Silkworm Genome Informatics Database

Gene

KWMTBOMO01098

Annotation

hypothetical_protein_L798_04777_[Zootermopsis_nevadensis]

Location

Bomo_Chr3(+):2065088-2067266 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.531

CDS

ATGTCGTCGACCGAGTCGGAGTCTGTTTCAAATGCAGAGTACGAAAGTTTATCCCAGAAAATCATCGTGGAAGTACAGAAAAGACCAGCTTTATACGATACTACTTTGCGTCAATACAGTGATAGAAATGTGAAAAATAAACTTTGGGAGGAAGTTTATCACAACGTAGTTAATAATTGGATGACACTGTCGGAGGCTGAGAAAAAAAAGAAGGGTAGTACAATACAAAAGAAATGGAAGAATATGCGCGACAGTTTTTCTAAAGAATTAGCTATACAGCGTGGTAAATCTGGTCAAGGTGCTATAAAAAAGAAAAAGTACGTTCATTTCGATTCTCTGTTGTTTTTGGTACCATCTTTACAAAAAAGGGAGACTAGCAGTAATATCGAATTTACTTCACAAGATAACCCTGATACGGACTTATCTGAAACCCTTCCACTAACGAATAGTAATCGAACCCCATCCTGTAAGAAGGCTTCCAAAAGCCGAAGTAGCTGTGAAGATTATGAACAAAAATTGTTAAATTTTTTGAATACAAAGGAGAATGCGTGTGAATATGACGAAGATATAAACTTTTCACAAATGATTGTACCAATGTTACGGAAACTTAATGACGATCAGAAACATTTTGCCAAAGTAGAAATTATGAATATTTTGCAAAAAGCCAAATCTTTCTATCCATTCGAAACACCAATTCGTAATCAAAGACCAAGATCACATTTGTCATTCACGCAAACGTCGTCTCCGCAATCATATTATACATATTCCCCATCTCCACCTCCAACCATGCCGATAATGCCACCAGTTTCAACACCAGTACGACAGCTTGTGTCAGGACCTGCAAAACAAACCATCTATTTGCCACTTAATACTCCTGTTCCACCAACATTACAAGCAACCGTGCATTCTCTTCAAGAACTCGAGCAACAAGAACAACAATTACAATATGCACAAAATGAACAAGAAGAGCCTACAGCAGCCAATTATCTGTCGCAATTTCAAGAACAATAA

Protein

MSSTESESVSNAEYESLSQKIIVEVQKRPALYDTTLRQYSDRNVKNKLWEEVYHNVVNNWMTLSEAEKKKKGSTIQKKWKNMRDSFSKELAIQRGKSGQGAIKKKKYVHFDSLLFLVPSLQKRETSSNIEFTSQDNPDTDLSETLPLTNSNRTPSCKKASKSRSSCEDYEQKLLNFLNTKENACEYDEDINFSQMIVPMLRKLNDDQKHFAKVEIMNILQKAKSFYPFETPIRNQRPRSHLSFTQTSSPQSYYTYSPSPPPTMPIMPPVSTPVRQLVSGPAKQTIYLPLNTPVPPTLQATVHSLQELEQQEQQLQYAQNEQEEPTAANYLSQFQEQ

Uniprot

A0A2S2NVF4 K7IX93 A0A0L0BVE8 A0A2J7PBC8 A0A1E1WLC3 X1X940 + More
A0A1A8UXG3 A0A1A8BJ41 A0A1A8J5L9 A0A0P4WL80 A0A1A8RMH5

Pubmed

20075255 26108605

EMBL

GGMR01008582 MBY21201.1 AAZX01000580 AAZX01000618 JRES01001388 KNC23209.1 + More
NEVH01027118 NEVH01016302 NEVH01007440 PNF13628.1 PNF25815.1 PNF35690.1 GDQN01003403 JAT87651.1 ABLF02034356 HADY01009641 HAEJ01011814 SBS52271.1 HADZ01003278 SBP67219.1 HAED01018472 SBR04917.1 GDRN01021545 JAI67801.1 HAEH01018199 SBS07320.1

Proteomes

UP000002358 UP000037069 UP000235965 UP000007819

Pfam

PF10545   MADF_DNA_bdg        + More
PF13499   EF-hand_7
PF02944   BESS

Interpro

IPR039353   TF_Adf1        + More
IPR006578   MADF-dom
IPR004210   BESS_motif
IPR011992   EF-hand-dom_pair
IPR002048   EF_hand_dom
IPR018247   EF_Hand_1_Ca_BS

SUPFAM

SSF47473 SSF47473

CDD

cd00051 EFh

ProteinModelPortal

A0A2S2NVF4 K7IX93 A0A0L0BVE8 A0A2J7PBC8 A0A1E1WLC3 X1X940 + More
A0A1A8UXG3 A0A1A8BJ41 A0A1A8J5L9 A0A0P4WL80 A0A1A8RMH5

KEGG

NA

GO

GO:0005634 GO:0003677 GO:0005509 GO:0003676 GO:0006825 GO:0016531 GO:0000786 GO:0006334 GO:0003779 GO:0016021

PANTHER

PTHR12243

Subcellular location

Nucleus

Length:

336

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01222

outside

1 - 336

Pi

231.462979

Theta

202.135923

Tajima's D

0.342915

CLR

0

CSRT

0.462076896155192

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree