Gene

KWMTBOMO01142  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007475

Annotation

PREDICTED:_5-methylcytosine_rRNA_methyltransferase_NSUN4_[Amyelois_transitella]

Location

Bomo_Chr3(+):3257832-3265540      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.2

CDS

ATGCTTCAAATAACAAATTTGATCAAGAAAGGGCCTACAACTTGTGCTCACTTATTAAGACAATCTCGACATAAATCTAAAACTCATTGGGCAAAGTTAAGAAAAAAGACCGGCCCTAAATACAAGGCAATGAATCATTTTGATGAATTTTACGGGTCCGTTTTCGGTAAGAAATGGGATCCCATGAAACGAGCATTATTACAAGGCCCGAAGTATGTAGCCGTGATCAACAATTACGGAGACGCCGAAGAGACTATGGAGTATCTTACGAATAGAGGTGCACATTGCCTAAAGAAACTAATAACAGTCCAGGAAGATTTTCATAAACAATATTCTGTGAACACAACAACCTCTGATCAAGAAGCACCAGTATACATAAATAAATTACAGCAATTAGCAGAGAAGGCACATTCTGATGAAATATCCAGTATTTATCCGAATACTGATAATAAGCCTGAAAGACTCGACTTCAAAGACGATGATCAAATTTCTGAAAGAAAGGAAATTACGGAGCAGAAGGAACCAATAAACAAATCATTAGATCAGGCGATAGCAGATGCTGTCATAGATGAGTCTCGAATGATTGACCCATCTATAGGCTTGACCTCAGAAGCGTTGTATCAGTATTTACCAGCAACTAAACTTAAAGGCATGAATGACTGGGTACCAGAGTCTACACACTATTCTTATTATTCAAAAATAGTTGATTTCCCCTTAACTATCGAGCCCGAGACTGAATTGCAGTACCCGGAACACCTGAAAGTGTTCACTTATGAAATGGACAGTGAACTTAAAATGTTCCCCGAACCGAAGAGATCACAAACAGGCGTGTTTAACTACTACCCCATGGATTGTGGCAGCGTGTTAGCCGTGCTAGCCCTGGGGTTGAGAGCCGGCGACAGGGTCCTGGACTTGTGCTCTGCTCCCGGGGGCAAGGCGCTGGTCGCGCTGCAGACCTTGTTACCGGACGTGGTCATATGTAACGACGTGTCTATATCTAGATCGAACAGAACACAAAGGGTGTTCAGCGACTATCTGTTCGATTTCGAGACGGGCAACAAGTGGCGGGAACGCGTCATCTTCAAAAGGGTCGACGGCAGAATGTTCACAGACGACCACGGCTTCGATAAGGTTCTAGTGGACGTGCCGTGCACTACGGACCGACACTCTGTGACCGAGGATGACAACAACATCTTCAGGCCGGACCGGGTGAAGGAGAGGCTCAAGATACCGGAGCTCCAGTCGCACTTGTTGGCAAACGCGCTTCGTTTAACGAAGGTCGGGGGGACGGTCGTGTACTCCACGTGCTCGCTCAGCCCCATACAGAACGACGGGGTGGTGCACATGGCCCTCAAGCAAGTCTTCGAGAGCAACGACATCATCGCCACCGTCGTAGATTTAACTCCAGCGGTCGCCGGCCTCAGCAGCACCCTGACGCTGGGCGCGGGCGCTGCGGCCCCCAAGTACGGGCAGCTCGTGACTCCGTCGCTTTCCGCCAACTTCGGGCCGTCGTACATCGCGAAACTTTTACGAATTAAATAA

Protein

MLQITNLIKKGPTTCAHLLRQSRHKSKTHWAKLRKKTGPKYKAMNHFDEFYGSVFGKKWDPMKRALLQGPKYVAVINNYGDAEETMEYLTNRGAHCLKKLITVQEDFHKQYSVNTTTSDQEAPVYINKLQQLAEKAHSDEISSIYPNTDNKPERLDFKDDDQISERKEITEQKEPINKSLDQAIADAVIDESRMIDPSIGLTSEALYQYLPATKLKGMNDWVPESTHYSYYSKIVDFPLTIEPETELQYPEHLKVFTYEMDSELKMFPEPKRSQTGVFNYYPMDCGSVLAVLALGLRAGDRVLDLCSAPGGKALVALQTLLPDVVICNDVSISRSNRTQRVFSDYLFDFETGNKWRERVIFKRVDGRMFTDDHGFDKVLVDVPCTTDRHSVTEDDNNIFRPDRVKERLKIPELQSHLLANALRLTKVGGTVVYSTCSLSPIQNDGVVHMALKQVFESNDIIATVVDLTPAVAGLSSTLTLGAGAAAPKYGQLVTPSLSANFGPSYIAKLLRIK

Similarity

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.

