Gene

KWMTBOMO01160

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]

Location

Bomo_Chr3(-):3581945-3583685      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.638

CDS

ATGATCCTCCTGCTTGTGGATGAGCTTATCCCTATCATTACATATATTCTTAACTTCTCTCTCCTAAAAGGCTCATTCCCAAGTAGCTGGAGAAAGGCTCATGTTCTCCCACTTCCTAAGGTCCCTAATCCTTCCTCTTTTTCTCAGTTTCGTCCAATCTCAATACTTCCCATTCTCTCTAAAGTCTTGGAGGGTTTAGTCCAAAGACAGCTCACTGTCTTTCTTAATAAAAACAATCTCCTCAACTCTTTTCAGTCTGGTTTCCGCCAAGGCCACAGCACGGTCACTGCATTGCTCAAGGTCACCGACGACATTCGCCACGCGATTGATGTGGGGCAGCTAACCGTGTTGACCTTATTGGACTTCAGCAGTGCATTTAACTCAGTAGACTTTGACATCCTTCTAAGTATCCTTGGATCTCTTAATGTATCTCCACTTGCTCTAACCTGGTTTGAATCTTATCTTCGGGGACGCTCGCAATGTGTCCGCTCTGATGATGCTACATCGAAATGGTGTGATTTAACTGTGGGTGTACCTCAAGGTGGCGTACTATCTCCTCTGCTTTTCTCTATTTTTATTAACGAAATCACCCAGGTGCTGACTTCTCACTACCATCTCTACGCTGACGATTTGCAGATTTATAGACATTTTAAAGCTGATGATGTTGCTCTAGCTATTGCTGAAATCAATGGAGATCTTGATAGAATTAGTGCTTGGGCTAAATCTTTTGGACTTCTTGTGAATCCATCAAAATCACAGGTCATAGTAATTGGTAGTTCCTATAGGTACAACACGATTGACCACATTAATTTGCCCCCTGTGACGCTAGATGGAATTCCAATCGCTTATTCTAAAACAGCAAAAAACCTAGGTATCGTTCTTGATTGTCATCTCTCTTGGTCCAGTCAGATAAATTTAGTTAGCAGGAAAGTGCATTGCACGTTTCAGTCTCTCAAGCGTCTTCAGCGTTTCTTGCCCTTTGAAGCTAAAGTCACCCTGGCCCAATCCCTTATGCTTCCTCTCCTTGACTATGCGGATGTCTGTTTCCTCGACGCCGCGGAGGGGCTATGGAACAAACTGGAAAGGTTACAAAATTTATGCATACGCTTTATTTTTGGTTTACGCAAGTATGATCATGTCTCGCAGTACAGATCACAACTTAATTGGTTGCCTATCCGACTTCGCCGTGATGCACATGTTTTATGTATGCTGTTCAACATCCTCAATAACCCAGCTGTTCCCCAGTACCTCCGTGAGCGCTTCGAGTACCAGATGCCCCGTGGTGTACCCTGTCGTACAAGTAGATCCCTTCTCCTTAATTTTCCCCCTCACTCCTCCAGCCGCTACGGTGGTTCGTTCACTGTGCACTCTGTGCGTCTGTGGAACTCAGTTCCACACTCAATCCGTGCAAGTCCCTCACTTGAAGTTTTCAGGAAGGCATTAAAGGAGCACTATCTATCAATTTAG

Protein

MILLLVDELIPIITYILNFSLLKGSFPSSWRKAHVLPLPKVPNPSSFSQFRPISILPILSKVLEGLVQRQLTVFLNKNNLLNSFQSGFRQGHSTVTALLKVTDDIRHAIDVGQLTVLTLLDFSSAFNSVDFDILLSILGSLNVSPLALTWFESYLRGRSQCVRSDDATSKWCDLTVGVPQGGVLSPLLFSIFINEITQVLTSHYHLYADDLQIYRHFKADDVALAIAEINGDLDRISAWAKSFGLLVNPSKSQVIVIGSSYRYNTIDHINLPPVTLDGIPIAYSKTAKNLGIVLDCHLSWSSQINLVSRKVHCTFQSLKRLQRFLPFEAKVTLAQSLMLPLLDYADVCFLDAAEGLWNKLERLQNLCIRFIFGLRKYDHVSQYRSQLNWLPIRLRRDAHVLCMLFNILNNPAVPQYLRERFEYQMPRGVPCRTSRSLLLNFPPHSSSRYGGSFTVHSVRLWNSVPHSIRASPSLEVFRKALKEHYLSI

