Gene

KWMTBOMO01099

Annotation

PREDICTED:_putative_nuclease_HARBI1_[Acyrthosiphon_pisum]

Location

Bomo_Chr3(-):2065323-2066707      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.467

CDS

ATGGGGTTCGATTACTATTCGTATCTTGCCAGTGGTAATAGTATGAAGTCCTTGTATTTTGAATATTTGATCGGCACAACAACTCTGAGTGAAATAATTGAACACACATGCAAGAGTTTGTGGATATGTTTGCAACCTACATATATGCCTGGAAAAACAGAAGAGGATTGGATAAATATAGCAAATTTTTATTTTGAAAGAACACATTTTCCTAATTGTCTTGGTTCCATAGATGGAAAACATATACGAATAGAAAGGCCAGAAAATACTGGTTCAGAAGCCTTCAATTACAAAAAGTATTATTCTTTAATATTATTAGCTATAGCTGATGCAGACTATTGCTTTACTGCTATAGATGTTGGGGCATATGGATCGAATAGCGACTCTAGCGTTTTTAAAAACTCAAATTTTGGCAAAAGGTTTTTGAACAACCAAATGCATTTACCAGAATCTGCAACATTACCTGATTATGAGGAAGTCGGACCTTTACCGTTTGTTTTCGTAGGCGATGAAGCTTTTCCACTTATGGAGCACTTAATGAGGCCATATCCAAATAGAAATTTATCCATAAAACAAAGAGTTTATAACTATAGATTATCTTATGCCAGAAGGACTGTCGAATGTGCATTTGGGATCATGGCAAATAAATGGCGTATTTTACATAGACCATTAGATGTGAAATTAGATTTTTGCGACCATATTATTAAAGCTTGTTGCATATTGCACAACTTTGTCAGACAACATGACGGTAAACAGCTTAATGAATCGTTTCAAGTTTCAGAGATGCAGGGTATTGCTTCAATTCGTACGCGTTCTAGCAATAACGTTATAGATGTAAGAAATTTGTTTGCTGATTATTTTACATCTACTGCGGGCGCGTTGAGTTGGCAATATGAAAATATTTAA

Protein

MGFDYYSYLASGNSMKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWINIANFYFERTHFPNCLGSIDGKHIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDVGAYGSNSDSSVFKNSNFGKRFLNNQMHLPESATLPDYEEVGPLPFVFVGDEAFPLMEHLMRPYPNRNLSIKQRVYNYRLSYARRTVECAFGIMANKWRILHRPLDVKLDFCDHIIKACCILHNFVRQHDGKQLNESFQVSEMQGIASIRTRSSNNVIDVRNLFADYFTSTAGALSWQYENI

Uniprot

J9K2X0   A0A2S2P1E6   X1WRY0   A0A2S2NBK1   A0A2S2NMG1   J9JIY0   + More
J9M210   A0A2J7QY78   X1WMG6   X1X279   A0A1B6KID6   J9KI87   J9LWL5   J9K6X4   J9K189   J9JZA8   J9JMZ1   X1WIR3   A0A2S2P0U9   A0A2S2P4H9   J9KD14   A0A2H8TIP0   J9LWQ7   J9K876   X1WSE6   X1WZ84   X1WIS8   A0A2H1VYY0   A0A1E1WUI4   A0A1B6JBR0   X1WXX7   A0A2S2N8V8   J9K6E0   A0A2H8TVR0   X1WJJ7   J9LQ94   S4NNW9   X1WQE4   X1X0T9   A0A0P4VZE0   A0A2J7PF61   A0A2S2PAI8   A0A2G8JDA0   J9KJZ3   J9LS48   J9LKL3   X1XP58   X1WPK0   J9K6X6   A0A0N0PET3   X1WKK4   X1XCN9   A0A2J7QB64   A0A0P4W2I2   X1WUC2   A0A2S2PHY3   J9LAJ7   B2GUF0   A0A2J7PD70   F6RCZ7   A0A0P4W5Q8   A0A147A2E9   A0A1W4X8I4   J9L7N5   J9KFW1   A0A3P9KIC5   A0A2J7R7I8   A0A1E1WI72   A0A2S2PHB1   A0A3P9LX78   A0A2J7PP30   A0A2H1WK04   J9L3Z7   A0A2J7R0P9   A0A1B6HZT2   A0A2G9RW26   A1A649   J9L5G0   A0A0N7ZBJ2   A0A2J7PGM8   A0A3B3T7F3   A0A2J7PMU8   A0A3B3RAL4   A0A146WCR0   X1WQT4   J9K4W8   A0A3B3SIP3   A0A3P9K7T1   A0A1B6JTF8   A0A151IDJ4   A0A2S2ND01   S4NZ68   A0A0N1PFX5   A0A3B3QUT2   A0A2S2NHI2   A0A146PDW1   B3DHE2   J9JL72   A0A1W7R633   A0A2H8TMX6  

Pubmed

23622113    29023486    26354079    20431018    17554307    29240929    + More
23594743   

EMBL

ABLF02014609    GGMR01010668    MBY23287.1    ABLF02018117    GGMR01001869    MBY14488.1    + More
GGMR01005523    MBY18142.1    ABLF02030395    ABLF02040883    ABLF02040911    NEVH01009123    PNF33550.1    ABLF02039417    ABLF02018112    ABLF02054180    ABLF02057104    GEBQ01028774    JAT11203.1    ABLF02036670    ABLF02035814    ABLF02010423    ABLF02014546    ABLF02039608    ABLF02023720    ABLF02023722    ABLF02049240    ABLF02016720    GGMR01010474    MBY23093.1    GGMR01011187    MBY23806.1    ABLF02029176    ABLF02029180    GFXV01002192    MBW13997.1    ABLF02010022    ABLF02013825    ABLF02017443    ABLF02042272    ABLF02053436    ABLF02063701    ABLF02058817    ABLF02010382    ODYU01005305    SOQ46028.1    GDQN01000361    JAT90693.1    GECU01014635    GECU01011035    JAS93071.1    JAS96671.1    ABLF02007334    GGMR01000966    MBY13585.1    ABLF02019581    GFXV01005837    MBW17642.1    ABLF02025001    ABLF02024888    GAIX01012104    JAA80456.1    ABLF02006842    ABLF02017285    ABLF02017286    ABLF02017287    ABLF02023975    ABLF02023979    ABLF02023981    ABLF02043231    ABLF02053316    ABLF02058285    ABLF02023972    GDRN01100681    JAI58521.1    NEVH01026085    PNF14965.1    GGMR01013773    MBY26392.1    MRZV01002436    PIK33713.1    ABLF02017112    ABLF02004403    ABLF02031827    ABLF02065969    ABLF02015081    ABLF02016114    KQ459805    KPJ19882.1    ABLF02019551    ABLF02018875    ABLF02018876    ABLF02018877    NEVH01027118    NEVH01016302    NEVH01007440    NEVH01000280    PNF13625.1    PNF25824.1    PNF35689.1    PNF43673.1    GDRN01090017    JAI60545.1    ABLF02015607    GGMR01016408    MBY29027.1    ABLF02012792    BC166249    AAI66249.1    NEVH01026393    PNF14277.1    AAMC01113955    AAMC01113956    AAMC01113957    AAMC01113958    AAMC01113959    AAMC01113960    AAMC01113961    AAMC01113962    AAMC01113963    AAMC01113964    GDRN01090013    JAI60547.1    GCES01013981    JAR72342.1    ABLF02015257    ABLF02060247    NEVH01006731    PNF36798.1    GDQN01004369    JAT86685.1    GGMR01016212    MBY28831.1    NEVH01023280    PNF18071.1    ODYU01009172    SOQ53415.1    ABLF02013602    ABLF02013605    ABLF02053091    ABLF02066812    NEVH01008226    PNF34407.1    GECU01027536    JAS80170.1    KV931512    PIO32080.1    BC128984    AAI28985.1    ABLF02007889    ABLF02010298    GDRN01082635    JAI61800.1    NEVH01025174    PNF15485.1    NEVH01023960    PNF17663.1    GCES01059429    JAR26894.1    ABLF02011540    ABLF02015364    GECU01005239    JAT02468.1    KQ977955    KYM98502.1    GGMR01002047    MBY14666.1    GAIX01011467    JAA81093.1    KQ460651    KPJ13059.1    GGMR01004042    MBY16661.1    GCES01144268    JAQ42054.1    BX324210    BC162733    BC162738    AAI62733.1    ABLF02008262    ABLF02008264    ABLF02044129    ABLF02048517    ABLF02061956    GEHC01001011    JAV46634.1    GFXV01003708    MBW15513.1   

Proteomes

UP000007819    UP000235965    UP000230750    UP000053240    UP000008143    UP000192223    + More
UP000265180    UP000261540    UP000078542    UP000000437   

Pfam

PF13359   DDE_Tnp_4        + More
PF10545   MADF_DNA_bdg
PF05699   Dimer_Tnp_hAT

Interpro

IPR027806   HARBI1_dom        + More
IPR006578   MADF-dom       
IPR037220   BED_dom       
IPR008906   HATC_C_dom       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF140996   SSF140996        + More
SSF53098   SSF53098       

ProteinModelPortal

J9K2X0   A0A2S2P1E6   X1WRY0   A0A2S2NBK1   A0A2S2NMG1   J9JIY0   + More
J9M210   A0A2J7QY78   X1WMG6   X1X279   A0A1B6KID6   J9KI87   J9LWL5   J9K6X4   J9K189   J9JZA8   J9JMZ1   X1WIR3   A0A2S2P0U9   A0A2S2P4H9   J9KD14   A0A2H8TIP0   J9LWQ7   J9K876   X1WSE6   X1WZ84   X1WIS8   A0A2H1VYY0   A0A1E1WUI4   A0A1B6JBR0   X1WXX7   A0A2S2N8V8   J9K6E0   A0A2H8TVR0   X1WJJ7   J9LQ94   S4NNW9   X1WQE4   X1X0T9   A0A0P4VZE0   A0A2J7PF61   A0A2S2PAI8   A0A2G8JDA0   J9KJZ3   J9LS48   J9LKL3   X1XP58   X1WPK0   J9K6X6   A0A0N0PET3   X1WKK4   X1XCN9   A0A2J7QB64   A0A0P4W2I2   X1WUC2   A0A2S2PHY3   J9LAJ7   B2GUF0   A0A2J7PD70   F6RCZ7   A0A0P4W5Q8   A0A147A2E9   A0A1W4X8I4   J9L7N5   J9KFW1   A0A3P9KIC5   A0A2J7R7I8   A0A1E1WI72   A0A2S2PHB1   A0A3P9LX78   A0A2J7PP30   A0A2H1WK04   J9L3Z7   A0A2J7R0P9   A0A1B6HZT2   A0A2G9RW26   A1A649   J9L5G0   A0A0N7ZBJ2   A0A2J7PGM8   A0A3B3T7F3   A0A2J7PMU8   A0A3B3RAL4   A0A146WCR0   X1WQT4   J9K4W8   A0A3B3SIP3   A0A3P9K7T1   A0A1B6JTF8   A0A151IDJ4   A0A2S2ND01   S4NZ68   A0A0N1PFX5   A0A3B3QUT2   A0A2S2NHI2   A0A146PDW1   B3DHE2   J9JL72   A0A1W7R633   A0A2H8TMX6  

KEGG

NA   

GO

GO:0016021   GO:0046983  

Length:

301

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.25751

Exp number, first 60 AAs:

0.03363

Total prob of N-in:

0.02250

outside

1  -  301

 

 

Pi

194.011625

Theta

197.91071

Tajima's D

-0.829249

CLR

1.743802

CSRT

0.176141192940353

Interpretation

Uncertain