SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01087  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007345
Annotation
PREDICTED:_fatty-acid_amide_hydrolase_2-like_isoform_X1_[Papilio_xuthus]
Location in the cell
Mitochondrial   Reliability : 1.898
 

Sequence

CDS
ATGTGCACAACAAACCACGGCGACGGAAGAATTTCGCATTCTGTGCCTGGCAGCAAAACTTGTAACATTATTCGAGGAATAGCATTTAACATGATCAAACACGCATTCCTGGTCTTCAGAACATATCTGGACTTATTCATTGATTACATATTCTCCCTTTACTGGGAAGCGAAGAGGACACCTTTGCCAAATTTGGAAAAAAAGCATATTATACTTAAGGACGATGCTGTGACCATTGCCGCAAAGATCAGAAATAGACAGTTAAAGTCTGAAGATTTGGTTCAAATGTGCATTGAAAGAATAAAAATTGTCAATCCAATACTGAACGCCGTCACAGATGAGCGTTTTGAAGAGGCTTTAGAAGAAGCGCGCGAAATCGACCGGATGCTTGATGAGGGACTCTCAGAAGAATATCTCAAGAAGAAACCATTCCTTGGTGTTCCGTTTACGGCGAAAGAGAGTCACGCGGTGAAGGGCCTGCTCCACACGTTGGGCATCAAGGCGCGGGCGCACGTCCGCGCGCACGAGGACGCGGAGTGCGTGCGCCTCATGCGCGCGGCCGGCGCCCTCCCGCTCGCCGTCACCAACGTACCAGAGATCAACAAATGGTGTGAAACTCGCAACATGGTGTTTGGTCAGACCAACAACCCGTATCACACCGGGCGCACCACGGGCGGGTCCAGCGGTGGGGAGGCCGCGCTGATGGCCGCCATGGCGACACCCATATCGTTATGTTCGGACATCGGCGGGTCCACGCGGATGCCGGCGTTCTACTGCGGCTTGTTCGGCATCAACCCCACCGCCGGATATACCAGTCTTAAAGGCTCGGCGCTGCGCTCCGGTAAAGATGACACCATGGCGTCGATAGGGTTCGTTAGCAGACACACCTGCGACCTCGCCGCGCTCACCAAAGTCATCCTGGCCGACAAGGCTGCTGAGCTGGACTTGGACAGGCCCGTGGACCTCAAGACGATCAAGTATTATTACCTGGACACGGCCCAGGACCTGCGTGTCAGTCCCATCCAGCCGGAGCTCCGGGAGGCCATGGACAAAGTCATAAGTCAACTAAGCGAGGAGGCGTCGAGCGCCCGGCGCTACCAGCACGCCGGCCTCGACCACATGTACGCGCTGTGGCGGCACGCCATGACCAGGGAGGCCGACGTGTTCGGGCGCCTCCTCACCAACAACCAAGGAGAGGCCAGCGCGGTCCTCGAGCTGCTCAAAAAGCTGACAGGACAGAGCGACTACACGTGGGCGGCCGTACTGAAGCTGCTGGACGACCAGGTGCTGCCCCGGGTCAACGCCGACTGGGCTGACCGCCTCACCGCAGCACTCAGGGAGGATCTCTTGAAGACTCTCGGTACGGACGGTGTGCTGCTGTCCGCGAGCGCCCCGCAGCCGGCGCCCTACCACGCCGCGCCGCTGCTGCGACCCTTCAACTTCGCCTACTGGGGGATCTTCAATGTACTCAGGTTCCCCGCTGTGCAGGTACCGTTAGGGCTGAACAGTGAGGGCATTCCCCTCGGCATCCAGGTGGTGGCGGCGCCCGCGCAGGAGGCGCTCTGCCTCGCCGTGGCGGAGCACCTGGCCAGGACCTTCGGGGGCTACGTGCCTCCGTGCAAGATTATAGATACATAG
Protein
MCTTNHGDGRISHSVPGSKTCNIIRGIAFNMIKHAFLVFRTYLDLFIDYIFSLYWEAKRTPLPNLEKKHIILKDDAVTIAAKIRNRQLKSEDLVQMCIERIKIVNPILNAVTDERFEEALEEAREIDRMLDEGLSEEYLKKKPFLGVPFTAKESHAVKGLLHTLGIKARAHVRAHEDAECVRLMRAAGALPLAVTNVPEINKWCETRNMVFGQTNNPYHTGRTTGGSSGGEAALMAAMATPISLCSDIGGSTRMPAFYCGLFGINPTAGYTSLKGSALRSGKDDTMASIGFVSRHTCDLAALTKVILADKAAELDLDRPVDLKTIKYYYLDTAQDLRVSPIQPELREAMDKVISQLSEEASSARRYQHAGLDHMYALWRHAMTREADVFGRLLTNNQGEASAVLELLKKLTGQSDYTWAAVLKLLDDQVLPRVNADWADRLTAALREDLLKTLGTDGVLLSASAPQPAPYHAAPLLRPFNFAYWGIFNVLRFPAVQVPLGLNSEGIPLGIQVVAAPAQEALCLAVAEHLARTFGGYVPPCKIIDT