Uniprot

A0A2A4JRM8   A0A2A4JWP8   A0A1B6L226   A0A1B6L6Y3   A0A1B6KKS7   A0A1B6LTE5   + More
A0A1B6K9B1   A0A2H1WCC1   A0A1B6HKJ1   U5EQQ2   A0A023EXE1   U5EUG4   U5EQA6   A0A194QKM3   A0A0J7N335   A0A0A9VTC1   A0A354GGU9   A0A1B6K7R5   A0A354GGZ3   K7JAP0   A0A0J7K589   A0A0J7KR96   A0A0J7KSZ7   A0A354GIY0   A0A3L8DMY5   A0A3C1S155   A0A354GES4   A0A3C1RY27   A0A3C1S1N3   A0A3C1S319   A0A146MD70   A0A0A9WX05   A0A0A9YXJ4   A0A354GG23   A0A3C1S3J7   A0A3C1RZS6   A0A1Y1MCW4   A0A0A9YIX2   A0A354GI57   U5ETW8   A0A354GHC6   A0A1Y1MMA0   A0A3C1S2P1   A0A2A4IWQ4   A0A2A4KAV4   U5EQT8   A0A3P8SQQ3   A0A1Y1M988   A0A1Y1NB24   A0A2W1BK42   U5EQV9   A0A0A9WM49   U5ETR7   A0A194QGG5   U5EQJ2   M3XKU2   A0A3P9MM16   A0A1L8DJB0   A0A0J7KF45   A0A3B1J4H0   U5EQE2   U5ENG8   K7JTU8   A0A1Y1M3U5   A0A3B1ID12   A0A0A9Y046   A0A1B6KNH6   A0A2B4RHP5   A0A2G8LDL3   A0A3P9H3I2   A0A3B1IFS8   A0A1Y1MBG6   A0A3P9M6K8   U5EEC7   A0A3P9IQD1   A0A3P8NL25   W8AIM4   R4GCU3   A0A3B3C4H2   R4GD80   W8B6W6   A0A1Y1LVZ3   A0A3B3BIG0   U5ER05   A0A1A8PRG6   A0A3B1ITJ3   U5EQB9   A0A3P8P827   A0A3P8P7I2   A0A1A8R6J3   U5EN99   K7JMB3   A0A3B3B5V6   A0A3B3BWV2   R4G973   A0A3B3DGF3   A0A3P8PXB5   A0A3B1IVJ9  

Pubmed

25474469    26354079    25401762    30148503    20075255    30249741    + More
26823975    28004739    28756777    9215903    17554307    25329095    29023486    24495485    21881562    29451363   

EMBL

NWSH01000817    PCG74070.1    NWSH01000468    PCG76206.1    GEBQ01022205    JAT17772.1    + More
GEBQ01020572    JAT19405.1    GEBQ01027915    JAT12062.1    GEBQ01013060    GEBQ01010336    JAT26917.1    JAT29641.1    GEBQ01031972    JAT08005.1    ODYU01007705    SOQ50729.1    GECU01032510    JAS75196.1    GANO01004126    JAB55745.1    GBBI01004799    JAC13913.1    GANO01003893    JAB55978.1    GANO01004338    JAB55533.1    KQ461198    KPJ06072.1    LBMM01010997    KMQ87090.1    GBHO01045128    JAF98475.1    DNUT01000248    HBI40237.1    GECU01000221    JAT07486.1    DNUT01000258    HBI40281.1    AAZX01023386    LBMM01014048    KMQ85356.1    LBMM01004152    KMQ92759.1    LBMM01003452    KMQ93522.1    DNUT01000451    HBI40968.1    QOIP01000006    RLU21552.1    DMQF01000113    HAO14334.1    DNUT01000056    HBI39512.1    DMQF01000003    HAO13943.1    DMQF01000352    HAO15199.1    DMQF01000396    HAO15350.1    GDHC01000945    JAQ17684.1    GBHO01031326    GBHO01031325    JAG12278.1    JAG12279.1    GBHO01007781    JAG35823.1    DNUT01000170    HBI39961.1    DMQF01000436    HAO15547.1    DMQF01000157    HAO14486.1    GEZM01034710    JAV83652.1    GBHO01012041    GBHO01012038    JAG31563.1    JAG31566.1    DNUT01000374    HBI40695.1    GANO01004166    JAB55705.1    DNUT01000297    HBI40414.1    GEZM01027174    GEZM01027173    JAV86813.1    DMQF01000361    HAO15230.1    NWSH01006271    PCG63543.1    NWSH01000010    PCG80923.1    GANO01004070    JAB55801.1    GEZM01039829    JAV81150.1    GEZM01007604    JAV95063.1    KZ150070    PZC74075.1    GANO01004066    JAB55805.1    GBHO01034750    JAG08854.1    GANO01004238    JAB55633.1    KQ458880    KPJ04628.1    GANO01004258    JAB55613.1    AFYH01007667    GFDF01007660    JAV06424.1    LBMM01008498    KMQ88826.1    GANO01004325    JAB55546.1    GANO01004094    JAB55777.1    AAZX01002422    AAZX01014809    GEZM01041318    GEZM01041317    JAV80524.1    GBHO01019121    JAG24483.1    GEBQ01026990    JAT12987.1    LSMT01000554    PFX16333.1    MRZV01000114    PIK58376.1    GEZM01037808    JAV81920.1    GANO01004362    JAB55509.1    GAMC01021038    GAMC01021033    GAMC01021031    JAB85522.1    GAMC01021037    GAMC01021036    JAB85519.1    GEZM01045590    GEZM01045589    JAV77734.1    GANO01003995    JAB55876.1    HAEI01003198    SBR83602.1    GANO01004361    JAB55510.1    HAEG01016041    SBS01700.1    GANO01004198    JAB55673.1    AAZX01023421    AAZX01025062    AAWZ02022173   

