Gene

KWMTBOMO01133

Pre Gene Modal

BGIBMGA007468

Annotation

PREDICTED:_chromosome_transmission_fidelity_protein_18_homolog_[Papilio_xuthus]

Location

Bomo_Chr3(-):3017927-3069396      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.522

CDS

ATGAGTGACTATCCAGATCCGGACGAAGAATATGAACTTATGTACGCTGATGAACTGGAATTGATGCAAGAACAAGATGCTCTAACAGACACTAATGTAGTTGCAAAATCAAAAATTGCCAAAAGAAGCCTAGATTTTTCAAATCACATGTCAAGCCAACCAGCACCATCTACTCTCATAACAAAAACTACAAGTAGTACTGAAACACCTGTAACACCAAACGAAGATGCTGATACCGAAACCATCATCAATAGTCAGTCTTCAGTCATATTGCAACCAATGGAAGAGGCCTTGGTGTCCAATAAACGTACTGCAGATGAATTGTTCGGCGATATTGAAGATATAGACTTTGATGATAAAGAAATGCCAAACAAAAGATTTAAGAGTGAAGAGGAAAATGATTTAGAATTAATAAACAAGATTATAGAGGGAAGGAGGTTGCGGCAGTTGCTAGTGGAACCAAGTAATAGACTCCAGGGAACAAATAAACCCAAGTATGATGTGAAAGGAAATATGTCTTACAATATACCAAGGTGGGCTTTTGTACCTCTAACAAATTTTGAAGGTGACAGAATATACATCAGGTTAGAATCTGAAGAATCATGGGAAAATAATCTAAATATTAATATAGAACAGCCATCTCTACATGCAATGTATGCTAATGCTTGGGAGGAAGCTAGGAAAATTTTAGAAAAAAAACAAGAGCGTCTAATAGAAAACGAAAATACAGAAGAAGTGGTAACTATTGAAGAAGATATGGAGACAAAAGATGCACAGCTATGGGTGGATAAGTACAGGCCCCAGTCGTATGTAGATCTATTATCTGAAGAACCGGTAAACAGAGCTCTATTACACTGGTTACATTTATGGGATAAGATCGTTTTCAAAAAAGAAGTCAAAACGAAAGACCCCCAACAGCGGAACAGCTTCGTCAAGCGCACGGGACAGTTCCAACTGTTCAACAAATGGAAAGGAAAGACGGATAACGAGCCCGAGTTAGACGAAGACGGAAGACCTCATCACAAGGTGGCGCTGCTGTGCGGCCCTCCCGGAGTGGGGAAGACGACCCTGGCACATTTATTAGCTAAACTAGCCGGTTACCGACCGGTAGAAATAAACGCATCTGATGAGCGAAGTACGGACGCGTTCCGGACAGCCCTGCAAAGCGCCACGCTTATGAGATCTGTGCTGGACGCCGAGAAAAGACCGAACTGTTTGATATTAGATGAAATAGATGGTGCCCCCTTGCCGACGATCGAGTTGTTAGTGAAGTGGTGTACGGCAGCCATCGACAGCGGGAAGAAGAAGACCAAATCGCAGCCTCTGAGACGTCCCATTATTGCTATATGTAATGACTTGTACGCTACATCATTGAGGCCTTTGAGAGCGGTGGCGCTGTTGGTGCGCGTGGGCGGCGCGTCAGTGTGCCGGCTGTCGGCGCGGCTGGCGGCCGTGTGCGCGCGCGAGGGGCTGCTGGCGGCGCCGCACGTGCTCACCGCGCTCGCCACGCGCGCCCAGGGCGACGTCCGAGCCGCCATACAAGTTCTCAGCTTCATTAAAGCCAGAGCTAGAGCACAGTTAAAGGTAGAGGACGTTGAGAACGCAGCCATTGGCACCAAGGATTGCAACAAAACATTAATGCAAGCGTTACAAGCGGTATTCACGATCGACGACAAAGAACCGGAGGCCATATTGAAGATTGTACAGGCAGCCGGGGAGTATGACAGAATAGCGGACGGAATATTCGAGAATTACATGGCCGCCCGCGTGGACGCGCGGATGCTGATAGCTTGCGAGACTCTATCGTGGCTGCGCTTACTGGACGCCATTAGCTCGTGGACGATGAGGACCCAGAACTATTCGTTGTACGGGGCCCTGTCGTTATGTATAGCCAGGTGTCACAGGGTACTCGCATCGAGGGCCCCGCAAAGGGTCAAATTTCCTACACAGGCACAAGAGGCCTACAGAAAGAAATTAGAATTGGAGAGTATAGTGAATTCGGTATGGCGAGGCAGCGTGCCGTCAGTGGCACTTTCTAGAAACTCTTTGAAGGTTGACGTGTTACCGTTGCTGCCCTATCTGTTGTCGCCGTCACTACGCACCGCTAACGTACAGTTGTGCAGCGAGAGCGAGAGGAGGTCGCTGGGCGCATGCGCGGGCGCGCTGTGCGACTACGGGCTGCGGTACGTGCAGCAGCGGACCGCCGACGGACTCTACGCTTTCGTTTTGGAACCGGACATTAACAGATTAGCGTTTTACGGTAACGAAGACAGAGTCCGTCCGCCGCCGGCCGTCAGACAAGCCATCGCCCGGGCACAGCAGCTAGAAATCATACGAAGGAACGAGGAAATGACTGGTCGAGCTCCAAGCACAACTACATCAGATAGTAAAAAGCCAGTGGAGTCCAAGAAGCCAGCCACGACAATGAGGGAGCAGGACGCCGCTATACCCAACCACATGCAGCGCTTGAAACCGAAAGAAGTTACGAAAAGCACACCCCAGGTACACAAAGACTTCTTCGGTCGTATAGTTCCGCTGTCACAAGTCAAGCGACAAGATGCTTTGCCGGATGTTATATCTTCCAGCAGTGTATTCTACCAGTACAGAGAAGGCTTCAACAACGCGGTCAGAAGAAAAGTTCGCCTCCGTGATTTGCTGTAG