Summary

Similarity
Belongs to the ligand-gated ion channel (TC 1.A.9) family.
EMBL
BABH01027727    AGBW02011586    OWR46450.1    KQ459072    KPJ03855.1    KQ460685    + More
KPJ12863.1    GAIX01000394    JAA92166.1    ODYU01007041    SOQ49440.1    KZ150177    PZC72556.1    KPJ12864.1    AK402382    BAM19004.1    AK402871    BAM19437.1    KPJ03854.1    GAIX01005115    JAA87445.1    AGBW02008003    OWR54319.1    GFTR01007039    JAW09387.1    BABH01027728    GBBI01000343    JAC18369.1    GECL01003517    JAP02607.1    GDKW01001260    JAI55335.1    GBYB01001835    JAG71602.1    KK852428    KDR24070.1    ACPB03006226    JXUM01063734    JXUM01063735    KQ562265    KXJ76273.1    JXUM01096859    JXUM01096860    KQ564297    KXJ72471.1    GEBQ01013098    JAT26879.1    APCN01005736    AAAB01008980    EAA14577.4    GL888280    EGI63361.1    AXCN02000647    NEVH01017557    PNF23845.1    KK855826    PTY24019.1    AXCM01003770    CH477209    EAT47732.1    GL449769    EFN82043.1    DS235088    EEB11672.1    ATLV01014759    KE524984    KFB39538.1    KQ434924    KZC11579.1    KQ976628    KYM78900.1    KZ288379    PBC26567.1    KQ981261    KYN44137.1    GFDL01000502    JAV34543.1    KQ983089    KYQ47618.1    GGFJ01004312    MBW53453.1    KQ980882    KYN11943.1    GGFJ01004311    MBW53452.1    KK107238    QOIP01000007    EZA54716.1    RLU20207.1    CVRI01000001    CRK86482.1    GGFJ01004313    MBW53454.1    GGFK01007932    MBW41253.1    GGFK01007766    MBW41087.1    AK417298    BAN20513.1    GFXV01005193    MBW16998.1    ADMH02001646    ETN61596.1    GEDC01029691    JAS07607.1    GEDC01007137    JAS30161.1    AAZX01005919    GGMS01010379    MBY79582.1    CM000364    EDX14437.1    JRES01001197    KNC24667.1    KQ414663    KOC65383.1    KQ971361    EFA07993.1    GFDF01004968    JAV09116.1    CH480828    EDW44999.1    ABLF02034972    ABLF02034978    UFQS01000574    UFQT01000574    SSX05049.1    SSX25411.1    GBHO01023860    JAG19744.1    GFDF01005160    JAV08924.1    GBRD01003212    JAG62609.1    GEZM01086074    JAV59796.1    AE014297    AY058674    AAF56474.1    AAL13903.1    CM000160    EDW98740.2    APGK01019841    APGK01053910    BT128646    KB741239    KB740134    KB632275    AEE63603.1    ENN72115.1    ENN81277.1    ERL91089.1    NNAY01000905    OXU25992.1    CH964272    EDW84977.1    CH954182    EDV53657.1    CH916369    EDV92834.1    OUUW01000007    SPP83551.1    JXJN01013383    CP012526    ALC47998.1    KA647687    AFP62316.1    CH479182    EDW34240.1   
Pfam
PF01425   Amidase        + More
PF02931   Neur_chan_LBD
PF02932   Neur_chan_memb
Interpro
IPR023631   Amidase_dom        + More
IPR036928   AS_sf       
IPR020556   Amidase_CS       
IPR018000   Neurotransmitter_ion_chnl_CS       
IPR036719   Neuro-gated_channel_TM_sf       
IPR036734   Neur_chan_lig-bd_sf       
IPR006029   Neurotrans-gated_channel_TM       
IPR006202   Neur_chan_lig-bd       
IPR006028   GABAA/Glycine_rcpt       
SUPFAM
SSF75304   SSF75304        + More
SSF90112   SSF90112       
SSF63712   SSF63712       
Gene 3D
PDB
3A2P     E-value=3.34432e-23,     Score=269

Ontologies

Topology

Length:
545
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
12.51387
Exp number, first 60 AAs:
12.46052
Total prob of N-in:
0.58615
POSSIBLE N-term signal
sequence
outside
1  -  545
 
 

Population Genetic Test Statistics

Pi
250.087867
Theta
171.957922
Tajima's D
1.578482
CLR
0.18447
CSRT
0.806559672016399
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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