Silkworm Genome Informatics Database

Gene

KWMTBOMO01120

Annotation

PREDICTED:_uncharacterized_protein_LOC105385054_[Plutella_xylostella]

Location

Bomo_Chr3(+):2560132-2562539 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.94

CDS

ATGTTCCTCACAGATTGTGATCTATGGGACTGTGTAAGTACAGACACACTTGATACTCCTGAATTTAAAAAGAGAGATAGTAAAGCAAGAGCAAAAATATGTCTACTCTTGGAAGAAAACATTTTCCCAATTGTTACCGGTGCCGTAACGGCAAAACAAACATGGGATGCGTTAGAAAAGGCCTACGCCGATGGCGGACTGTTGAGACGACTCACTTTATTAAGAAAATTATTTAATTTGAAATTATCATGTTTCGTAAATATCGAAGCATACATCAATGAAGTGCAGGCGACAAGTCAGGCTTTACAGCGAATCAAATCAGGACTGGATGATGAATTCATTGGGATCATAATGTTAGCTGGGTTGACCGAGGAATACAATCCTTTGGTGATGGCGTTGGAACATTCTGGAAGGAAATTAACTTCAGAAGCGGTCATATCTGCTCTAATGAAGGAAGGACAGCTCAAGCAGCCGGCAGTTGAAATGGATTCTGTGTTAGTGTCTAATAACGAAAAACCTAGTAGTAGTACGAAAAAGGCAATAATATGTCATTTTTGTAAAAAGAAAGGTCATTTTAAATGGCAATGTAAATTTTATAAAGATAGGGATAAGAAAGGTAATGCAAATGTATGCGTAGCTCAAAAGGAGACTAATGATTTTATTACCTTACTCTCTAATATGGGAAAGTCGAGAAATTGGATTATAGATTCTGGGGCAACATCTCATATGACATCATCAGATAATGTTTTAGTAAATGCTAAAGGTGGTTACCGGAAGTATATAACTACAGCTAATAATGAGAAAATATTATCTAAGGTAAAGGGTGATGTATTGATGCCTAATTATAAGTTAAAGTTTGAGAATGTTTTGTACATACCAGATTTGATAACAATTTACTTTCTGTCTCCAACCATGGCTATCTCAGACAAAGTTCCTGAAGAAGTGTGGTCAGGTGAACGAGTGGATATCACCAATCTCAAGGTTTTTGGTAGTAAAGCTCAAGTACTCATTAAGGGAAACAATAGAAGGAAATTTGATTCAAAGTCAAGAGAATTAATTATGATTGGCTATAGTTTGAATCAAAAAGGCTATCGTTTCGTGGATATTAAGAATCCAACTCGGCTAATAATCGCTCGGGACGCAGTATTTTTTGAAAATGTTCAGAATTATGGCAAAGAGACCATTCATCTGGAGTCGGTGGATAGTATTCAGAACAATGAAATTTCAATAAATAGTAATTATCATCCGGTTATGTCTCAGGTTCCTGTCCATATAGGAGATCCTGATGCAGTGGGGGAATTGGAAATGAATACTCCTGATCCAACCACTTCTACAAATGAATCAACCACCTCTACAAACGAACGTCGTTATTCAAAGAGGATTAGACGTCCCAAAATACAAGAAGATATGATCTATAATTTTTTGATTACCGAGGGATCAGATCCTAAGTCAGTTGAGGACACATTGGAACGTTCGGATCGAGAGTTATGGCACACAGCCATGTTAGATGGATACAATTCGCTGATGCAAAACAAAAACAGTGAACAGAATTAA

Protein

MFLTDCDLWDCVSTDTLDTPEFKKRDSKARAKICLLLEENIFPIVTGAVTAKQTWDALEKAYADGGLLRRLTLLRKLFNLKLSCFVNIEAYINEVQATSQALQRIKSGLDDEFIGIIMLAGLTEEYNPLVMALEHSGRKLTSEAVISALMKEGQLKQPAVEMDSVLVSNNEKPSSSTKKAIICHFCKKKGHFKWQCKFYKDRDKKGNANVCVAQKETNDFITLLSNMGKSRNWIIDSGATSHMTSSDNVLVNAKGGYRKYITTANNEKILSKVKGDVLMPNYKLKFENVLYIPDLITIYFLSPTMAISDKVPEEVWSGERVDITNLKVFGSKAQVLIKGNNRRKFDSKSRELIMIGYSLNQKGYRFVDIKNPTRLIIARDAVFFENVQNYGKETIHLESVDSIQNNEISINSNYHPVMSQVPVHIGDPDAVGELEMNTPDPTTSTNESTTSTNERRYSKRIRRPKIQEDMIYNFLITEGSDPKSVEDTLERSDRELWHTAMLDGYNSLMQNKNSEQN

Uniprot

A0A1B6E9D0 A0A1W7R6D6

EMBL

GEDC01002834 JAS34464.1 GEHC01000965 JAV46680.1

Pfam

PF13976   gag_pre-integrs        + More
PF00665   rve
PF07727   RVT_2
PF13961   DUF4219

Interpro

IPR013103   RVT_2        + More
IPR001878   Znf_CCHC
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR039537   Retrotran_Ty1/copia-like
IPR036397   RNaseH_sf
IPR025724   GAG-pre-integrase_dom
IPR025314   DUF4219
IPR036875   Znf_CCHC_sf

SUPFAM

SSF53098 SSF53098 + More
SSF57756 SSF57756

Gene 3D

3.30.420.10

ProteinModelPortal

A0A1B6E9D0 A0A1W7R6D6

KEGG

NA

GO

GO:0003676 GO:0008270 GO:0015074 GO:0000943 GO:0005634 GO:0008152 GO:0003677 GO:0006334 GO:0003779 GO:0016021

PANTHER

PTHR11439

Length:

517

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0532100000000001

Exp number, first 60 AAs:

0.03351

Total prob of N-in:

0.00337

outside

1 - 517

Pi

277.350594

Theta

162.372548

Tajima's D

2.483373

CLR

0

CSRT

0.943902804859757

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree