Gene

KWMTBOMO01079

Pre Gene Modal

BGIBMGA007348

Annotation

PREDICTED:_F-box/LRR-repeat_protein_15_[Bombyx_mori]

Location

Bomo_Chr3(-):1697627-1698745      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.639

CDS

ATGAATAAAGGCTTTTCACCGCACACATTTAGGGTGTTTGCAACGACATGCAGAAGACTAACCGTGCTGAATCTGAGCCGATGCGACACTATTACTGATGCAGACCTCATCCCCATGCTACTGCAAAATTCCAACATTACGAATCTAAACCTCAGTCAGTGCAACAGCCTCTCTGCCAAGTCTTTACAACCTGTGATATTGTACTGTAACAAACTTCAAATTCTGAAGCTATCGAAATGCTCGTGGCTCACGACCGGTGCTGTGGAGGCTCTCGCGTTACATCAGTCGAAACTTGAGGATGTTGACCTCTCATACTGCAGCTCTATAACGGAGAGCTGTATACTGATATTCATAAAAAAGTTCAGACATTTAAAAACATTCAGCTTAGAAGGAAATAAACAAGTAACAGATAAGATTTTGTACGCTTTATCCAAGTACAGTACTGAATTGAAACTTCTTAATCTAGGTGGCTGTGGTGATATTACCGATAAAGGTGTCAAGGCTTTGGCTGTGCACAATAAGAATTTGGAAGGACTGATGGTGAGAAGTTGCACGAAGGTGACTGAAAACAGTCTAAAGATGCTAAGGGGCAGAGCTCACATTGATAGGAGATCAGTTGATCCCGGACCAATACCTATTTATTTGCCGATATAG

Protein

MNKGFSPHTFRVFATTCRRLTVLNLSRCDTITDADLIPMLLQNSNITNLNLSQCNSLSAKSLQPVILYCNKLQILKLSKCSWLTTGAVEALALHQSKLEDVDLSYCSSITESCILIFIKKFRHLKTFSLEGNKQVTDKILYALSKYSTELKLLNLGGCGDITDKGVKALAVHNKNLEGLMVRSCTKVTENSLKMLRGRAHIDRRSVDPGPIPIYLPI

Uniprot

H9JCV1   A0A2H1X006   A0A194RAG4   A0A194QAK1   A0A2A4IVK5   A0A2W1BGE7   + More
A0A212EYF8   A0A0L7LLJ9   A0A182NEQ5   A0A182SDM7   A0A182M1Z7   A0A182JUJ1   A0A182VUM2   A0A1S4H0R8   A0A1C7CZQ5   A0A182U660   A0A182HGB2   A0A182X0M6   A0A182V685   Q7QGF4   A0A182YNF2   A0A084VM38   W5J8Z0   A0A2M4AE97   A0A2M4BVK2   A0A182F657   A0A2M4BV22   A0A2M4BUP7   A0A182P9J1   A0A0K8W7A8   A0A034VJ60   A0A1I8MX08   A0A0L0C6K5   A0A182QT12   A0A1I8MX05   B4LS60   A0A1I8Q931   A0A1L8EE59   A0A1L8E7U3   A0A034VIH4   A0A0K8VTX0   Q16N18   A0A182RAU0   A0A1W4UW18   A0A0Q5WII4   A0A0Q9WAU1   A0A1W4UIS3   B4I189   A0A0J9QVV3   B4NWA4   A0A023EMP1   B4Q348   B4KKL2   B3N4C1   A0A0R1DKA9   A0A182H856   A0A023EMN9   Q0E8T8   W8BDG2   A0A0P8Y5J0   A0A0Q9XED9   B3MVK5   A0A0R3NXU7   A0A336LS60   B4JPV5   A0A1A9YJ25   A5H0I4   B0X9W8   Q9VMY0   D3TPW1   B5RIQ5   A0A3B0K2D4   A0A0M4E2X2   Q29MA7   A0A1Q3F8T1   Q8T0E8   B4G9I5   A0A182JBB3   A0A1J1I0V7   B4N0I4   A0A1A9UPK7   A0A1B0AJQ4   A0A1A9WKN1   A0A1B0AT68   A0A2P8ZEJ4   A0A0K8VNC5   A0A2J7Q9A5   A0A0R3NSJ9   W8C8U0   A0A1B0FAW6   A0A067RW06   A0A1B6DTC5   A0A1B6D936   T1JTM9   A0A226F4J5   R7VDT7   A0A3B3ZZA9   A0A1B6GMC0   A0A3B3ZZB5  