Proteomes

UP000218220    UP000053240    UP000036403    UP000002358    UP000279307    UP000265080    + More
UP000053268    UP000008672    UP000265180    UP000018467    UP000225706    UP000230750    UP000265200    UP000265100    UP000001646    UP000261560   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR000477   RT_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR011011   Znf_FYVE_PHD       

SUPFAM

SSF56219   SSF56219        + More
SSF57903   SSF57903       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4JRM8   A0A2A4JWP8   A0A1B6L226   A0A1B6L6Y3   A0A1B6KKS7   A0A1B6LTE5   + More
A0A1B6K9B1   A0A2H1WCC1   A0A1B6HKJ1   U5EQQ2   A0A023EXE1   U5EUG4   U5EQA6   A0A194QKM3   A0A0J7N335   A0A0A9VTC1   A0A354GGU9   A0A1B6K7R5   A0A354GGZ3   K7JAP0   A0A0J7K589   A0A0J7KR96   A0A0J7KSZ7   A0A354GIY0   A0A3L8DMY5   A0A3C1S155   A0A354GES4   A0A3C1RY27   A0A3C1S1N3   A0A3C1S319   A0A146MD70   A0A0A9WX05   A0A0A9YXJ4   A0A354GG23   A0A3C1S3J7   A0A3C1RZS6   A0A1Y1MCW4   A0A0A9YIX2   A0A354GI57   U5ETW8   A0A354GHC6   A0A1Y1MMA0   A0A3C1S2P1   A0A2A4IWQ4   A0A2A4KAV4   U5EQT8   A0A3P8SQQ3   A0A1Y1M988   A0A1Y1NB24   A0A2W1BK42   U5EQV9   A0A0A9WM49   U5ETR7   A0A194QGG5   U5EQJ2   M3XKU2   A0A3P9MM16   A0A1L8DJB0   A0A0J7KF45   A0A3B1J4H0   U5EQE2   U5ENG8   K7JTU8   A0A1Y1M3U5   A0A3B1ID12   A0A0A9Y046   A0A1B6KNH6   A0A2B4RHP5   A0A2G8LDL3   A0A3P9H3I2   A0A3B1IFS8   A0A1Y1MBG6   A0A3P9M6K8   U5EEC7   A0A3P9IQD1   A0A3P8NL25   W8AIM4   R4GCU3   A0A3B3C4H2   R4GD80   W8B6W6   A0A1Y1LVZ3   A0A3B3BIG0   U5ER05   A0A1A8PRG6   A0A3B1ITJ3   U5EQB9   A0A3P8P827   A0A3P8P7I2   A0A1A8R6J3   U5EN99   K7JMB3   A0A3B3B5V6   A0A3B3BWV2   R4G973   A0A3B3DGF3   A0A3P8PXB5   A0A3B1IVJ9  

PDB

6AR3     E-value=1.02142e-05,     Score=118

KEGG

NA   

GO

GO:0016021   GO:0003964  

Length:

488

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.648799999999999

Exp number, first 60 AAs:

0.42179

Total prob of N-in:

0.01929

outside

1  -  488

 

 

Pi

205.346523

Theta

129.597137

Tajima's D

3.084825

CLR

0

CSRT

0.980850957452127

Interpretation

Uncertain