SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01105
Pre Gene Modal
BGIBMGA007338
Annotation
PREDICTED:_aquaporin-12_[Bombyx_mori]
Full name
Aquaporin      
Location in the cell
PlasmaMembrane   Reliability : 3.633
 

Sequence

CDS
ATGAAGTTCACTATAGACGTCCTTGGTGTTTTTCTTAAAGTTGTCGTCAAGATCAACAGAGTCACGTTCGCTCCGTTGGTCGTATCGACGCTTTTCATCCTTCTGACGTCACTGCTGGCTCATTGCGCCAGGCGGCTCGTTCATAAGACTATTAACGAGCCATTCGTTCGATTGCTATTCGAAGAACTAATAGCAGCGGCTGAACTATGTGGGTGTTGCTTCGAGTTGATTGTGGTTGCAGATAATTTCGGTGTGGCCACGTACGCGATTTTCTTGTTCGCCCTAACGATATGGTGGTCTGTGAACTGGGGCGACGCTACTGCATGCCCTTACACGCATATCGAGGACGTCATCGAAGGCAAAGGTGATATTCGCAAGGCCCTTCTCAAGACTTGGGCTGAGTTGACTGGAGGTTTGTTGGTCTTTAAGTACGTTCAGTTGTATTGGGCCCTCGAAATCTCCGAGACCCATAAAGACAAAGCCTTTGAGGAGTGCAGGGCTGATCTACAGGTCCCAGTTATCTACGGAGCTATTGTCGAAGGTATAGCGACCTGTCTCTGTCGGTTAGTTTCAAAGTCCTTGGGTGACTTGAACCCTCGCTTCGCCACCGCCATTGATGCCTTCATTGGCACATCGTTAGTTGTTGCCGCGTTTGACTACTCGGGTGGATACTTCAACCCAGTTCTGGCCACCTCCCTCAAGGCTGGATGCGAAGGTCACACTCTCATGGAACACGCTGTGGTGTACTGGATCGGAGCCTGCGCTGGGTCCATTCTCTCTGTCTACATGTACAAGCTACCTGCCATTCAGAGGTACGTCAGAGGAGGCGCAGTAGCTAACGGAGACAGCATTTGGGCGGATAAAGAAGACTAA
Protein
MKFTIDVLGVFLKVVVKINRVTFAPLVVSTLFILLTSLLAHCARRLVHKTINEPFVRLLFEELIAAAELCGCCFELIVVADNFGVATYAIFLFALTIWWSVNWGDATACPYTHIEDVIEGKGDIRKALLKTWAELTGGLLVFKYVQLYWALEISETHKDKAFEECRADLQVPVIYGAIVEGIATCLCRLVSKSLGDLNPRFATAIDAFIGTSLVVAAFDYSGGYFNPVLATSLKAGCEGHTLMEHAVVYWIGACAGSILSVYMYKLPAIQRYVRGGAVANGDSIWADKED

Summary

Similarity
Belongs to the MIP/aquaporin (TC 1.A.8) family.
Feature
chain  Aquaporin
EMBL
KZ150074    PZC73992.1    NWSH01003840    PCG65773.1    AGBW02011610    OWR46440.1    + More
KQ459072    KPJ03841.1    JTDY01000027    KOB79337.1    KK853461    KDR07479.1    NEVH01025128    PNF16065.1    PNF16064.1    PNF16061.1    PYGN01000186    PSN51772.1    PNF16063.1    PNF16062.1    KQ434835    KZC07906.1    GBYB01000021    JAG69788.1    KQ414716    KOC62806.1    KZ288522    PBC25095.1    KQ759891    OAD62111.1    GECZ01008476    JAS61293.1    GECZ01002347    JAS67422.1    GFDF01009107    JAV04977.1    AJWK01005578    GECU01034532    JAS73174.1    GEDC01017890    GEDC01009492    GEDC01007034    JAS19408.1    JAS27806.1    JAS30264.1    CH964154    EDW79678.2    GAKP01007433    GAKP01007432    JAC51520.1    KQ460685    KPJ12876.1    GANO01003318    JAB56553.1    GDHF01007279    JAI45035.1    OUUW01000001    SPP75657.1    CM000071    KRT02090.1    AB985769    BAQ25600.1    JRES01000322    KNC32292.1    UFQS01001195    UFQT01001195    UFQT01001870    SSX09626.1    SSX32052.1    KT963832    APA28762.1    CH954179    EDV56198.1    CM000158    EDW90652.1    CH480816    EDW47687.1    CM002911    KMY93439.1    AE013599    ACZ94413.1    CH940648    EDW60422.1    KRF79412.1    KX246910    CH478233    CH478192    ANX14419.1    EAT33473.1    EAT33615.1    AXCN02001761    JXUM01107364    KQ565135    KXJ71296.1    KA645599    AFP60228.1    GDHF01016056    JAI36258.1    JXUM01032581    JXUM01032582    JXUM01032583    JXUM01032584    KQ560960    KXJ80210.1    KQ982482    KYQ55912.1    AXCM01005795    CH916444    EDV95491.1    AAAB01008823    KU055615    ANC68083.1    APCN01003445    CH933808    EDW10733.1    CH902619    EDV36449.2    KPU76220.1    ADTU01018182    GL448255    EFN85024.1    GBHO01019701    GBRD01007936    GDHC01021104    GDHC01008294    JAG23903.1    JAG57885.1    JAP97524.1    JAQ10335.1    DS231879    EDS42397.1    EAL25342.2    ADMH02001144    ETN63943.1    GFDL01007206    JAV27839.1    KQ976818    KYN08078.1    CP012524    ALC42135.1    JXJN01011083    JN685589    AFP49900.1    KF048101    AHI85752.1    KQ981424    KYN41857.1    KK107144    EZA57569.1    AB036345    AAF58409.2    BAB03660.1    EAA05499.2    ATLV01016045    KE525054    KFB40940.1    GAMD01002884    JAA98706.1    CVRI01000017    CRK90267.1    KRG05443.1    GAPW01003452    JAC10146.1    KQ980155    KYN17464.1    GL888812    EGI57993.1    GL437616    EFN70241.1   
Pfam
PF00230   MIP        + More
PF02902   Peptidase_C48
Interpro
IPR023271   Aquaporin-like        + More
IPR016697   Aquaporin_11/12       
IPR031145   Invert_Aqp-10       
IPR000425   MIP       
IPR003653   Peptidase_C48_C       
IPR038765   Papain-like_cys_pep_sf       
SUPFAM
SSF81338   SSF81338        + More
SSF54001   SSF54001       
Gene 3D

Ontologies

Topology

Length:
290
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
107.40271
Exp number, first 60 AAs:
22.76543
Total prob of N-in:
0.53461
POSSIBLE N-term signal
sequence
inside
1  -  20
TMhelix
21  -  43
outside
44  -  83
TMhelix
84  -  103
inside
104  -  207
TMhelix
208  -  230
outside
231  -  244
TMhelix
245  -  264
inside
265  -  290
 
 

Population Genetic Test Statistics

Pi
190.646325
Theta
185.952256
Tajima's D
0.428706
CLR
0.455243
CSRT
0.495375231238438
Interpretation
Uncertain
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