Uniprot

H9JD78   A0A212FIV6   A0A2W1BPB8   A0A194QBH5   A0A0L7LJ32   A0A067R711   + More
B3MN96   A0A0L0CIA8   A0A2J7QGN6   B4P312   B4ID59   A0A1W4WA59   B3N8C3   A0A1A9UTX1   Q9VPX3   A0A1A9XYT4   A0A1B0FML8   A0A1A9Z5Y0   B4MZJ2   A0A0M3QTB2   A0A1B0BDS8   B4KEU5   A0A0J9QTM3   A0A034WSU4   A0A0K8TW15   A0A1I8P3U3   B4LU36   A0A1I8NEZ8   A0A182P4P6   B4JDF1   D6WUZ7   A0A1Y1L176   A0A182KEE1   A0A3B0K8Q7   A0A182L033   A0A182V6N2   A0A0C9QZD8   A0A2H8TEQ7   B0VZZ5   B4GPY5   Q29LH4   W8C9M7   A0A1S4GYI0   A0A182IBU5   A0A182X184   A0A0P4VRK4   A0A1Q3EYA4   A0A1B0CDT9   T1I219   A0A182GCT4   Q5TQ80   Q16LU4   A0A2S2PVU4   A0A1L8DSR0   A0A182RCA0   A0A182JHT5   A0A023F1F7   J9JKX0   A0A182U3X8   A0A0A9WF62   A0A1J1HES6   A0A182VTQ1   A0A0K8T721   A0A026WRL7   A0A146LY16   A0A0L7QLS4   W5JE37   A0A182NB43   A0A182Y8G6   A0A182QRU7   A0A182ME90   A0A182F2M2   A0A151XJF3   A0A084VBE6   A0A195FMB6   A0A151IAE6   A0A195ENE9   A0A1B6J4V4   A0A1B0DIL9   J3JTZ9   U4UGI3   A0A088A6Q5   B0XLM9   A0A195BWZ2   E2BIY0   A0A0R3NTX1   F4WVK4   A0A158NEF4   A0A1W4WRA5   N6UM02   K7IRU8   A0A2A3EAB5   A0A232EHZ2   E2AHU0   A0A1B6LM09   A0A154PJH7   A0A0V0GBX4   A0A0M9A9N1  

Pubmed

19121390    22118469    28756777    26354079    26227816    24845553    + More
17994087    26108605    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    25348373    25315136    18362917    19820115    28004739    20966253    15632085    24495485    12364791    27129103    26483478    17510324    25474469    25401762    24508170    30249741    26823975    20920257    23761445    25244985    24438588    22516182    23537049    20798317    21719571    21347285    20075255    28648823   

EMBL

BABH01036245    AGBW02008325    OWR53659.1    KZ150100    PZC73523.1    KQ459249    + More
KPJ02340.1    JTDY01000989    KOB75186.1    KK852699    KDR18203.1    CH902620    EDV31053.1    JRES01000438    KNC31229.1    NEVH01014361    PNF27738.1    CM000157    EDW87219.1    CH480829    EDW45485.1    CH954177    EDV57310.1    AE014134    AY058685    AAF51412.1    AAL13914.1    CCAG010018214    CH963920    EDW77777.1    CP012523    ALC38579.1    JXJN01012663    CH933807    EDW12995.1    CM002910    KMY87427.1    GAKP01002105    GAKP01002104    JAC56848.1    GDHF01033645    GDHF01017139    JAI18669.1    JAI35175.1    CH940649    EDW65089.1    CH916368    EDW03321.1    KQ971357    EFA08513.1    GEZM01073753    JAV64857.1    OUUW01000004    SPP79918.1    GBYB01000001    JAG69768.1    GFXV01000759    MBW12564.1    DS231816    EDS37567.1    CH479187    EDW39657.1    CH379060    EAL34071.1    GAMC01006506    JAC00050.1    AAAB01008964    APCN01000743    GDKW01001546    JAI55049.1    GFDL01014765    JAV20280.1    AJWK01008229    AJWK01008230    ACPB03000292    JXUM01054804    KQ561837    KXJ77388.1    EAL39544.3    CH477890    EAT35305.1    GGMS01000277    MBY69480.1    GFDF01004729    JAV09355.1    GBBI01003589    JAC15123.1    ABLF02040227    GBHO01038487    GBHO01038486    JAG05117.1    JAG05118.1    CVRI01000001    CRK86493.1    GBRD01004483    JAG61338.1    KK107119    QOIP01000009    EZA58657.1    RLU18276.1    GDHC01007208    GDHC01006111    JAQ11421.1    JAQ12518.1    KQ414905    KOC59598.1    ADMH02001492    ETN62326.1    AXCN02000644    AXCM01000666    KQ982080    KYQ60408.1    ATLV01006582    ATLV01006583    KE524368    KFB35290.1    KQ981490    KYN41109.1    KQ978221    KYM96279.1    KQ978625    KYN29676.1    GECU01013515    JAS94191.1    AJVK01006145    AJVK01006146    BT126710    AEE61672.1    KB632286    ERL91453.1    DS234577    EDS34468.1    KQ976401    KYM92488.1    GL448543    EFN84325.1    KRT04441.1    GL888387    EGI61825.1    ADTU01013276    APGK01018190    KB740071    ENN81691.1    KZ288312    PBC28414.1    NNAY01004388    OXU17965.1    GL439579    EFN67019.1    GEBQ01015202    JAT24775.1    KQ434936    KZC12019.1    GECL01000648    JAP05476.1    KQ435709    KOX80057.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000037510    UP000027135    UP000007801    + More
UP000037069    UP000235965    UP000002282    UP000001292    UP000192221    UP000008711    UP000078200    UP000000803    UP000092443    UP000092444    UP000092445    UP000007798    UP000092553    UP000092460    UP000009192    UP000095300    UP000008792    UP000095301    UP000075885    UP000001070    UP000007266    UP000075881    UP000268350    UP000075882    UP000075903    UP000002320    UP000008744    UP000001819    UP000075840    UP000076407    UP000092461    UP000015103    UP000069940    UP000249989    UP000007062    UP000008820    UP000075900    UP000075880    UP000007819    UP000075902    UP000183832    UP000075920    UP000053097    UP000279307    UP000053825    UP000000673    UP000075884    UP000076408    UP000075886    UP000075883    UP000069272    UP000075809    UP000030765    UP000078541    UP000078542    UP000078492    UP000092462    UP000030742    UP000005203    UP000078540    UP000008237    UP000007755    UP000005205    UP000192223    UP000019118    UP000002358    UP000242457    UP000215335    UP000000311    UP000076502    UP000053105   