Protein

MSDYPDPDEEYELMYADELELMQEQDALTDTNVVAKSKIAKRSLDFSNHMSSQPAPSTLITKTTSSTETPVTPNEDADTETIINSQSSVILQPMEEALVSNKRTADELFGDIEDIDFDDKEMPNKRFKSEEENDLELINKIIEGRRLRQLLVEPSNRLQGTNKPKYDVKGNMSYNIPRWAFVPLTNFEGDRIYIRLESEESWENNLNINIEQPSLHAMYANAWEEARKILEKKQERLIENENTEEVVTIEEDMETKDAQLWVDKYRPQSYVDLLSEEPVNRALLHWLHLWDKIVFKKEVKTKDPQQRNSFVKRTGQFQLFNKWKGKTDNEPELDEDGRPHHKVALLCGPPGVGKTTLAHLLAKLAGYRPVEINASDERSTDAFRTALQSATLMRSVLDAEKRPNCLILDEIDGAPLPTIELLVKWCTAAIDSGKKKTKSQPLRRPIIAICNDLYATSLRPLRAVALLVRVGGASVCRLSARLAAVCAREGLLAAPHVLTALATRAQGDVRAAIQVLSFIKARARAQLKVEDVENAAIGTKDCNKTLMQALQAVFTIDDKEPEAILKIVQAAGEYDRIADGIFENYMAARVDARMLIACETLSWLRLLDAISSWTMRTQNYSLYGALSLCIARCHRVLASRAPQRVKFPTQAQEAYRKKLELESIVNSVWRGSVPSVALSRNSLKVDVLPLLPYLLSPSLRTANVQLCSESERRSLGACAGALCDYGLRYVQQRTADGLYAFVLEPDINRLAFYGNEDRVRPPPAVRQAIARAQQLEIIRRNEEMTGRAPSTTTSDSKKPVESKKPATTMREQDAAIPNHMQRLKPKEVTKSTPQVHKDFFGRIVPLSQVKRQDALPDVISSSSVFYQYREGFNNAVRRKVRLRDLL

Uniprot

H9JD71   A0A2A4JBK0   A0A2H1WQI1   A0A194QBF0   A0A194RAB7   A0A1B6LVK8   + More
A0A1S4FJ24   A0A1B6J544   Q16Z43   A0A1B6HXM3   A0A1B6IFT1   A0A1Q3G079   A0A1Q3G0A2   A0A2S2QED8   A0A1I8PLA4   D6WXA2   A0A034VCE5   A0A1I8N525   B4KJY8   A0A2H8TMV2   B4NYE6   A0A0K8VP61   A0A0M4E7S0   A0A1B6D4D8   Q16Z42   Q8T3K3   A0A2S2NZK5   B4JQJ0   B4LRR8   A0A0A9W048   A0A1W4V823   Q95WV5   B4MVB5   Q8IQ05   B3N370   B4I327   X1WIE2   A0A0J9QV88   A0A3B0JUC2   U4UF04   B3MP61   A0A1Y1N551   Q29ME9   W8BNZ8   A0A182JLN0   A0A0T6B2L9   A0A182QTV9   A0A1A9ZQR2   A0A182VU88   A0A084VYL9   B4Q9P5   A0A023F1H3   A0A182VK68   A0A0L0BZE7   A0A1W4WCS3   A0A1S4H083   A0A182Y947   Q7PWS6   A0A182F5Q6   A0A336M1C1   N6UB29   A0A1J1IZN7   A0A1A9V0X3   A0A232FD56   A0A182RUR9   A0A182LN03   A0A182K417   A0A1S4FJ93   K7ISX5   A0A182MWD8   A0A088AC10   A0A0M9A6R5   A0A182P692   A0A131YFD6   A0A224YQ95   K1PLR8   A0A026W7S8   A0A293M885   A0A182I758   E2C5Y3   A0A1E1XDK9   H2LY12   A0A0L8GP69   V4AVS1   A0A3P8N8B2   A0A3P9C0F4   A0A0L8GPM4   A0A3P9JAE9   A0A3P9KU70   B7QM52   I3J5K6   A0A3B3VR70   A0A0L7QPR2   A0A3B3B7D1   A0A087Y8Y8   A0A210QQS4   V5IDU9   A0A1W5BEK2  

