SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01135  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007466
Annotation
eukaryotic_translation_initiation_factor_4E-binding_protein_2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.487
 

Sequence

CDS
ATGTCAGCGTCACCTATCGCGAGGCAGGCCACCCACAGCCAATCGATTCCTTCAAGGAGGGTCCTGATCACGGATCCCGCTCAAATGCCTGATGTCTATTCCAGCACACCGGGCGGAACCATCTACTCCACCACTCCTGGAGGTACAAGAATAGTGTACGAAAGGTCGTTCATGTTATCCCTTCGGCAATCTCCGATTTCCCAAACGCCACCGCAATGTGCACTTCCCGCAGCCCTACTGAAGAATCCGTCTTCGGTACCCAACGCGCAGCCGGCCAGCACACAAAAACCTCGATCTAACTCGATATCATTCGACGAGTCGCAGGAAACCTTCAGCATGGATCTCTAA
Protein
MSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSISFDESQETFSMDL

Summary

EMBL
BABH01036233    DQ443244    ABF51333.1    KU987818    APC26145.1    KZ150100    + More
PZC73532.1    NWSH01002253    PCG68807.1    KQ460685    KPJ12808.1    KQ459232    KPJ02454.1    AGBW02014038    OWR42359.1    GDQN01011442    JAT79612.1    EU622640    ACC97566.1    JTDY01003595    KOB69287.1    GALA01000558    JAA94294.1    KQ977754    KYN00122.1    JXUM01019578    GAPW01006151    GAPW01006150    KQ560549    JAC07448.1    KXJ81927.1    GL888818    EGI57897.1    AXCN02002070    KQ979568    KYN20884.1    KQ976662    KYM78550.1    ADTU01014830    GALA01000557    JAA94295.1    KQ982314    KYQ57908.1    KK107135    QOIP01000006    EZA58036.1    RLU21633.1    GL435242    EFN73688.1    AAAB01008964    EAA12821.3    APCN01005201    GANO01004003    JAB55868.1    GL451202    EFN79749.1    NNAY01001986    OXU22381.1    KQ414612    KOC69174.1    KZ288349    PBC27385.1    JR052282    AEY61662.1    KQ436240    KOX67370.1    KQ981864    KYN34252.1    FJ392868    CH477229    ACJ15315.1    EAT47005.1    GGFM01000177    MBW20928.1    GEDC01016449    GEDC01006625    JAS20849.1    JAS30673.1    UFQS01000998    UFQT01000998    UFQT01001697    SSX08356.1    SSX28379.1    SSX31461.1    GECU01023078    JAS84628.1    GDAI01001217    JAI16386.1    GAMD01003314    JAA98276.1    GGFK01000560    MBW33881.1    GGFJ01010675    MBW59816.1    GGFK01000298    MBW33619.1    GGFK01000275    MBW33596.1    GECZ01026557    JAS43212.1    GBYB01015177    JAG84944.1    GGFL01006323    MBW70501.1    GEBQ01024197    GEBQ01013888    GEBQ01000462    JAT15780.1    JAT26089.1    JAT39515.1    KQ434823    KZC07257.1    AJWK01024330    DS231888    EDS43555.1    PYGN01001745    PSN33027.1    GFDF01004783    JAV09301.1    CVRI01000037    CRK93673.1    GANO01000419    JAB59452.1    AJVK01001066    AJVK01001067    GFDL01008200    JAV26845.1    GBGD01003525    JAC85364.1    GDKW01000911    JAI55684.1    ACPB03007356    GAHY01000927    JAA76583.1    KQ971363    EFA09088.1    GBBI01001388    JAC17324.1    GBHO01015994    GBRD01017029    GDHC01005726    JAG27610.1    JAG48798.1    JAQ12903.1    KK852699    KDR18182.1    GFTR01001950    JAW14476.1    JX175248    AFQ30996.1    GECL01003498    JAP02626.1    ADMH02001649    ETN61553.1    KY314161    AQS22595.1    AY349902    AAQ64853.1    CM000157    EDW87546.1    CH676463    EDW44619.1    CH954177    EDV57629.1    AY349904    AY349905    AY349906    AY349907    CM000361    CM002910    AAQ64855.1    AAQ64856.1    AAQ64857.1    AAQ64858.1    EDX03622.1    KMY87900.1    AF132557    AE014134    AF244353    AAD27856.1    AAF51100.1    AAF82476.1    AHN54103.1    CH916368    EDW03993.1    AY349903    AY349908    AAQ64854.1    AAQ64859.1    GALX01001418    JAB67048.1    CH940649    EDW64031.1    EDW64032.1    OUUW01000004    SPP79178.1    JRES01000842    KNC27789.1    GFDG01001392    JAV17407.1    GAMC01015109    JAB91446.1    EDW03994.1    CH902620    EDV31193.1   
Pfam
PF05456   eIF_4EBP        + More
PF10249   NDUFB10
Interpro
IPR008606   EIF4EBP        + More
IPR019377   NADH_UbQ_OxRdtase_su10       
IPR039993   NDUFB10       
PDB
6BCX     E-value=6.15098e-09,     Score=138

Ontologies

Topology

Length:
115
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01469
Exp number, first 60 AAs:
0.01469
Total prob of N-in:
0.25770
outside
1  -  115
 
 

Population Genetic Test Statistics

Pi
220.944372
Theta
149.986615
Tajima's D
1.600715
CLR
0.216519
CSRT
0.805009749512524
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26280517 NNNAFIVK 100.00 4e-05
28467696 NPSPDSYSSTIIVDADGR 100.00 4e-05
28556443 ISDLEYDNFK 100.00 4e-05
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