SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01169
Annotation
PREDICTED:_uncharacterized_protein_LOC106719734_[Papilio_machaon]
Location in the cell
Cytoplasmic   Reliability : 1.767 Nuclear   Reliability : 2.151
 

Sequence

CDS
ATGGATGTGCGGTCGAGCAGGAGTACTTTGAGTGAGCAGGAGTTGATTGGTGATGAGGTAGAACAATTTCAAGAAGAGAATTCTATGCAAGAGATGAATGCGATGGAGGATTGGTTAAGACCAGAGAAGAGAAAAGATGTCAACAGTGACGATGAATGGACAACGATTAAATCGAAGCAGAAGAAGCTTAAACCGGAAGTTGAGAAAATAGAGATGTACTTAACTGGTAGTGAGCCGCTGCCGAAACAATTTTCTTTAGCGAAAATATTTTGTGAGATGGATATTACCGATGTGGACCGCGTAAAATATGTTAACCCATACAAAGTGCGTATCGATGTACAGAACCCACTGAGCGCAGAGAGGATTGAAAAAAGTTCTAAGATAGCAGATAAAGGCTGGCGTGTACAAAGAGCTATGGAGAAGAATTTATCATATGGTGTTATTCGCGACATAGACTTGGAAATATCCGACAAAGAGATTTTTGACACAATATCGTGCCCCAAACCAGCAGAACTGGTATCTATATTCCGTCTCAACCGGCGCAGTAGCTCGGGCGACGGATGGGTACCTAGTGAGTCGGTGCGGTTATGTTTTAAGGGTGCGTTCATACCTGCGGAGCCTGATGTATCTGTATTGGACTCTGCTGCTGAAGCTGAAATAGAAGAGATGCCCGGGAAAAATGTGCCTCTGGAACAGAAGGAAAGAAGAAATGTGAATTTTGTAGAGTTATTGAATAAATTGAAAGATCTTTTTTTTTTAAAAACAGTGTCGCTAGAATCTAAAGTGAAAAGTGTACTTAAGTGTTGCATCGAATGGTTGATCTTGGTTGCGGTAGACAATATTTCCGACTGGCCAGTATTGAAAAACATATTAGATCTGTTTATGGACTATGGATAA
Protein
MDVRSSRSTLSEQELIGDEVEQFQEENSMQEMNAMEDWLRPEKRKDVNSDDEWTTIKSKQKKLKPEVEKIEMYLTGSEPLPKQFSLAKIFCEMDITDVDRVKYVNPYKVRIDVQNPLSAERIEKSSKIADKGWRVQRAMEKNLSYGVIRDIDLEISDKEIFDTISCPKPAELVSIFRLNRRSSSGDGWVPSESVRLCFKGAFIPAEPDVSVLDSAAEAEIEEMPGKNVPLEQKERRNVNFVELLNKLKDLFFLKTVSLESKVKSVLKCCIEWLILVAVDNISDWPVLKNILDLFMDYG

Summary

Pfam
PF00075   RNase_H        + More
PF00078   RVT_1
Interpro
IPR036397   RNaseH_sf        + More
IPR000477   RT_dom       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
SUPFAM
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
298
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0253
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05288
outside
1  -  298
 
 

Population Genetic Test Statistics

Pi
316.486713
Theta
177.779668
Tajima's D
3.060389
CLR
1.610049
CSRT
0.981950902454877
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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