SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01174  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007451
Annotation
PREDICTED:_1?4-alpha-glucan-branching_enzyme_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.156
 

Sequence

CDS
ATGTCTAAGATACCAATTTTAATAAATAATTTCTGTAAAAGAAACATTTCTGTAACAGCGACTAGAGAAGCTATGGATCCGATGGAAGTGCCTGTACCAGATTTAGAGAAATTATTCGAAAGAGACGGTTATTTGAAGCCATACGAAAGAGAAATTAGAAGGAGATATGCTTGCTACAAAGATATTTGGGACCGTATCGAATCATGGGACGGTGGCCTAGAAGCATTCACGAAGGGCTACAAATACTACGGACCCCAATTTAATCAGGATGGCTCCGTTACGTGGCGCGAGTGGGCTCCAGGAGCGCATAGCCTACATCTTCGAGGAGAATTCAATGGATGGGACTCGAAGAGCCATCCATTCGCTAAAAAGGAGTACGGCAAATGGGAGATTCAAATCCCTGCAAATCCAGACGGTTCGTGTGCATTGAAACACGACTCCCGTGTCCAAATCATAGTGAACGACAACTTGTACAGAATATCACCGTGGGCCAGTTACGTGAAGCCACATGAGGGTTTTACTTATCAACATTTTATTTATAAGCCAGAACAGCCCTACAAATTCAAGCATCCAAAGGTAGACAAGCCAAGGTCTCTTCGCATCTACGAGTGTCACGTTGGTATAGCAACGTCCGAGGGTAAAGTGGGCTCTTACAACGAGTTCCGCGAGAACGTCCTGCCCAGAATCAAGAAACAGGGTTACAATGCTATACAGATCATGGCCATAAAGGAACATGCATATTACGCTTCGTTTGGGTATCAAGTTACCAGCTTTTTTGCTGCCAGCAGTCGTTACGGGACTCCTTGCGAACTAAAACAGCTGATAGATCGGGCACACGAGATAGGTCTATACGTTCTACTGGACGTGGTACATTCGCACGCTTCGAAGAACACTCTAGATGGACTCAATGAGTTTGACGGCACAAACGCTTGCTACTTCCACGACGGACCTAGGGGCACACACTCTTTGTGGGACAGCAGACTGTTCAATTATTCCGAGATCGAGGTTTTGCGTTTCCTACTATCAAACCTGCGATGGTATCAAGAAGAATATCAATTCGATGGCTTCAGGTTCGACGGCGTGACGTCAATGTTGTACCACAGTCGCGGTATCGGTGAGGGGTTCTCTGGTCACTACGACGAATATTACGGACTGAATGTAGACACCGAGGCACTGATCTACCTGATGCTCGCCAACGACATTGTGCACAGCATCGATAACAGAGTCATCACTATTGCTGAGGACGTATCTGGTATGCCAGCGTCTTGCCGGCCGGTTCGCGAGGGCGGCACCGGCTTCGACTACCGCCTCGGCATGGCCATCCCGGACATGTGGATCAAGCTGCTCAAGGAAGAGAAGGATGAAGACTGGAAGATGGGTCACATCGTGCACACCCTCACTAACCGACGTTGGATGGAAGGAACTATCGCCTACGCCGAAAGTCATGATCAAGCGTTAGTTGGTGATAAAACAATAGCGTTTTGGTTGATGGACGCCGCGATGTACACGCACATGAGCACCCTCAGCGAGCCCAGCGCCGTGGTGGAGCGCGGCCTCGCCCTACACTGCATGATACGACTCATCACGCATGCGCTCGGCGGAGAGGGATATCTTAACTTTATCGGCAATGAGTTCGGTCATCCCGAATGGCTAGACTTCCCGCGAGCCGGTAACAACTCGTCTTACCACTACGCCAGACGTCAATGGCACCTCGTGGATGACGAACTCCTCAAGTACAAGTTCCTCAATGAATTCGACAGGGATATGAATCATTTGGAGGAAAAGTACGGCTGGTTGAGATCTGATCCTGGCTTTGTGTCATGTAAGCACGAAGCGGACAAAGTGATAGCTTTCGAACGTGCGGGCCTTGTTTTTGTCTTCAACTTTCACCCGTACCAGAGCTTTACAGATTACAGGATTGGTGTCAACGTGTCCGGCAAATATAAGGCTATACTATGTTCAGATAGTAAGAAATATGGAGGTTTTGGTCGAGTAGAGCCTGACGGAGAGTTCCATTCCACACAGCAAATACCATGGGGAAATAGAAATGATTCAATACAGGTTTACATCCCTTGCCGTACTGCTATTGTATACGCACCAACCTAA
Protein
MSKIPILINNFCKRNISVTATREAMDPMEVPVPDLEKLFERDGYLKPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGPQFNQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQIIVNDNLYRISPWASYVKPHEGFTYQHFIYKPEQPYKFKHPKVDKPRSLRIYECHVGIATSEGKVGSYNEFRENVLPRIKKQGYNAIQIMAIKEHAYYASFGYQVTSFFAASSRYGTPCELKQLIDRAHEIGLYVLLDVVHSHASKNTLDGLNEFDGTNACYFHDGPRGTHSLWDSRLFNYSEIEVLRFLLSNLRWYQEEYQFDGFRFDGVTSMLYHSRGIGEGFSGHYDEYYGLNVDTEALIYLMLANDIVHSIDNRVITIAEDVSGMPASCRPVREGGTGFDYRLGMAIPDMWIKLLKEEKDEDWKMGHIVHTLTNRRWMEGTIAYAESHDQALVGDKTIAFWLMDAAMYTHMSTLSEPSAVVERGLALHCMIRLITHALGGEGYLNFIGNEFGHPEWLDFPRAGNNSSYHYARRQWHLVDDELLKYKFLNEFDRDMNHLEEKYGWLRSDPGFVSCKHEADKVIAFERAGLVFVFNFHPYQSFTDYRIGVNVSGKYKAILCSDSKKYGGFGRVEPDGEFHSTQQIPWGNRNDSIQVYIPCRTAIVYAPT