Pubmed

19121390    26354079    28756777    22118469    26227816    12364791    + More
20966253    25244985    24438588    20920257    23761445    25348373    25315136    26108605    17994087    17510324    22936249    17550304    24945155    26483478    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24495485    15632085    20353571    29403074    24845553    23254933    25463417   

EMBL

BABH01027711    ODYU01012357    SOQ58631.1    KQ460685    KPJ12851.1    KQ459232    + More
KPJ02502.1    NWSH01006471    PCG63408.1    KZ150062    PZC74199.1    AGBW02011516    OWR46533.1    JTDY01000729    KOB76081.1    AXCM01014476    AAAB01008835    APCN01004212    EAA05795.4    ATLV01014577    KE524975    KFB39032.1    ADMH02001847    ETN60907.1    GGFK01005790    MBW39111.1    GGFJ01007637    MBW56778.1    GGFJ01007785    MBW56926.1    GGFJ01007638    MBW56779.1    GDHF01005352    JAI46962.1    GAKP01017369    JAC41583.1    JRES01000827    KNC28048.1    AXCN02000844    CH940649    EDW64746.2    GFDG01001874    JAV16925.1    GFDG01004075    JAV14724.1    GAKP01017371    GAKP01017367    JAC41585.1    GDHF01009988    JAI42326.1    CH477842    EAT35735.1    CH954177    KQS70137.1    KRF81843.1    CH480820    EDW54296.1    CM002910    KMY88177.1    CM000157    EDW88421.1    GAPW01002981    JAC10617.1    CM000361    EDX03764.1    KMY88176.1    CH933807    EDW12676.2    EDV57791.1    KRJ97771.1    JXUM01028752    KQ560831    KXJ80693.1    GAPW01002980    JAC10618.1    AE014134    ABI31287.1    GAMC01007215    JAB99340.1    CH902624    KPU74383.1    KRG03380.1    EDV33270.1    CH379060    KRT04191.1    UFQS01000144    UFQT01000144    SSX00472.1    SSX20852.1    CH916372    EDV98935.1    DQ508734    ABF57911.1    DS232553    EDS43394.1    AAF52178.2    EZ423463    ADD19739.1    BT044179    ACH92244.1    OUUW01000004    SPP79161.1    CP012523    ALC40054.1    EAL33787.1    GFDL01011071    JAV23974.1    AY069367    AAL39512.1    CH479180    EDW29015.1    CVRI01000038    CRK93835.1    CH963920    EDW77597.1    JXJN01003196    PYGN01000079    PSN54911.1    GDHF01011966    JAI40348.1    NEVH01016943    PNF25152.1    KRT04190.1    GAMC01007216    JAB99339.1    CCAG010017358    KK852428    KDR24054.1    GEDC01028220    GEDC01008375    GEDC01004127    GEDC01002399    JAS09078.1    JAS28923.1    JAS33171.1    JAS34899.1    GEDC01026276    GEDC01021011    GEDC01015105    JAS11022.1    JAS16287.1    JAS22193.1    CAEY01000481    LNIX01000001    OXA64101.1    AMQN01004174    KB292771    ELU17013.1    GECZ01006173    JAS63596.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000007151    UP000037510    + More
UP000075884    UP000075901    UP000075883    UP000075881    UP000075920    UP000075882    UP000075902    UP000075840    UP000076407    UP000075903    UP000007062    UP000076408    UP000030765    UP000000673    UP000069272    UP000075885    UP000095301    UP000037069    UP000075886    UP000008792    UP000095300    UP000008820    UP000075900    UP000192221    UP000008711    UP000001292    UP000002282    UP000000304    UP000009192    UP000069940    UP000249989    UP000000803    UP000007801    UP000001819    UP000001070    UP000092443    UP000002320    UP000268350    UP000092553    UP000008744    UP000075880    UP000183832    UP000007798    UP000078200    UP000092445    UP000091820    UP000092460    UP000245037    UP000235965    UP000092444    UP000027135    UP000015104    UP000198287    UP000014760    UP000261520   