PRIDE

H9JD78    Q9VPX3   

Pfam

PF01189   Methyltr_RsmB-F

Interpro

IPR023267   RCMT        + More
IPR001678   MeTrfase_RsmB/NOP2       
IPR029063   SAM-dependent_MTases       

SUPFAM

SSF53335   SSF53335       

ProteinModelPortal

H9JD78   A0A212FIV6   A0A2W1BPB8   A0A194QBH5   A0A0L7LJ32   A0A067R711   + More
B3MN96   A0A0L0CIA8   A0A2J7QGN6   B4P312   B4ID59   A0A1W4WA59   B3N8C3   A0A1A9UTX1   Q9VPX3   A0A1A9XYT4   A0A1B0FML8   A0A1A9Z5Y0   B4MZJ2   A0A0M3QTB2   A0A1B0BDS8   B4KEU5   A0A0J9QTM3   A0A034WSU4   A0A0K8TW15   A0A1I8P3U3   B4LU36   A0A1I8NEZ8   A0A182P4P6   B4JDF1   D6WUZ7   A0A1Y1L176   A0A182KEE1   A0A3B0K8Q7   A0A182L033   A0A182V6N2   A0A0C9QZD8   A0A2H8TEQ7   B0VZZ5   B4GPY5   Q29LH4   W8C9M7   A0A1S4GYI0   A0A182IBU5   A0A182X184   A0A0P4VRK4   A0A1Q3EYA4   A0A1B0CDT9   T1I219   A0A182GCT4   Q5TQ80   Q16LU4   A0A2S2PVU4   A0A1L8DSR0   A0A182RCA0   A0A182JHT5   A0A023F1F7   J9JKX0   A0A182U3X8   A0A0A9WF62   A0A1J1HES6   A0A182VTQ1   A0A0K8T721   A0A026WRL7   A0A146LY16   A0A0L7QLS4   W5JE37   A0A182NB43   A0A182Y8G6   A0A182QRU7   A0A182ME90   A0A182F2M2   A0A151XJF3   A0A084VBE6   A0A195FMB6   A0A151IAE6   A0A195ENE9   A0A1B6J4V4   A0A1B0DIL9   J3JTZ9   U4UGI3   A0A088A6Q5   B0XLM9   A0A195BWZ2   E2BIY0   A0A0R3NTX1   F4WVK4   A0A158NEF4   A0A1W4WRA5   N6UM02   K7IRU8   A0A2A3EAB5   A0A232EHZ2   E2AHU0   A0A1B6LM09   A0A154PJH7   A0A0V0GBX4   A0A0M9A9N1  

PDB

4FP9     E-value=4.67249e-43,     Score=440

KEGG

101737539    K21970 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-] | (RefSeq) 5-methylcytosine rRNA m

GO

GO:0008168   GO:0003723   GO:0031167   GO:0005762   GO:0003676   GO:0006303   GO:0004003   GO:0045901   GO:0045905   GO:0005634   GO:0006334   GO:0003779   GO:0016021  

Length:

513

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.28618

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00932

outside

1  -  513

 

 

Pi

233.292259

Theta

169.235848

Tajima's D

1.526833

CLR

0.019096

CSRT

0.795560221988901

Interpretation

Uncertain