SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01082
Pre Gene Modal
BGIBMGA007347
Annotation
olfactory_receptor_39_[Bombyx_mori]
Full name
Odorant receptor      
Location in the cell
PlasmaMembrane   Reliability : 4.382
 

Sequence

CDS
ATGCAGTCCGTTAAGAAGCGCGGCGTAATTTTCTGGCTAGTGATAATTAGTAATGGAGTTGTCTACCTCGTGAAGCCAATCGTGACGCCCGGCAGGCATTTCATGGAAGACCAATTCATCATTTTAGGTCTCGAACCTAAGTACGAAACACCGAATTACGAGATAGGATTTTTTATGATGGCGGTCGGAGTTTGTGTGACTTGCTACTTGCCAGCCAACATCACGGCTTACCTGATAACCGTAGCCGGATATTCAGAAGCACAGTTTTTGGCACTTGGACACGAACTCGCAAACCTGTGGCCGGACGCTCAACTACACTGCCGCGCAATGAACTTGAGCCAATCAGTAAATGAGCAAGCTAACGAATACGTGAAAATGCGATTGAGAGAATTAGTAAAAATACATTCCACCAATGTTAACCTTTTGAGGGATATAGAGGGAGCTTTTAGAGGAGCTATTGCTGTTGAATTTTTACTATTGATTGTGGGCCTTATAGCTGAGTTGCTGGGGGGCTTGGAGAATACATACATGCAGGTGCCTTTTGCGCTGATTCAGGTCTCGGTGGACTGCCTCACGGGACAGCGGGTGATGGATGCGAACTTGGCTCTAGAACGCGCAGTTTACGATTGTCGGTGGGAAGAGTTCGATGCTAGTAACCGTCGGGTCGTGTTGCTACTGTTGCAGAACGCACAGAAAGTAGCCACGCTGTCGGCGGGCGGCATCGCCACCCTCAACTTCAGCTGTCTCATGGCTGTGATCAAATCTATCTACTCTGCCTACACCACGCTTAGAACTACCATGAAATAA
Protein
MQSVKKRGVIFWLVIISNGVVYLVKPIVTPGRHFMEDQFIILGLEPKYETPNYEIGFFMMAVGVCVTCYLPANITAYLITVAGYSEAQFLALGHELANLWPDAQLHCRAMNLSQSVNEQANEYVKMRLRELVKIHSTNVNLLRDIEGAFRGAIAVEFLLLIVGLIAELLGGLENTYMQVPFALIQVSVDCLTGQRVMDANLALERAVYDCRWEEFDASNRRVVLLLLQNAQKVATLSAGGIATLNFSCLMAVIKSIYSAYTTLRTTMK

Summary

Similarity
Belongs to the insect chemoreceptor superfamily. Heteromeric odorant receptor channel (TC 1.A.69) family.
EMBL
AB186516    AB472118    BAG12815.1    BAH66336.1    BABH01027717    BABH01027718    + More
BABH01027719    BABH01027720    BABH01027721    JTDY01001167    KOB74670.1    LC002703    BAR43451.1    KX084505    ARO76460.1    LC002710    BAR43458.1    AB186510    AB472114    BAG12809.1    BAH66332.1    BK005941    DAA05991.1    ODYU01007660    SOQ50636.1    MH193989    AZB49435.1    BABH01027593    AB472117    BAH66335.1    JQ794808    AFL70813.1    MG816599    AXF48784.1    BK005944    DAA05994.1    KZ150062    PZC74193.1    KF487708    AII01106.1    KF487678    AII01076.1    GDKB01000050    JAP38446.1    GENK01000073    JAV45840.1    NWSH01003458    PCG66260.1    KY707234    AVF19676.1    PZC74192.1    KR935736    ALM26228.1    KY399281    AQQ73512.1    KY707208    AVF19650.1    GENK01000057    JAV45856.1    KY399282    AQQ73513.1    KY225496    ARO70508.1    KT588132    AOE48042.1    GCVX01000195    JAI18035.1    GEDO01000034    JAP88592.1    KY399283    AQQ73514.1    MH193983    AZB49429.1    SOQ50634.1    JTDY01012011    KOB52347.1    KX084500    ARO76455.1    GEDO01000058    JAP88568.1    PCG66259.1    KF768704    AIG51898.1    KM678313    AJE25886.1    PZC74191.1    KM892387    AJF23802.1    KY707206    AVF19648.1    KX084467    ARO76422.1    KM597213    AIT69890.1    KM655550    AIT72000.1    GEDO01000057    JAP88569.1    GCVX01000196    JAI18034.1    KJ542684    AJD81568.1    NWSH01002174    PCG68968.1    KM655551    AIT72001.1    KM892388    AJF23803.1    KM678314    AJE25887.1    KM597214    AIT69891.1    SOQ50633.1    KF487680    AII01078.1    KX585338    ARO70231.1    KF487666    AII01064.1    PCG68969.1    JN836705    AFC91745.2    SOQ50635.1    MG816609    AXF48794.1    BK005943    DAA05993.1    AB472116    BAH66334.1    KR935735    ALM26227.1    KT588137    AOE48047.1    PZC74198.1    KY399285    AQQ73516.1    KY707207    AVF19649.1    PCG68967.1    KX655993    AOG12942.1    JN836706    AFC91746.1    KY283740    AST36399.1    DQ991156    ABK27850.1    MG816612    AXF48797.1    KX585345    ARO70238.1    KY283662    AST36321.1    KY399284    AQQ73515.1    KY283620    AST36279.1    KU598896    ANZ03142.1    KY283663    AST36322.1    AGBW02008001    OWR54326.1    LC002711    BAR43459.1    AGBW02012963    OWR44153.1    MG546606    AYD42229.1    AGBW02009241    OWR51276.1    OWR51272.1    BABH01028070    BABH01028071    BABH01028072    BABH01028073    JQ794807    AFL70812.1    OWR51275.1    KP975144    ALT31663.1    MG816598    AXF48783.1   
Pfam
PF02949   7tm_6
Interpro
IPR004117   7tm6_olfct_rcpt       
PDB
6C70     E-value=0.00610157,     Score=91

Ontologies

Topology

Subcellular location
Cell membrane  
Length:
268
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
88.4253
Exp number, first 60 AAs:
26.26359
Total prob of N-in:
0.99829
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  56
TMhelix
57  -  79
inside
80  -  146
TMhelix
147  -  169
outside
170  -  235
TMhelix
236  -  258
inside
259  -  268
 
 

Population Genetic Test Statistics

Pi
206.699383
Theta
147.712681
Tajima's D
-0.585312
CLR
0.244949
CSRT
0.219789010549473
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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