PRIDE

H9JCV1    Q0E8T8    Q9VMY0    Q8T0E8   

Pfam

PF13516   LRR_6        + More
PF00646   F-box
PF00096   zf-C2H2
PF01603   B56
PF00560   LRR_1

Interpro

IPR001611   Leu-rich_rpt        + More
IPR006553   Leu-rich_rpt_Cys-con_subtyp       
IPR032675   LRR_dom_sf       
IPR001810   F-box_dom       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR002554   PP2A_B56       
IPR016024   ARM-type_fold       
IPR012934   Znf_AD       
IPR011989   ARM-like       

SUPFAM

SSF57667   SSF57667        + More
SSF48371   SSF48371       

Gene 3D

3.80.10.10     1.25.10.10    

ProteinModelPortal

H9JCV1   A0A2H1X006   A0A194RAG4   A0A194QAK1   A0A2A4IVK5   A0A2W1BGE7   + More
A0A212EYF8   A0A0L7LLJ9   A0A182NEQ5   A0A182SDM7   A0A182M1Z7   A0A182JUJ1   A0A182VUM2   A0A1S4H0R8   A0A1C7CZQ5   A0A182U660   A0A182HGB2   A0A182X0M6   A0A182V685   Q7QGF4   A0A182YNF2   A0A084VM38   W5J8Z0   A0A2M4AE97   A0A2M4BVK2   A0A182F657   A0A2M4BV22   A0A2M4BUP7   A0A182P9J1   A0A0K8W7A8   A0A034VJ60   A0A1I8MX08   A0A0L0C6K5   A0A182QT12   A0A1I8MX05   B4LS60   A0A1I8Q931   A0A1L8EE59   A0A1L8E7U3   A0A034VIH4   A0A0K8VTX0   Q16N18   A0A182RAU0   A0A1W4UW18   A0A0Q5WII4   A0A0Q9WAU1   A0A1W4UIS3   B4I189   A0A0J9QVV3   B4NWA4   A0A023EMP1   B4Q348   B4KKL2   B3N4C1   A0A0R1DKA9   A0A182H856   A0A023EMN9   Q0E8T8   W8BDG2   A0A0P8Y5J0   A0A0Q9XED9   B3MVK5   A0A0R3NXU7   A0A336LS60   B4JPV5   A0A1A9YJ25   A5H0I4   B0X9W8   Q9VMY0   D3TPW1   B5RIQ5   A0A3B0K2D4   A0A0M4E2X2   Q29MA7   A0A1Q3F8T1   Q8T0E8   B4G9I5   A0A182JBB3   A0A1J1I0V7   B4N0I4   A0A1A9UPK7   A0A1B0AJQ4   A0A1A9WKN1   A0A1B0AT68   A0A2P8ZEJ4   A0A0K8VNC5   A0A2J7Q9A5   A0A0R3NSJ9   W8C8U0   A0A1B0FAW6   A0A067RW06   A0A1B6DTC5   A0A1B6D936   T1JTM9   A0A226F4J5   R7VDT7   A0A3B3ZZA9   A0A1B6GMC0   A0A3B3ZZB5  

PDB

2AST     E-value=0.00393628,     Score=92

KEGG

101742147    K10281 F-box and leucine-rich repeat protein 15 | (RefSeq) F-box/LRR-repeat protein 15

GO

GO:0019005   GO:0006511   GO:0031146   GO:0016567   GO:0016874   GO:0003676   GO:0045475   GO:0043153   GO:0008270   GO:0019888   GO:0000159   GO:0005634   GO:0007165   GO:0004842   GO:0005654   GO:0005829   GO:0007623   GO:0005515   GO:0006355   GO:0016747   GO:0000786   GO:0003677   GO:0006334   GO:0003779   GO:0016021  

PANTHER

PTHR10257  

Length:

217

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0084

Exp number, first 60 AAs:

0.00089

Total prob of N-in:

0.03130

outside

1  -  217

 

 

Pi

57.739875

Theta

112.10612

Tajima's D

-1.207346

CLR

1210.703955

CSRT

0.102044897755112

Interpretation

Possibly Positive selection