Pubmed

19121390    26354079    17510324    18362917    19820115    25348373    + More
25315136    17994087    17550304    25401762    11161570    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    23537049    28004739    15632085    24495485    24438588    25474469    26108605    12364791    25244985    28648823    20966253    20075255    26830274    28797301    22992520    24508170    20798317    28503490    17554307    23254933    25186727    29451363    28812685    25765539   

EMBL

BABH01036228    BABH01036229    NWSH01002253    PCG68810.1    ODYU01010268    SOQ55257.1    + More
KQ459249    KPJ02315.1    KQ460685    KPJ12806.1    GEBQ01012255    JAT27722.1    GECU01013445    JAS94261.1    CH477499    EAT39908.1    GECU01028297    JAS79409.1    GECU01021928    JAS85778.1    GFDL01001836    JAV33209.1    GFDL01001839    JAV33206.1    GGMS01006850    MBY76053.1    KQ971361    EFA08812.2    GAKP01019764    JAC39188.1    CH933807    EDW12591.1    GFXV01003688    MBW15493.1    CM000157    EDW87579.1    GDHF01011969    JAI40345.1    CP012523    ALC38865.1    GEDC01026847    GEDC01016751    JAS10451.1    JAS20547.1    EAT39909.1    AY094968    AAM11321.1    GGMR01009517    MBY22136.1    CH916372    EDV99170.1    CH940649    EDW64670.1    GBHO01045364    GBHO01045361    GBHO01045360    GBHO01045359    JAF98239.1    JAF98242.1    JAF98243.1    JAF98244.1    AF287273    AAL02426.1    CH963857    EDW76460.1    AE014134    AAN10380.2    CH954177    EDV57669.1    CH480820    EDW54172.1    ABLF02036818    ABLF02036821    CM002910    KMY87958.1    OUUW01000004    SPP79070.1    KB632064    ERL88495.1    CH902620    EDV31227.2    GEZM01014729    JAV92020.1    CH379060    EAL33745.2    GAMC01003690    JAC02866.1    LJIG01016173    KRT81397.1    AXCN02002086    ATLV01018378    KE525231    KFB43063.1    CM000361    EDX03656.1    GBBI01003851    JAC14861.1    JRES01001205    KNC24619.1    AAAB01008984    EAA14898.4    UFQS01000240    UFQT01000240    SSX01870.1    SSX22247.1    APGK01035573    APGK01035574    KB740928    ENN77861.1    CVRI01000064    CRL05020.1    NNAY01000433    OXU28423.1    AAZX01004589    AXCM01001391    KQ435724    KOX78380.1    GEDV01010513    JAP78044.1    GFPF01006783    MAA17929.1    JH818838    EKC19774.1    KK107348    EZA52142.1    GFWV01012363    MAA37092.1    APCN01003367    GL452875    EFN76642.1    GFAC01001846    JAT97342.1    KQ420929    KOF78818.1    KB200521    ESP01463.1    KOF78817.1    ABJB010436061    ABJB010537462    ABJB010566634    DS969253    EEC19924.1    AERX01039553    AERX01039554    KQ414806    KOC60628.1    AYCK01023044    AYCK01023045    AYCK01023046    NEDP02002358    OWF51090.1    GANP01011307    JAB73161.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000008820    UP000095300    + More
UP000007266    UP000095301    UP000009192    UP000002282    UP000092553    UP000001070    UP000008792    UP000192221    UP000007798    UP000000803    UP000008711    UP000001292    UP000007819    UP000268350    UP000030742    UP000007801    UP000001819    UP000075880    UP000075886    UP000092445    UP000075920    UP000030765    UP000000304    UP000075903    UP000037069    UP000192223    UP000076408    UP000007062    UP000069272    UP000019118    UP000183832    UP000078200    UP000215335    UP000075900    UP000075882    UP000075881    UP000002358    UP000075883    UP000005203    UP000053105    UP000075885    UP000005408    UP000053097    UP000075840    UP000008237    UP000001038    UP000053454    UP000030746    UP000265100    UP000265160    UP000265200    UP000265180    UP000001555    UP000005207    UP000261500    UP000053825    UP000261560    UP000028760    UP000242188   

