Gene

KWMTBOMO01112

Pre Gene Modal

BGIBMGA007435

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_TBC1_domain_family_member_31_[Bombyx_mori]

Location

Bomo_Chr3(+):2476022-2478463      View in EpiBrowser

Full name

TBC1 domain family member 31      

Alternative Name

WD repeat-containing protein 67

Location in the cell

PlasmaMembrane   Reliability : 2.409

CDS

ATGGAATTATCACGAATTGAAAAATTTGATATAAAATTAAAATCCAAACCAAAGGATGGAGTTATACTTCAATTGCATCACACCGTGCGAAGTTCCAGTGGAGAAAGTCATCGCATTAGATTCACGAGGGGCGCGTTCAGTGATAATAATGAGAAACTAGCTTGTAGCGATACCGCTGGTAATGTTTTCATTATCGATTTTTCTGATCTAAAATTCTGGAAGCTAAACGGCGTAGGCCCGTGTACTTGCCTTCAGTTCGAAAATAGCAAACACGACAATTTAGTGGTAGCCGCCTCTAAAAATTTTGAGATAAATTTTTTTGATATCGAAACTGGAAAATCAAATATTACCCTCAACGGACACACAAACACTGTAAAACATATTTCTTTCTCAAATAACAAGGCCAATAATCTTCTCACGGCTAGTCAAGCAGAAGCTATTCTGTGGGAAATGTCTAACTTCACTAAATATTTTACTTTGAATACATTTGTGGGTGCACAAATACAAGAAATCATGTTCACTCCCGGAGGTGACTATTTAGTAGCTTGCTTCAAGAATGACACCATACAAATATGGAAGAATGAGACCATGAAATCGGTCAAGCAGATAATACCAAGTGAATTAAAGCATATGAAAAGTATTGCTTTCACAATGAATGGTCGAGCAATGGCAATGGCGGGACTCAGTCCTGTACTTATTTTATTCAATATGGATACATGGACTACAATTAAATCAATCAATATGACAAAATACAACATTCTTGGTGCACATCAGGTTGCATTCATTCCACAGGTATTTGATGGTGGTGCCAATAAGATTCTGGCTATCCTCAATAGTGTCTGCACGTTGAGCTTCTTAAATCTAGAAACCTTAGGAATTATATACACAATAAAACTAGATTCATCTGGCATTAAAAGATTTGCTGTCAGTCAAACTGGAAAATATTTCTTGTGTATTTTGGAATTAGGGGAAGTGAACATCTATAATTCATCTGAAGTCTTAGAGACGGTTCCTAATAAATCTATAAAGACTGAAAAGAGAGAGATTCCGTGCATTTCTTGTGTCAAGTCATTGTCACCAAAGCATTCAATATCAAAATCTAAAATAGAACAAAAAATGCGAACCTGCATGGACAGCGCCAGGTTAAGAAGGATATTAATACAGTATGGAGAATACCCTGACAAATTTAGATCTGTCATTTGGAGGTCACTCCTCAATACACCTAGAAACAGAACTGCCTATTCAGCTTTAGTCGATAAAGGTATTCATCCGTCTTATAGGAATATAGAGGAACAATTCACAATACATAGTTCTACGACACTTAAAAATTTGAAGCGATTACTATCATGTCTCGCCCACTGGTGTCCACTATTTGGGGTTATAAAATTCCTGCCGGGCTTCGTCTTTCCGTTTGTAAAAGTGCTGCAAAAAGATCCCCTTTTATTATTTGAATGTGTAGCCACCATACTCTTGAATTACTGCCAATTGTGGTTTGAGTATGCACCTTTTCCACCTATTAGCGTTCTAGCTATGATCGAGAATACTTTAGCAGAACATGATCCACAACTCTTGAAACATTTTTGTGAAACAGGCGTGACAAGCCAAACTTATGCACTCCAAATATTAGAAACTGCATTCAGTGAAGTGCTGACTTGCACTGAGTGGCTAATACTCTGGGATCACATTCTCAGCAATGAACCGTCTTTTATTCTCATGGCTGTTGTCTCATACAACATAGTGCAGAGAAACGCCATCAAAAAATTTAAGACTTGTGAGCAATTTGAAAACTTTTATCATTTACAAAATCCTTTAGACAAAAAAACATTTTTGAAGAAGACATATTTAATTATGAACGATACAAGTACTGATATACATCCCAGGAAATATTTAAATAATTTCGCACCTCTAGAAAAGGGTATGTGTTACCAACAATTCACCGGATATCCTAAAACAACTATTTGCCTTAAACTTGCGAATAGAGATGTAAATAAATCCAAACCCACAGATAAAAATACTCTAAAAGAATTAACAGTGAAAAGTCAAGAAAGAGAAATTAGAGATGGAATGAAAAGCAATTCGAATATGTCTTATGATAGTACAAAAGAAGCGAGAGGCGAAAACGTAATAGATAGAGAAAACAGAAAATCACACAAAAAAAGCGAAAAGGACCATTGCAGTACCAAAGATGAACTAGTCACTAGTATATTGCAACCAGCTGGTATACAAATTGACAAAGATAAATTACACAGTAATGAAGCCACAGTTAATAAAACCGGCAGACACTCAAGACAAAAGACAAGAAAAAAATCTGCTAACTACGATTTAGAAAACGAAGTGGAAAGGCTCTTTGAAACACAAAGCAGATCTGATAAATCGGCGAAATAA

Protein

MELSRIEKFDIKLKSKPKDGVILQLHHTVRSSSGESHRIRFTRGAFSDNNEKLACSDTAGNVFIIDFSDLKFWKLNGVGPCTCLQFENSKHDNLVVAASKNFEINFFDIETGKSNITLNGHTNTVKHISFSNNKANNLLTASQAEAILWEMSNFTKYFTLNTFVGAQIQEIMFTPGGDYLVACFKNDTIQIWKNETMKSVKQIIPSELKHMKSIAFTMNGRAMAMAGLSPVLILFNMDTWTTIKSINMTKYNILGAHQVAFIPQVFDGGANKILAILNSVCTLSFLNLETLGIIYTIKLDSSGIKRFAVSQTGKYFLCILELGEVNIYNSSEVLETVPNKSIKTEKREIPCISCVKSLSPKHSISKSKIEQKMRTCMDSARLRRILIQYGEYPDKFRSVIWRSLLNTPRNRTAYSALVDKGIHPSYRNIEEQFTIHSSTTLKNLKRLLSCLAHWCPLFGVIKFLPGFVFPFVKVLQKDPLLLFECVATILLNYCQLWFEYAPFPPISVLAMIENTLAEHDPQLLKHFCETGVTSQTYALQILETAFSEVLTCTEWLILWDHILSNEPSFILMAVVSYNIVQRNAIKKFKTCEQFENFYHLQNPLDKKTFLKKTYLIMNDTSTDIHPRKYLNNFAPLEKGMCYQQFTGYPKTTICLKLANRDVNKSKPTDKNTLKELTVKSQEREIRDGMKSNSNMSYDSTKEARGENVIDRENRKSHKKSEKDHCSTKDELVTSILQPAGIQIDKDKLHSNEATVNKTGRHSRQKTRKKSANYDLENEVERLFETQSRSDKSAK

Keywords

Alternative splicing   Coiled coil   Complete proteome   Polymorphism   Reference proteome   Repeat   WD repeat  

Feature

chain  TBC1 domain family member 31
splice variant  In isoform 3.
sequence variant  In dbSNP:rs16897967.