Summary

EMBL
BABH01036294    BABH01036295    KQ460366    KPJ15608.1    KZ149958    PZC76439.1    + More
KQ459249    KPJ02369.1    AGBW02014444    OWR41663.1    ODYU01010374    SOQ55445.1    GAIX01003822    JAA88738.1    NEVH01009087    PNF33674.1    KK852819    KDR15603.1    GECZ01001884    JAS67885.1    GDIQ01014653    JAN80084.1    GEDC01024314    GEDC01015719    JAS12984.1    JAS21579.1    GDIP01151331    LRGB01001479    JAJ72071.1    KZS11883.1    GDIP01252325    JAI71076.1    GEDC01024252    GEDC01014778    JAS13046.1    JAS22520.1    GALX01004256    JAB64210.1    GAKP01012849    GAKP01012847    JAC46105.1    DS235005    EEB10319.1    GFXV01004652    MBW16457.1    GEDC01024245    JAS13053.1    GEZM01030904    GEZM01030903    GEZM01030902    GEZM01030901    GEZM01030893    GEZM01030890    GEZM01030885    GEZM01030881    GEZM01030880    GEZM01030878    GEZM01030877    GEZM01030876    JAV85191.1    CH933808    EDW10725.1    GDHF01015726    GDHF01007159    JAI36588.1    JAI45155.1    GEDC01006005    JAS31293.1    GDIP01015267    JAM88448.1    CH940648    EDW60431.1    GAMC01009000    JAB97555.1    GL732712    EFX66191.1    CH963849    EDW74423.1    GDIQ01167300    JAK84425.1    CH902619    EDV36460.1    GDIP01089392    JAM14323.1    CH916444    EDV95483.1    GDIP01143736    GDIQ01254494    LRGB01002190    JAJ79666.1    JAJ97230.1    KZS08657.1    KQ971307    EFA11030.1    KZ288468    PBC25379.1    JR037130    AEY57597.1    GBXI01006140    JAD08152.1    GDIQ01271078    JAJ80646.1    JXUM01099388    GAPW01000402    KQ564488    JAC13196.1    KXJ72204.1    BT150344    AGW30431.1    CH477675    EAT37380.1    CM000362    CM002911    EDX06880.1    KMY93410.1    NNAY01004198    OXU18210.1    CP012524    ALC40882.1    GDIP01244305    JAI79096.1    AE013599    AAF58416.2    KK107139    EZA57714.1    CM000071    EAL25760.2    CH477788    EAT36211.1    OUUW01000001    SPP73409.1    GL888243    EGI64074.1    CH954179    EDV56210.1    AXCM01000168    CCAG010016893    CM000158    EDW90664.1    ATLV01016449    ATLV01016450    KE525091    KFB41349.1    GBXI01001649    JAD12643.1    AXCN02001757    GGFK01004048    MBW37369.1    GDRN01093243    JAI59926.1    GBHO01003996    GBHO01003993    JAG39608.1    JAG39611.1    KQ414716    KOC62880.1    GGFJ01002848    MBW51989.1    GL768124    EFZ12033.1    GBHO01003997    GBHO01003995    JAG39607.1    JAG39609.1    AAAB01008849    EAA07235.3    APCN01005154    GDRN01093244    JAI59925.1    AK417772    BAN20987.1    GBRD01008036    JAG57785.1    GBRD01008037    JAG57784.1    GGFJ01002849    MBW51990.1    GGFM01006797    MBW27548.1    LBMM01003971    KMQ92942.1    GFDL01006346    JAV28699.1    GL438820    EFN68446.1    ADMH02000320    ETN66982.1    GFDF01001356    JAV12728.1    GEZM01030898    JAV85203.1   
Pfam
PF00128   Alpha-amylase        + More
PF02922   CBM_48
PF02806   Alpha-amylase_C
Interpro
IPR013780   Glyco_hydro_b        + More
IPR013783   Ig-like_fold       
IPR037439   Branching_enzy       
IPR017853   Glycoside_hydrolase_SF       
IPR014756   Ig_E-set       
IPR004193   Glyco_hydro_13_N       
IPR006047   Glyco_hydro_13_cat_dom       
IPR006048   A-amylase/branching_C       
SUPFAM
SSF51445   SSF51445        + More
SSF81296   SSF81296       
Gene 3D
PDB
4BZY     E-value=0,     Score=2204

Ontologies

Topology

Length:
701
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01295
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00062
outside
1  -  701
 
 

Population Genetic Test Statistics

Pi
226.045686
Theta
191.460929
Tajima's D
0.335084
CLR
11.997359
CSRT
0.468426578671066
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 FDGVTSMIYHSR 100.00 2e-07
26280517 VITGDIDSSIASIANNISINK 100.00 2e-07
25044914 VITEINGKDVEQIIAAGR 100.00 2e-07
26822097 WEIQIPANPDGSCAIK 100.00 6e-07
26280517 VDPAVAAYVDIHNTIVNSIFMK 100.00 6e-07
28467696 VEPCDVGTYR 100.00 6e-07
26822097 VITIAEDVSGMPASCRPVR 100.00 1e-04
26280517 YWICAAFGPSIK 100.00 1e-04
25044914 YYGPIEASIVK 100.00 1e-04
28467696 YYGKPDTPFSQIK 100.00 1e-04
26822097 FIISNIR 100.00 0.001
26280517 IYDEIIR 100.00 0.001
27102218 HEADKVIAFER 100.00 0.001
28467696 IYDWQSAQR 100.00 0.001
26280517 WYAAPWSECTK 100.00 0.037
27102218 IFNYSEIEVIR 100.00 0.037
28467696 WYQAAAFQPFFR 100.00 0.037
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