SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01152
Pre Gene Modal
BGIBMGA007479
Annotation
PREDICTED:_serine/arginine_repetitive_matrix_protein_1-like_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 4.508
 

Sequence

CDS
ATGTCGAATTCACCTGTTGTTCCGTTACCGTTGCCCAAAACTAAAACAAATGAGAGTACCTCAGCATTGAAAAGCTCCCCGTCACCGCCGGACGATCTGCCACCTCCACCAATAGAACTCGTCAATCTAGAAACAGTTACATCTCCACCTCTTCAACTAAAATCGAATGAAACTCAATCAAAAAGCGATCGGAACATGCATGCCAAAGCGCTAAAACGGGATGATTCTATCGTTCGTGAAATTCCTCCAAAAATCGAAAAATTGACACTTGTTGCACCCGAAATAGAACAGAATAAGACTGAAACTAGACCCGTAAATGAAAGCACAAATGAATCAAAGGAAGAGGAGTCTAATGGAGTTGGTGATAAGATTAAGAAATTTGAGAAAGCAGCAGAGGAAGCGACCGTGGGACGTCTGTCCCGACCGGGGTCCATGCGCCGGCCCCGCGTTTCTCGTCTATCCTCTGATGCAAAAGATGAGTCTCCATCTGTTAGCTCGCCTGCTCCTCAATCGGATCGAATCAACTCTGTCTCTTCGCGGTGGCAACCCACAAACGGAGACCGGCCTCGGCCCGAACCCCAGAAAATAATAAAGCCAGAATTCCGTCAGACCGCAGTGACCTCTGAAATCACCATTCGATCACCGAGTCTCGGTGCGAAAATTGCTGATCGTTTCCCATCCCGCGATACTGCTTTTCGCAACGTCGCAGGGCCTGACGGAAATCGTACTCGCGATCAATCTGATGATGATACGGAGGCTCGCTCCAAAACGTCGGTCCAGAGGCGAGATCCTCGCCATTCGGTAAGCAAGGGGTCCAGTTATTTCACGCGCGGATCAGAGGAGATCTGGCTCGTTAAAAAGAAGGATATCGAGGAAATCGAAGAACGAGTTTTCGATTCATTTCGGCGAGCAGGGGCGTGTGTGCGCAACGAGGGACCGGTGCAGGGTGCTGCAGCGCAGGGTTGTACCGGGCAGGGCGGCGCGGCTCAGGGCTGTGCGGTACAGGGCGGCACTATGCGGCCGCGACGTCACGCCTACGGCCGCAGCGAGTCCCTGGAGGCGCACTGGGCGGGCACACGTGCCCACACGCTCAAGCGCCAGGCGTCAGTGGCATGCACGTGCGGCCACGACCGTAAGCCGCGACCTCGTGCGACGCCCGACACGCCCGTGCGGACCCGCTCCCGCTCTCACGGCGACGAAAACAATCAGTCGCAGGTTCTTGACAAGTATGAAACACTTGTGTAG
Protein
MSNSPVVPLPLPKTKTNESTSALKSSPSPPDDLPPPPIELVNLETVTSPPLQLKSNETQSKSDRNMHAKALKRDDSIVREIPPKIEKLTLVAPEIEQNKTETRPVNESTNESKEEESNGVGDKIKKFEKAAEEATVGRLSRPGSMRRPRVSRLSSDAKDESPSVSSPAPQSDRINSVSSRWQPTNGDRPRPEPQKIIKPEFRQTAVTSEITIRSPSLGAKIADRFPSRDTAFRNVAGPDGNRTRDQSDDDTEARSKTSVQRRDPRHSVSKGSSYFTRGSEEIWLVKKKDIEEIEERVFDSFRRAGACVRNEGPVQGAAAQGCTGQGGAAQGCAVQGGTMRPRRHAYGRSESLEAHWAGTRAHTLKRQASVACTCGHDRKPRPRATPDTPVRTRSRSHGDENNQSQVLDKYETLV

Summary

Pfam
PF02205   WH2
Interpro
IPR028288   SCAR/WAVE_fam        + More
IPR003124   WH2_dom       

Ontologies

Topology

Length:
414
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00021
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00092
outside
1  -  414
 
 

Population Genetic Test Statistics

Pi
193.40906
Theta
185.142192
Tajima's D
0.140503
CLR
25.80827
CSRT
0.401829908504575
Interpretation
Uncertain
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