB58602.1   
Proteomes
UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000276569    + More
UP000053105    UP000000311    UP000078492    UP000007755    UP000036403    UP000008237    UP000078541    UP000053097    UP000279307    UP000078542    UP000075809    UP000215335    UP000002358    UP000075883    UP000075886    UP000007819    UP000075884    UP000075920    UP000235965    UP000076408    UP000075885    UP000075900    UP000092462    UP000092461    UP000075881    UP000075882    UP000007062    UP000030765    UP000076407    UP000075903    UP000075902   
PRIDE
Q1EPM0    Q3HR37    Q5XXS6    Q6PPI3   
Pfam
PF02800   Gp_dh_C        + More
PF00044   Gp_dh_N
Interpro
IPR020830   GlycerAld_3-P_DH_AS        + More
IPR006424   Glyceraldehyde-3-P_DH_1       
IPR036291   NAD(P)-bd_dom_sf       
IPR020828   GlycerAld_3-P_DH_NAD(P)-bd       
IPR020831   GlycerAld/Erythrose_P_DH       
IPR020829   GlycerAld_3-P_DH_cat       
SUPFAM
SSF51735   SSF51735       
ProteinModelPortal
Q1EPM0   Q3HR37   A0A385AAY7   I4DM65   A0A0N1IPH1   A0A385AAZ4   + More
I4DIT9   A0A385AB04   A0A1W5LB28   A0A221SMS5   A0A385AAY1   A0A385AAZ6   A0A385AAZ1   A0A212EJK4   A0A385AAZ8   A0A2A4JJ10   A0A0K0KFC7   A0A3B0E5Z2   A0A2W1BMY7   A0A385AB02   A0A0B5L5W1   S4NXR5   A0A0K2CTV2   A0A385AAY9   E7D2J4   M4Q0P2   A0A2Z5SVU8   A0A2H4WW83   F5BYH8   A0A125RM77   A0A385AAZ0   Q8MPI0   A0A0A7BYG7   A0A1W5TA01   A0A291FJ95   A0A385AB01   D7RFH6   A0A1B1LYT6   A0A0N0U4U4   E9INY0   E2ABQ6   A0A195E403   Q2VEV8   Q2VEU6   G3FP80   F4WH18   A0A0J7L8Z8   E2BXU6   Q2VEV6   R4J9E2   M9V879   A0A195EW11   Q5XXS6   A0A026WZ24   A0A1D1YHK1   A0A1B6DD01   R4J9F1   A0A286NL55   A0A195CAP2   A0A1B6DRP0   A0A0A7DNR4   A0A151XI19   Q6PPI3   A0A2R3WIG9   A0A1B6MJA5   A0A2L1GU70   A0A232FB79   K7IWP0   A0A2P0XIG5   A0A1B6LSM4   A0A1B6LLG5   A0A182MLS4   A0A182Q0I6   Q4PP91   A0A059XPP2   A0A2H8TRR6   J9K9Z1   G3LSZ8   A0A182NB09   A0A182VTT5   A0A2J7Q5L9   A0A1L8E2B2   A0A182Y8D6   A0A182P826   A0A182RCD4   A0A385AB10   A0A1B0DM89   A0A0T6AWP1   A8CWA4   A0A182K9L4   A0A385AAZ3   A0A182L624   Q7Q1U8   A0A0C5QRW7   G8CV15   A0A084VNI6   U5EWU0   A0A182XCF6   A0A182VLS6   A0A182TTA1  
PDB
4WNC     E-value=1.20982e-139,     Score=1271

Ontologies

KEGG
692786    K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] | (RefSeq) GAPDH; glyceraldehyde-3-pho
GO
GO:0004365   GO:0006096   GO:0006006   GO:0051287   GO:0050661   GO:0016620   GO:0005829   GO:0006000   GO:0004553   GO:0005634   GO:0006334   GO:0003779   GO:0016021   GO:0055114  
PANTHER
PTHR10836  

Topology

Length:
332
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0454900000000001
Exp number, first 60 AAs:
0.03973
Total prob of N-in:
0.00919
outside
1  -  332
 
 

Population Genetic Test Statistics

Pi
121.826189
Theta
213.514595
Tajima's D
-1.260812
CLR
0.359942
CSRT
0.095845207739613
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
25044914 KVIHIDR 96.43 3e-12
25044914 VIIQRPIPK 96.30 2e-11
28556443 IGINGFGR 100.00 3e-10
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 5e-06
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 5e-06
26822097 IAVFSER 100.00 3e-05
26280517 IISSVGIEADAEK 100.00 3e-05
25044914 AGADIVYVITTEDAAPVIK 100.00 3e-05
27102218 IISWYDNEYGYSSR 100.00 3e-05
28467696 AFYSDQIGKYEK 100.00 3e-05
28556443 AGAEYVVESTGVFTTTDK 100.00 3e-05
28556443 AGAEYVVESTGVFTTTDK 100.00 3e-05
28556443 AGAEYVVESTGVFTTTDK 100.00 3e-05
28556443 AGAEYVVESTGVFTTTDK 100.00 3e-05
28556443 AGAEYVVESTGVFTTTDK 100.00 3e-05
28556443 AGAEYVVESTGVFTTTDK 100.00 3e-05
28556443 AGAEYVVESTGVFTTTDK 100.00 3e-05
28556443 AVGKVIPALNGK 100.00 3e-05
28556443 TRPPVAAGATGLAQR 100.00 3e-05
28556443 LISWYDNEYGYSSR 100.00 9e-05
28556443 LISWYDNEYGYSSR 100.00 9e-05
28556443 LISWYDNEYGYSSR 100.00 9e-05
28556443 LGKPASYEAIK 100.00 9e-05
28556443 GSVEVQDGFLVVNGNK 100.00 9e-05
28556443 GAQQNIIPASTGAAK 100.00 1e-04
28556443 GSVEVQDGFLVVNGNK 100.00 4e-04
28556443 GSVEVQDGFLVVNGNK 100.00 4e-04
28556443 GSVEVQDGFLVVNGNK 100.00 4e-04
28556443 GSVEVQDGFLVVNGNK 100.00 4e-04
28556443 GSVEVQDGFLVVNGNK 100.00 4e-04
28556443 GSVEVQDGFLVVNGNK 100.00 4e-04
28556443 GAQQNIIPASTGAAK 100.00 4e-04
28556443 GAQVVAINDPFIGLDY 100.00 4e-04
28556443 CLAPLAK 100.00 7e-04
26822097 IGKPASYEAIK 100.00 0.003
26280517 ADDGTPIVSIIEK 100.00 0.003
25044914 GAQIYYVDSEGTR 100.00 0.003
24402669 GAPNMINTFWEQSTVDIAR 100.00 0.003
27102218 IGKPASYEAIK 100.00 0.003
28467696 GAQIYYVDSEGTR 100.00 0.003
28556443 GAQQNIIPASTGAAK 100.00 0.003
28556443 AGAEYVVESTGVFTTTDK 100.00 0.003
28556443 AGAEYVVESTGVFTTTDK 100.00 0.003
28556443 VPVANVSVVDLTVR 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIHDNFEIVEGLMTTVHATTATQK 100.00 0.004
28556443 VIDLIK 100.00 0.004
28556443 LISWYDNEYGYSSR 100.00 0.004
28556443 LEAYDPSFK 100.00 0.007
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