SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01148  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007477
Annotation
receptor_for_activated_protein_kinase_C_RACK_1_isoform_1_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.102
 

Sequence

CDS
ATGTCTGAAACATTAAAACTCCGAGGAACTCTTAGAGGCCACAATGGCTGGGTTACTCAAATTGCAACTAATCCGAAATACCCGGACATGATCTTATCTTCCTCTCGAGACAAAACTCTCATCGTGTGGAAGCTGACCAGAGACGAAAACAACTACGGTATACCTCAAAAGCGTTTATACGGTCATTCGCACTTCATTTCTGATGTTGTGCTGTCTAGTGACGGTAATTACGCCCTTTCCGGTTCTTGGGACAAGACTTTGCGTTTGTGGGATCTCGCTGCAGGCAAGACTACCAGACGATTCGAGGACCATACTAAGGATGTACTCTCGGTAGCCTTCTCAGTTGACAACCGTCAGATAGTGTCTGGTTCTCGCGACAAGACTATCAAACTCTGGAACACCCTTGCGGAGTGCAAGTATACCATCCAAGATGATGGACACAGCGATTGGGTGTCATGTGTCAGATTCTCACCCAATCATGCCAACCCCATTATTGTATCCTGTGGTTGGGACAGAACTGTCAAGGTCTGGCATCTCACTAACTGTAAGCTCAAGATTAACCATTTGGGTCACTCTGGCTATCTGAACACTGTTACTGTATCACCTGATGGCTCTTTGTGTGCATCTGGTGGTAAGGATATGAAGGCGATGTTGTGGGATCTGAACGATGGCAAACACCTCCACACCTTAGACCACAATGATATCATCACGGCCTTGTGCTTCTCACCCAACAGATACTGGCTATGTGCTGCTTTCGGACCTTCCATCAAGATCTGGGATCTGGAAAGCAAGGAGATGGTTGAAGAGCTCAGGCCTGAAATCATTAACCAAACGCAAACTTCCAAGACAGACCCTCCTCAGTGTCTCTCCCTAGCATGGTCTACTGATGGACAAACCTTATTTGCTGGTTACTCAGATAATACTATAAGAGTGTGGCAGGTTTCCATCTCAGCTCGATAA
Protein
MSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDHNDIITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAWSTDGQTLFAGYSDNTIRVWQVSISAR

Summary

EMBL
DQ311399    HQ638203    ABD36343.1    AEH16566.1    BABH01036249    FJ943495    + More
ACR19030.1    AB189027    BAD52259.1    NWSH01001901    PCG69733.1    ODYU01007030    SOQ49414.1    JF417987    KZ150100    AEB26318.1    PZC73518.1    MG846923    AXY94775.1    EU259815    ABX55886.1    DQ073455    AAZ29605.1    AK402355    BAM18977.1    KQ460366    KPJ15581.1    AK401095    KQ459249    BAM17717.1    KPJ02344.1    HM449904    ADO33039.1    JTDY01000193    KOB78365.1    DQ073456    AAZ29606.1    JF979035    AEI84399.1    AB089281    BAC56715.1    AF368031    AAK51552.1    GAIX01005893    JAA86667.1    NEVH01014361    PNF27748.1    KK852699    KDR18184.1    DQ885470    ABI63548.1    LBMM01001608    KMQ96024.1    KQ980824    KYN12568.1    APGK01056999    APGK01057000    KB741277    ENN71239.1    HM130685    AEA72283.1    BT127823    AEE62785.1    KQ971363    EFA09061.1    KQ434769    KZC03785.1    GBBI01000720    GEMB01001668    JAC17992.1    JAS01495.1    GL435030    EFN74185.1    KZ288311    PBC28507.1    JR040024    JR040025    AEY58953.1    AEY58954.1    KK107154    QOIP01000001    EZA56887.1    RLU27536.1    GFTR01004967    JAW11459.1    AAZX01011471    GBGD01002203    JAC86686.1    GBHO01045067    GBRD01006980    GDHC01003293    JAF98536.1    JAG58841.1    JAQ15336.1    GEZM01036964    JAV82308.1    GL445147    EFN90078.1    GDKW01000983    JAI55612.1    LJIG01022720    KRT79066.1    ACPB03007814    GAHY01000561    JAA76949.1    AGBW02009673    OWR50156.1    GECZ01015246    JAS54523.1    GL762910    EFZ20464.1    GL888066    EGI68372.1    KQ976511    KYM82521.1    KQ981280    KYN43455.1    KQ978317    KYM95229.1    KQ761976    OAD56421.1    KQ982911    KYQ49323.1    GEDC01010684    JAS26614.1    GECL01003775    JAP02349.1    GDJX01009214    JAT58722.1    AK417015    BAN20230.1    KQ414663    KOC65376.1    GFXV01006951    MBW18756.1    AY737531    AAU84924.1    ABLF02035580    AK340474    BAH71077.1    GANO01000944    JAB58927.1    AY588074    AAT01086.1    GECU01035312    JAS72394.1    GFDF01006537    JAV07547.1    DS235250    EEB13987.1    GDIQ01040668    JAN54069.1    EF070464    ABM55530.1    KU932393    APA34029.1    HQ385972    KT724285    QKKF02022802    ADQ73873.1    AMK48127.1    RZF38185.1    GDIQ01003331    JAN91406.1    GDAI01001448    JAI16155.1    GFDL01001133    JAV33912.1    DS232248    EDS38373.1    DQ440042    CH477971    ABF18075.1    EAT34720.1    GAPW01002770    GAPW01002769    JAC10828.1    CVRI01000038    CRK94178.1    KK855891    PTY24280.1    GAKP01010382    JAC48570.1    GBXI01009016    JAD05276.1    GAMC01016362    JAB90193.1    EZ114913    ACU30966.1    GFDG01001544    JAV17255.1    CH940649    EDW63808.1    AAAB01008980    EAA13872.2    APCN01005219    GFDG01001565    JAV17234.1    KA647419    AFP62048.1    AXCM01000013   
Pfam
PF00400   WD40
Interpro
IPR020472   G-protein_beta_WD-40_rep        + More
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
SUPFAM
SSF50978   SSF50978       
Gene 3D
PDB
4V6W     E-value=3.50788e-157,     Score=1422

Ontologies

Topology

Length:
319
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00191
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.02343
outside
1  -  319
 
 

Population Genetic Test Statistics

Pi
167.571826
Theta
159.714579
Tajima's D
-0.43206
CLR
0.2019
CSRT
0.257937103144843
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 INHLGHSGYLNTVTVSPDGSLCASGGK 100.00 1e-12
28556443 HLHTLDHNDIITALCFSPNR 100.00 1e-12
28556443 HLHTLDHNDIITALCFSPNR 100.00 1e-12
28556443 HLHTLDHNDIITALCFSPNR 100.00 3e-08
28556443 GHNGWVTQIATNPK 100.00 3e-08
28556443 HANPIIVSCGWDR 100.00 3e-08
26822097 IWNTIAECK 100.00 8e-07
26280517 FSGIQHTHVTHIR 100.00 8e-07
25044914 FSPGEVIK 100.00 8e-07
27102218 IWNTIAECK 100.00 8e-07
28467696 FSPGAYYIITAGYDGR 100.00 8e-07
28556443 FSPNHANPIIVSCGWDR 100.00 8e-07
28556443 DENNYGIPQK 100.00 8e-07
28556443 DENNYGIPQK 100.00 8e-07
28556443 VWQVSISAR 100.00 2e-06
26822097 EMVEEIRPEIINQTQTSK 100.00 2e-05
26280517 YIAEIETIDCGKPVK 100.00 2e-05
25044914 YTIPSFWQNHPYYPFDK 100.00 2e-05
24402669 YTIPSFWQNHPYYPFDKVDNPIADPFIK 100.00 2e-05
27102218 AMIWDINDGK 100.00 2e-05
28467696 YTIKPVAEEIKK 100.00 2e-05
28556443 YPDMILSSSR 100.00 2e-05
26822097 YPDMIISSSR 100.00 0.001
26280517 GGTIIQYEDKIR 100.00 0.001
25044914 GHIYQSIEWIDK 100.00 0.001
27102218 YPDMIISSSR 100.00 0.001
28467696 GHMNYIQQQTVTTER 100.00 0.001
28556443 GHNGWVTQIATNPK 100.00 0.001
28556443 GHNGWVTQIATNPK 100.00 0.001
28556443 GHNGWVTQIATNPK 100.00 0.001
28556443 GHNGWVTQIATNPK 100.00 0.001
28556443 FSPNHANPIIVSCGWDR 100.00 0.001
28556443 FSPNHANPIIVSCGWDR 100.00 0.001
28556443 GHNGWVTQIATNPK 100.00 0.002
28556443 INHLGHSGYLNTVTVSPDGSLCASGGK 100.00 0.004
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