PRIDE

H9JD71    Q8T3K3    Q95WV5    Q8IQ05   

Pfam

PF00004   AAA        + More
PF08519   RFC1
PF00650   CRAL_TRIO
PF00014   Kunitz_BPTI
PF08240   ADH_N

Interpro

IPR027417   P-loop_NTPase        + More
IPR003959   ATPase_AAA_core       
IPR003593   AAA+_ATPase       
IPR013725   DNA_replication_fac_RFC1_C       
IPR036273   CRAL/TRIO_N_dom_sf       
IPR036865   CRAL-TRIO_dom_sf       
IPR036880   Kunitz_BPTI_sf       
IPR002223   Kunitz_BPTI       
IPR001251   CRAL-TRIO_dom       
IPR020843   PKS_ER       
IPR013154   ADH_N       
IPR011032   GroES-like_sf       
IPR036291   NAD(P)-bd_dom_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF57362   SSF57362       
SSF46938   SSF46938       
SSF52087   SSF52087       
SSF51735   SSF51735       
SSF50129   SSF50129       

Gene 3D

3.40.525.10     4.10.410.10    

CDD

cd00170  SEC14
cd00109  KU

ProteinModelPortal

H9JD71   A0A2A4JBK0   A0A2H1WQI1   A0A194QBF0   A0A194RAB7   A0A1B6LVK8   + More
A0A1S4FJ24   A0A1B6J544   Q16Z43   A0A1B6HXM3   A0A1B6IFT1   A0A1Q3G079   A0A1Q3G0A2   A0A2S2QED8   A0A1I8PLA4   D6WXA2   A0A034VCE5   A0A1I8N525   B4KJY8   A0A2H8TMV2   B4NYE6   A0A0K8VP61   A0A0M4E7S0   A0A1B6D4D8   Q16Z42   Q8T3K3   A0A2S2NZK5   B4JQJ0   B4LRR8   A0A0A9W048   A0A1W4V823   Q95WV5   B4MVB5   Q8IQ05   B3N370   B4I327   X1WIE2   A0A0J9QV88   A0A3B0JUC2   U4UF04   B3MP61   A0A1Y1N551   Q29ME9   W8BNZ8   A0A182JLN0   A0A0T6B2L9   A0A182QTV9   A0A1A9ZQR2   A0A182VU88   A0A084VYL9   B4Q9P5   A0A023F1H3   A0A182VK68   A0A0L0BZE7   A0A1W4WCS3   A0A1S4H083   A0A182Y947   Q7PWS6   A0A182F5Q6   A0A336M1C1   N6UB29   A0A1J1IZN7   A0A1A9V0X3   A0A232FD56   A0A182RUR9   A0A182LN03   A0A182K417   A0A1S4FJ93   K7ISX5   A0A182MWD8   A0A088AC10   A0A0M9A6R5   A0A182P692   A0A131YFD6   A0A224YQ95   K1PLR8   A0A026W7S8   A0A293M885   A0A182I758   E2C5Y3   A0A1E1XDK9   H2LY12   A0A0L8GP69   V4AVS1   A0A3P8N8B2   A0A3P9C0F4   A0A0L8GPM4   A0A3P9JAE9   A0A3P9KU70   B7QM52   I3J5K6   A0A3B3VR70   A0A0L7QPR2   A0A3B3B7D1   A0A087Y8Y8   A0A210QQS4   V5IDU9   A0A1W5BEK2  

PDB

1SXJ     E-value=8.30709e-10,     Score=156

KEGG

101736847    K11269 chromosome transmission fidelity protein 18 | (RefSeq) chromosome transmission fidelity prote

GO

GO:0005524   GO:0006260   GO:0003689   GO:0005663   GO:0005634   GO:0008283   GO:0016021   GO:0004867   GO:0016491   GO:0006355   GO:0043565   GO:0043022   GO:0045901   GO:0045905   GO:0006334   GO:0003779  

Length:

886

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00318

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1  -  886

 

 

Pi

200.550011

Theta

174.175488

Tajima's D

0.619442

CLR

0.468277

CSRT

0.543772811359432

Interpretation

Uncertain