Uniprot

A0A2A4JY21   A0A2W1BG00   A0A2H1V3M5   A0A212F8K6   A0A0L7KZ27   A0A0N1I815   + More
A0A194QBG5   A0A2P8YYS3   A0A1B6D509   A0A1B6HP85   A0A1B6H3B4   D6WSD6   A0A210QQN7   A0A1Y1KJI1   K1PYW2   A0A2D0S3H4   W5UDW0   W5MSC5   H9GFB9   A0A3P9BHS5   A0A1D5P1C4   A0A3P8QTV5   A0A3B4G3X9   A0A151MXF3   A0A1S3KBI2   U3IU42   R0KWD9   A0A1W5AYP9   A0A2C9JNH0   A0A1S3QML8   A0A2I4C7J3   A0A1W4XMG5   A0A146XTH4   A0A146XSE5   A0A1U8CQG8   A0A147ANU9   A0A1U8CRH9   A0A091G2Z7   A0A146XSD1   A0A146XSC5   A0A146XUX5   A0A146XTK6   A0A146PIL0   A0A146QYU8   A0A3B3R232   A0A146XSB7   A0A146XTL6   A0A3B4UDD6   A0A091PIX3   H2PRM4   A0A146XUX0   A0A091N2N6   Q96DN5-3   A0A3B4UAJ6   A0A3B4D3S4   A0A287B550   A0A2R9A1C6   A0A2I3T967   A0A3B4XFT1   A0A3B3R1C7   Q96DN5-2   A0A1A8HSA6   A0A2R9A5R0   A0A1A8UMZ8   A0A1A8AHP3   H0WVA6   A0A2I3SLS1   A0A2K6A8A9   A0A2Y9LRK2   A0A287BI27   A0A2J8X2T1   H0VPF8   A0A1A8CLM1   A0A3B4XZD2   A0A146XTA8   A0A2I3MQ77   Q96DN5   A0A2R9A1C1   H2QWN5   A0A096N2M9   A0A146QL28   A0A3P8TTL2   A0A146XSB9   A0A0L8GNS6   A0A286XB52   A0A091W7Z0   H9ZFG3   A0A2J8X2S4   A0A2K6BWQ6   A0A2K6A876   W5PME2   G3NQ51   H9G1Y4   A0A096NH23   G3R1F4   A0A2K6BWL8   A0A2K6EVA9  

Pubmed

28756777    22118469    26227816    26354079    29403074    18362917    + More
19820115    28812685    28004739    22992520    23127152    21881562    25186727    15592404    22293439    23749191    15562597    29240929    14702039    16421571    15489334    14654843    23186163    30723633    22722832    16136131    21993624    25319552    20809919    22398555   

EMBL

NWSH01000370    PCG76915.1    KZ150074    PZC74002.1    ODYU01000529    SOQ35445.1    + More
AGBW02009710    OWR50060.1    JTDY01004240    KOB68405.1    KQ460468    KPJ14592.1    KQ459249    KPJ02330.1    PYGN01000282    PSN49391.1    GEDC01016517    JAS20781.1    GECU01031220    JAS76486.1    GECZ01000594    JAS69175.1    KQ971352    EFA06627.1    NEDP02002396    OWF51051.1    GEZM01086075    JAV59795.1    JH823229    EKC29407.1    JT413363    AHH40216.1    AHAT01004811    AAWZ02030599    AADN05000663    AKHW03004704    KYO29241.1    ADON01145488    ADON01145489    KB746368    EOA93429.1    GCES01041344    JAR44979.1    GCES01041343    JAR44980.1    GCES01006551    JAR79772.1    KL447636    KFO75484.1    GCES01041340    JAR44983.1    GCES01041342    JAR44981.1    GCES01041341    JAR44982.1    GCES01041347    JAR44976.1    GCES01142648    JAQ43674.1    GCES01125101    JAQ61221.1    GCES01041352    JAR44971.1    GCES01041337    JAR44986.1    KL390550    KFP91470.1    ABGA01150173    ABGA01150174    ABGA01150175    ABGA01150176    ABGA01150177    ABGA01150178    ABGA01150179    ABGA01150180    ABGA01150181    GCES01041351    JAR44972.1    KK525661    KFP68035.1    AK056434    AC100873    AC104316    BC027237    BC101724    BC111954    BC143525    AEMK02000022    DQIR01203259    HDB58736.1    AJFE02070236    AJFE02070237    AJFE02070238    AJFE02070239    AACZ04067514    NBAG03000213    PNI85582.1    HAED01000588    SBQ86433.1    HAEJ01008519    SBS48976.1    HADY01015516    SBP54001.1    AAQR03010463    AAQR03010464    AAQR03010465    AAQR03010466    NDHI03003373    PNJ76330.1    AAKN02041907    AAKN02041908    HADZ01015709    SBP79650.1    GCES01041349    JAR44974.1    AHZZ02034376    GABC01002812    GABF01001540    GABD01008286    GABE01005233    JAA08526.1    JAA20605.1    JAA24814.1    JAA39506.1    PNI85580.1    GCES01129569    JAQ56753.1    GCES01041350    JAR44973.1    KQ421143    KOF78300.1    KK734924    KFR11604.1    JU477875    AFH34679.1    PNJ76329.1    AMGL01110813    JU337140    AFE80893.1    CABD030060886    CABD030060887    CABD030060888    CABD030060889    CABD030060890    CABD030060891    CABD030060892    CABD030060893    CABD030060894   

