SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01101
Pre Gene Modal
BGIBMGA007429
Annotation
PREDICTED:_uncharacterized_protein_LOC105841304_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.618 Nuclear   Reliability : 1.697
 

Sequence

CDS
ATGGACATAAACGAGGACATAATCAGAGAGGAAGTGAGCAGCTTCGTGTCCAGTCTACAACGACTGCTGCCCAAGAAAAAGGAAATCATAGTTATACAGCCGCAGAAAGTAAGATTGACAAGGCTAAACGATGTTCATTATGAGGCGAAAAACGTGTTTCCAAAGTGCTTTATCGGTGCTAAGCTGGTTGTTTTGAGAGACGTACTGGACAAAGTCAAATTAATTCAACAATACAATTACGGTAAACCAAAAGATTCATATAGAACTTTCGGACATTTGATACATCAGGAAACGGAGCCTAAGCATGTCGATGATGGCTTAGTGATCGACTCCGCTGGCAGCGCGACAGCGACGTACAAAGAGGTCATCGAGGGGTCATACGAAATGCGTTTGACATCGCGGATCAAAGATTTGGTGTCCTCGGAAACCGAAATAGTGTTTGATAAGGAAAACGAGAAGTCAGTCGGTACGGTCTCGTGTACAATGAGAGACGTTGACCCGACCAGTCTTAAATTCATAACGCAATGGATGTATAAAGTTCATTCCGATGTTTATGTTGGCACAGAAGTTGGGATAAGGCCTTTAGCGTTCCCCGCGGCGCCTGATTACTCATTGAGCGTTCGATATGAAAAGCCTTCTTTCGCATTATCGTCGACGATCAGCAAGATTGGTTTCCAAGCTTGTTTATACAAGAAATTCGCTCCGGATTTAGCGATTGCCTCGATTCTTAGTGAGGACGGCCGCGGTGTTCCCGTGTCTGTCGGGCTGGCGTTGCATAAAAATTTCGGGAGTGACACCGATTTGAAGGTGTTTGTAGATTCGCAGCGCTGCGGGGGATTTACGCTTCAGAAAGATGTCCATTTCCGCGAGAACCGTGAGACCCGGGTCCTCCGGATCATAGCCAGTACCCTCATAGACAAGCAGAGGAGGGTGCGATTCGGTTTTGGTTTTAATCTTGACTTTTGA
Protein
MDINEDIIREEVSSFVSSLQRLLPKKKEIIVIQPQKVRLTRLNDVHYEAKNVFPKCFIGAKLVVLRDVLDKVKLIQQYNYGKPKDSYRTFGHLIHQETEPKHVDDGLVIDSAGSATATYKEVIEGSYEMRLTSRIKDLVSSETEIVFDKENEKSVGTVSCTMRDVDPTSLKFITQWMYKVHSDVYVGTEVGIRPLAFPAAPDYSLSVRYEKPSFALSSTISKIGFQACLYKKFAPDLAIASILSEDGRGVPVSVGLALHKNFGSDTDLKVFVDSQRCGGFTLQKDVHFRENRETRVLRIIASTLIDKQRRVRFGFGFNLDF

Summary

Pfam
PF01459   Porin_3
Interpro
IPR037930   Tom40        + More
IPR027246   Porin_Euk/Tom40       
IPR023614   Porin_dom_sf       
Gene 3D
PDB
5ICR     E-value=0.0244048,     Score=87

Ontologies

Topology

Length:
321
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00257
Exp number, first 60 AAs:
0.00078
Total prob of N-in:
0.03196
outside
1  -  321
 
 

Population Genetic Test Statistics

Pi
176.104725
Theta
143.918445
Tajima's D
0.739124
CLR
0.003402
CSRT
0.583220838958052
Interpretation
Uncertain
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