SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01132
Pre Gene Modal
BGIBMGA007471
Annotation
hypothetical_protein_KGM_16069_[Danaus_plexippus]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.357
 

Sequence

CDS
ATGGATACAAGTTATTCATATCATCCGGCGATACACGATGATACGTTCGTACGTCGGAAACAGAGGCGGAACCGCACCACATTCACTTTACAGCAGCTTGAAGAATTGGAGACGGCGTTCGCCCAGACTCATTATCCGGACGTATTCACACGAGAGGATCTAGCTCTCAAAATCAACCTCACGGAGGCCAGAGTGCAGGTCTGGTTCCAGAATCGCCGAGCAAAATGGAGGAAAGCTGAACGATTGAAAGAAGAACAAAGAAAGCGAGAAGGAACCGATGTGCTGACCAAGAGAGACCCCGCTGATGATAAGGGGTCGTCGGAATGCGGAATGTCTCGAGGGTCTGCAGAGGCGTCTCCCGTGTCTGCGGCGGCGTCACCCCGCGCGTCCCCCCCGGTCACCCCCGGCTCTCCGCGTCGATCGCCAACACGTTCCCCTAACAGATCACCTAGACTTGAAAGGTCCGAAACTAGCTGTGCATCTCCGGCTCCGTCTGTCGGCAGCGCCGGGTCCAGAGAAGCTGTGATGGAGCAACGACCCCCACATCACATCTTCTCTCCTTTCGACCATTCCGGTGCGTTCCGTTCGTCGCCAGGTGGCGCGGCGAGCGAGTCTGCCGCTTCTCACCCACCGCCCCTCTTCCTGCCCCCCCACTTGTCACATCTGTCGCAGCATCTCAATCATTTATCACAGCCGTTCTTCCCATTGAAAGGCTGGGGTGCTCCGTGTCCGTGCTGTCCCAAAGAGGAAGCGAGGTCGTCGAGCGTGGCCGAGCTGCGGCGTAAAGCTCACGAGCACTCCGCCGCGCTGCTGCACTCGCTGGCCAGCTTCCAGTCGCGGGCCTTACTGCCGCTGCCGCTGCACTTACCGCCGCTGCCACTGGCCTTACTGCCGCACGACGCGCAGCACCAACCGAACTCCGCGCCGACCGAATCACCGAAGCACCTTGAATAA
Protein
MDTSYSYHPAIHDDTFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLALKINLTEARVQVWFQNRRAKWRKAERLKEEQRKREGTDVLTKRDPADDKGSSECGMSRGSAEASPVSAAASPRASPPVTPGSPRRSPTRSPNRSPRLERSETSCASPAPSVGSAGSREAVMEQRPPHHIFSPFDHSGAFRSSPGGAASESAASHPPPLFLPPHLSHLSQHLNHLSQPFFPLKGWGAPCPCCPKEEARSSSVAELRRKAHEHSAALLHSLASFQSRALLPLPLHLPPLPLALLPHDAQHQPNSAPTESPKHLE

Summary

Similarity
Belongs to the paired homeobox family.
Pfam
PF00046   Homeodomain        + More
PF03826   OAR
Interpro
IPR001356   Homeobox_dom        + More
IPR017970   Homeobox_CS       
IPR003654   OAR_dom       
IPR009057   Homeobox-like_sf       
SUPFAM
SSF46689   SSF46689       
ProteinModelPortal
PDB
3A01     E-value=7.66323e-19,     Score=229

Ontologies

Topology

Subcellular location
Nucleus  
Length:
317
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0033
Exp number, first 60 AAs:
0
Total prob of N-in:
0.02856
outside
1  -  317
 
 

Population Genetic Test Statistics

Pi
257.449081
Theta
170.332142
Tajima's D
1.641925
CLR
0.345076
CSRT
0.820958952052397
Interpretation
Uncertain
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