Silkworm Genome Informatics Database

Gene

KWMTBOMO01165 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007486

Annotation

PREDICTED:_vacuolar_protein_sorting-associated_protein_11_homolog_[Bombyx_mori]

Location

Bomo_Chr3(+):3707726-3712270 View in EpiBrowser

Full name

Vacuolar protein sorting-associated protein 11 homolog

Location in the cell

Nuclear Reliability : 2.505

CDS

ATGCTACATCCATTCTCTTGGTGCTTCGCCGGTACAGTCGACAAGAACTACGAAAGTTACTCCGTAGTATCAGAGTACTACGGACGCGGTCTGTTCAACAAGCTGACCGTCGTTACGGAGAGCGAGGAAGCCGCCCCCGCGCCCGCCTCCGCGCCCGTCCCCGCACCCGTCCCCGCACCCGCGCCCGCCCCCGCCCCCGCCTATGGTGCCGGAGCTGAAGCTAAACTCAGGATGCAGGAAGGACAAAGCAAGCAGTTGTTCGTACCGAACGCTCCGAAACAGATAGCCCCTAAAGGCAGCAGCGTGGTGCCGGTCCCCGAGGGCAGGATGCGCCTCATGGAGCAGCAGCAGTACAGCAGCAGCCTCGAGGCGAACCTCACCAGGCTCGAGCCCGTGCACACCAAGAAACCGTCGCCCTTCGCCTCGCCGAGGGCCGCGAAGCGAATAGTCCTCGACCAACCTAAAACCTCGAAACCTCCAGTAACGAAGCTCGAGGGGAGCAACCCCTTCGACGAGCACTACGACGAGTCCAAGAACCCGTTCGCGGACGAACAAGGAGACGACCCGACCAACCCCTTCGCGGGAGACGACGACTACGACTCCAACTATAATCCCTTCGCTAAAGACGACTAG

Protein

MLHPFSWCFAGTVDKNYESYSVVSEYYGRGLFNKLTVVTESEEAAPAPASAPVPAPVPAPAPAPAPAYGAGAEAKLRMQEGQSKQLFVPNAPKQIAPKGSSVVPVPEGRMRLMEQQQYSSSLEANLTRLEPVHTKKPSPFASPRAAKRIVLDQPKTSKPPVTKLEGSNPFDEHYDESKNPFADEQGDDPTNPFAGDDDYDSNYNPFAKDD

Similarity

Belongs to the VPS11 family.

Uniprot

H9JD89 A0A1E1VZ07 A0A1E1W652 A0A2H1X1M0 A0A2W1BS46 A0A194QA10 + More
A0A0N1IPH0 A0A2J7PDC8 A0A2J7PDC9 A0A2J7PDD6 A0A1W4XGV5 A0A1L8DVY0 E2B3X3 A0A182K702 A0A151X865 A0A0C9RN20 A0A182NR94 A0A158NLL7 A0A0M9A8X3 A0A0L7R8R8 A0A0J7NUV3

Pubmed

19121390 28756777 26354079 20798317 21347285

EMBL

BABH01036280 GDQN01011132 JAT79922.1 GDQN01008598 JAT82456.1 ODYU01012745 + More
SOQ59209.1 KZ149958 PZC76445.1 KQ459249 KPJ02358.1 KQ460366 KPJ15599.1 NEVH01026389 PNF14340.1 PNF14339.1 PNF14338.1 GFDF01003494 JAV10590.1 GL445407 EFN89642.1 KQ982431 KYQ56510.1 GBYB01009735 JAG79502.1 ADTU01002180 ADTU01002181 KQ435711 KOX79645.1 KQ414631 KOC67277.1 LBMM01001510 KMQ96170.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000235965 UP000192223 UP000008237 + More
UP000075881 UP000075809 UP000075884 UP000005205 UP000053105 UP000053825 UP000036403

PRIDE

H9JD89

Pfam

PF13733   Glyco_transf_7N        + More
PF02709   Glyco_transf_7C
PF12451   VPS11_C
PF00637   Clathrin

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR001841   Znf_RING
IPR011990   TPR-like_helical_dom_sf
IPR016528   VPS11
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR000547   Clathrin_H-chain/VPS_repeat
IPR013083   Znf_RING/FYVE/PHD
IPR027791   Galactosyl_T_C
IPR003859   Galactosyl_T
IPR027995   Galactosyl_T_N
IPR029044   Nucleotide-diphossugar_trans
IPR024763   VPS11_C
IPR016024   ARM-type_fold
IPR001680   WD40_repeat

SUPFAM

SSF50978   SSF50978        + More
SSF53448   SSF53448
SSF48371   SSF48371

Gene 3D

1.25.40.10 2.130.10.10 3.30.40.10 3.90.550.10

ProteinModelPortal

H9JD89 A0A1E1VZ07 A0A1E1W652 A0A2H1X1M0 A0A2W1BS46 A0A194QA10 + More
A0A0N1IPH0 A0A2J7PDC8 A0A2J7PDC9 A0A2J7PDD6 A0A1W4XGV5 A0A1L8DVY0 E2B3X3 A0A182K702 A0A151X865 A0A0C9RN20 A0A182NR94 A0A158NLL7 A0A0M9A8X3 A0A0L7R8R8 A0A0J7NUV3

KEGG

101739023 K20179 vacuolar protein sorting-associated protein 11 | (RefSeq) vacuolar protein sorting-associated

GO

GO:0006886 GO:0016192 GO:0005623 GO:0016757 GO:0005975 GO:0030674 GO:0016020 GO:0007032 GO:0006904

PANTHER

PTHR23323:SF24

Length:

210

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00022

Exp number, first 60 AAs:

0.0001

Total prob of N-in:

0.01437

outside

1 - 210

Pi

166.037725

Theta

125.108512

Tajima's D

0.568256

CLR

2.621354

CSRT

0.533423328833558

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics