Gene

KWMTBOMO01092

Pre Gene Modal

BGIBMGA007342

Annotation

PREDICTED:_protein_bicaudal_C_homolog_1-A_[Bombyx_mori]

Location

Bomo_Chr3(-):1909865-1912657      View in EpiBrowser

Full name

Protein bicaudal C homolog 1-B      

Location in the cell

Nuclear   Reliability : 2.165

CDS

ATGTTCAAGAAACACGAAGTGGACATCTGCACGTTTGCGTCACTGAACGAGGCCGACCTGTCCGAGCTGGGAGTGACGGCGTTCGGCGCGCGACGGAAGATGCTGCTCCTCATATCCGAGCTTCAAAAACAGTCCAAAACAATGAAGGGCCCCGTCGCTCCCGGCGCCGATCGGAAACTCGTTAGCTCGCCGCCGCAGTACAACACGACCGCCCTCTCTCAGGACAAGTGGTAA

Protein

MFKKHEVDICTFASLNEADLSELGVTAFGARRKMLLLISELQKQSKTMKGPVAPGADRKLVSSPPQYNTTALSQDKW

Description

Putative RNA-binding protein. May be involved in regulating gene expression during embryonic development. Seems to be involved in endoderm formation. Ectopic expression results in endoderm formation in the absence of mesoderm induction (By similarity).

Similarity

Belongs to the BicC family.

Keywords

Developmental protein   Repeat   RNA-binding  

Feature

chain  Protein bicaudal C homolog 1-B

Uniprot

H9JCU5   S4P948   A0A212FKQ6   A0A0N1I581   A0A2A4J394   A0A2H1WXQ1   + More
A0A194R4Y5   A0A1B6J5R8   A0A1B6KZ36   A0A2P8XRN2   E9IMR1   A0A2R7X7G3   A0A2W1BAV0   A0A195B6E3   A0A151XDL7   A0A195FNS9   A0A158NH18   A0A151J205   E2AJE0   A0A232F179   K7IRE5   A0A0J7KWV3   A0A088AW86   A0A1Y1LKG0   A0A310SKW2   A0A0N0BK45   F4WSU0   A0A026VZM3   A0A0L7R4Y6   A0A1B6DKN9   E2B2B9   J9K7C8   A0A2J7QGK9   A0A2H8TX19   D6WV91   A0A023F1U7   A0A2S2Q3V5   A0A0P4VNG6   A0A3Q0J1S2   C3XQB6   A0A0P5K899   Q28DI2   A0A0N8AY52   A0A0P5AQ42   A0A0P5RRC1   E9HKF0   A0A0P6GTX1   A0A0P5D1P4   A0A0P6CDR9   A0A0P5ACE1   A0A0P5RDT7   Q5U4T7   A0A0P6H0P0   A0A0P5Q9Q0   A0A0P5PUD6   E0VH60   A0A1L8FIS1   A0A2I0TJS4   A0A226P4I6   A0A226MHB1   D2HXJ4  

Pubmed

19121390    23622113    22118469    26354079    29403074    21282665    + More
28756777    21347285    20798317    28648823    20075255    28004739    21719571    24508170    30249741    18362917    19820115    25474469    27129103    18563158    21292972    20566863    27762356    24621616    20010809   

EMBL

BABH01027736    BABH01027737    BABH01027738    GAIX01009215    JAA83345.1    AGBW02008002    + More
OWR54324.1    KQ459072    KPJ03849.1    NWSH01003336    PCG66525.1    ODYU01011858    SOQ57841.1    KQ460685    KPJ12868.1    GECU01013202    JAS94504.1    GEBQ01023306    JAT16671.1    PYGN01001467    PSN34659.1    GL764255    EFZ18158.1    KK858351    PTY27722.1    KZ150177    PZC72559.1    KQ976574    KYM80088.1    KQ982294    KYQ58348.1    KQ981387    KYN41967.1    ADTU01015436    ADTU01015437    ADTU01015438    ADTU01015439    KQ980447    KYN16015.1    GL439972    EFN66461.1    NNAY01001342    OXU24300.1    LBMM01002473    KMQ94786.1    GEZM01053183    JAV74139.1    KQ761783    OAD57009.1    KQ435709    KOX80042.1    GL888327    EGI62747.1    KK107566    QOIP01000006    EZA48916.1    RLU22042.1    KQ414654    KOC65945.1    GEDC01011042    JAS26256.1    GL445130    EFN90156.1    ABLF02031103    NEVH01014361    PNF27721.1    GFXV01006992    MBW18797.1    KQ971363    EFA07761.1    GBBI01003726    JAC14986.1    GGMS01003203    MBY72406.1    GDKW01003982    JAI52613.1    GG666452    EEN69729.1    GDIQ01194206    JAK57519.1    CR855500    CAJ81753.1    GDIQ01231443    JAK20282.1    GDIP01199333    JAJ24069.1    GDIQ01097893    JAL53833.1    GL732668    EFX67775.1    GDIQ01029715    JAN65022.1    GDIP01162379    JAJ61023.1    GDIP01016914    JAM86801.1    GDIP01201880    JAJ21522.1    GDIQ01103869    JAL47857.1    BC084957    GDIQ01026401    JAN68336.1    GDIQ01123324    JAL28402.1    GDIQ01133722    JAL18004.1    DS235161    EEB12716.1    CM004478    OCT71486.1    KZ509449    PKU34070.1    AWGT02000174    OXB74618.1    MCFN01000876    OXB54682.1    GL193623    EFB29512.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000218220    UP000053240    UP000245037    + More
UP000078540    UP000075809    UP000078541    UP000005205    UP000078492    UP000000311    UP000215335    UP000002358    UP000036403    UP000005203    UP000053105    UP000007755    UP000053097    UP000279307    UP000053825    UP000008237    UP000007819    UP000235965    UP000007266    UP000079169    UP000001554    UP000000305    UP000009046    UP000186698    UP000198419    UP000198323   

PRIDE

H9JCU5    Q5U4T7   

Pfam

PF00013   KH_1        + More
PF00536   SAM_1

Interpro

IPR004087   KH_dom        + More
IPR001660   SAM       
IPR004088   KH_dom_type_1       
IPR013761   SAM/pointed_sf       
IPR036612   KH_dom_type_1_sf       
IPR037974   BICC1_SAM_dom       
IPR009069   Cys_alpha_HP_mot_SF       

SUPFAM

SSF54791   SSF54791        + More
SSF47769   SSF47769       
SSF47072   SSF47072       

Gene 3D

1.10.150.50     3.30.1370.10    

CDD

cd09520  SAM_BICC1

ProteinModelPortal

H9JCU5   S4P948   A0A212FKQ6   A0A0N1I581   A0A2A4J394   A0A2H1WXQ1   + More
A0A194R4Y5   A0A1B6J5R8   A0A1B6KZ36   A0A2P8XRN2   E9IMR1   A0A2R7X7G3   A0A2W1BAV0   A0A195B6E3   A0A151XDL7   A0A195FNS9   A0A158NH18   A0A151J205   E2AJE0   A0A232F179   K7IRE5   A0A0J7KWV3   A0A088AW86   A0A1Y1LKG0   A0A310SKW2   A0A0N0BK45   F4WSU0   A0A026VZM3   A0A0L7R4Y6   A0A1B6DKN9   E2B2B9   J9K7C8   A0A2J7QGK9   A0A2H8TX19   D6WV91   A0A023F1U7   A0A2S2Q3V5   A0A0P4VNG6   A0A3Q0J1S2   C3XQB6   A0A0P5K899   Q28DI2   A0A0N8AY52   A0A0P5AQ42   A0A0P5RRC1   E9HKF0   A0A0P6GTX1   A0A0P5D1P4   A0A0P6CDR9   A0A0P5ACE1   A0A0P5RDT7   Q5U4T7   A0A0P6H0P0   A0A0P5Q9Q0   A0A0P5PUD6   E0VH60   A0A1L8FIS1   A0A2I0TJS4   A0A226P4I6   A0A226MHB1   D2HXJ4  

PDB

4RQN     E-value=1.2725e-07,     Score=127

KEGG

101736475    K18756 protein bicaudal C | (RefSeq) protein bicaudal C homolog 1-A

GO

GO:0003723   GO:0007275   GO:0005515   GO:0005758   GO:0006825   GO:0016531   GO:0000786   GO:0003677   GO:0005634   GO:0006334   GO:0003779   GO:0016021  

Length:

77

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01312

Exp number, first 60 AAs:

0.01312

Total prob of N-in:

0.44538

outside

1  -  77

 

 

Pi

212.285012

Theta

160.668517

Tajima's D

1.020071

CLR

0.381776

CSRT

0.658917054147293

Interpretation

Uncertain