Proteomes

UP000218220    UP000007151    UP000037510    UP000053240    UP000053268    UP000245037    + More
UP000007266    UP000242188    UP000005408    UP000221080    UP000018468    UP000001646    UP000265160    UP000000539    UP000265100    UP000261460    UP000050525    UP000085678    UP000016666    UP000192224    UP000076420    UP000087266    UP000192220    UP000192223    UP000189706    UP000053760    UP000261540    UP000261420    UP000001595    UP000005640    UP000261440    UP000008227    UP000240080    UP000002277    UP000261360    UP000005225    UP000233140    UP000248483    UP000005447    UP000028761    UP000265080    UP000053454    UP000053605    UP000233120    UP000002356    UP000007635    UP000001519    UP000233160   

PRIDE

A0A1D5P1C4    Q96DN5   

Pfam

PF00566   RabGAP-TBC        + More
PF00400   WD40

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR000195   Rab-GTPase-TBC_dom       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR035969   Rab-GTPase_TBC_sf       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR011047   Quinoprotein_ADH-like_supfam       

SUPFAM

SSF50978   SSF50978        + More
SSF47923   SSF47923       
SSF50998   SSF50998       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2A4JY21   A0A2W1BG00   A0A2H1V3M5   A0A212F8K6   A0A0L7KZ27   A0A0N1I815   + More
A0A194QBG5   A0A2P8YYS3   A0A1B6D509   A0A1B6HP85   A0A1B6H3B4   D6WSD6   A0A210QQN7   A0A1Y1KJI1   K1PYW2   A0A2D0S3H4   W5UDW0   W5MSC5   H9GFB9   A0A3P9BHS5   A0A1D5P1C4   A0A3P8QTV5   A0A3B4G3X9   A0A151MXF3   A0A1S3KBI2   U3IU42   R0KWD9   A0A1W5AYP9   A0A2C9JNH0   A0A1S3QML8   A0A2I4C7J3   A0A1W4XMG5   A0A146XTH4   A0A146XSE5   A0A1U8CQG8   A0A147ANU9   A0A1U8CRH9   A0A091G2Z7   A0A146XSD1   A0A146XSC5   A0A146XUX5   A0A146XTK6   A0A146PIL0   A0A146QYU8   A0A3B3R232   A0A146XSB7   A0A146XTL6   A0A3B4UDD6   A0A091PIX3   H2PRM4   A0A146XUX0   A0A091N2N6   Q96DN5-3   A0A3B4UAJ6   A0A3B4D3S4   A0A287B550   A0A2R9A1C6   A0A2I3T967   A0A3B4XFT1   A0A3B3R1C7   Q96DN5-2   A0A1A8HSA6   A0A2R9A5R0   A0A1A8UMZ8   A0A1A8AHP3   H0WVA6   A0A2I3SLS1   A0A2K6A8A9   A0A2Y9LRK2   A0A287BI27   A0A2J8X2T1   H0VPF8   A0A1A8CLM1   A0A3B4XZD2   A0A146XTA8   A0A2I3MQ77   Q96DN5   A0A2R9A1C1   H2QWN5   A0A096N2M9   A0A146QL28   A0A3P8TTL2   A0A146XSB9   A0A0L8GNS6   A0A286XB52   A0A091W7Z0   H9ZFG3   A0A2J8X2S4   A0A2K6BWQ6   A0A2K6A876   W5PME2   G3NQ51   H9G1Y4   A0A096NH23   G3R1F4   A0A2K6BWL8   A0A2K6EVA9  

PDB

1VYH     E-value=2.02623e-07,     Score=135

KEGG

101737431    no KO assigned | (RefSeq) TBC1 domain family member 31

GO

GO:0005813   GO:0005515   GO:0016020   GO:0006825   GO:0016531   GO:0000786   GO:0003677   GO:0005634   GO:0006334   GO:0003779   GO:0016021  

Length:

794

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

35.0907800000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.17354

outside

1  -  794

 

 

Pi

29.438832

Theta

50.766633

Tajima's D

0.270794

CLR

1.341598

CSRT

0.446977651117444

Interpretation

Uncertain