Silkworm Genome Informatics Database

Gene

KWMTBOMO01074

Pre Gene Modal

BGIBMGA007417

Annotation

tyrosine-protein_phosphatase_[Bombyx_mori]

Location

Bomo_Chr3(+):1658126-1663001 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.291

CDS

ATGTTACATAATTGTGAAGAAGATTCTGGGCGAAGTTCCTGCTCAGCTTCAGGTGGCTTGAGTCCAATTATTGACAAGATGAATTTTGACTCATCTCCAATTGATTTATCAAAATTGAAGCATATGAAAAGACATTCAAAAGACTTCAGTAGTAATACTGATCTAAAAGTCAGCAACCGTCCAAGAAGTTTTGTAAGCCTATTGAAGTCTCCAGATGAAAAAGACCCTTTTCCGAGCTACAGGCTGCCCAGACATCACAGACAACCTGTTCTTAATCTATTTAATATGTCAAGACGAGGGGGACTTAGTACTGCACACTCTACTTTAGATATAGCAAGTAGTACTCAAATAGAAACAGCAGAGCCCAGATTACAAAATAACACTCTATCAATGAACGCTATTCTGAAAAATGACTTTGTTCATAAAAATACATGTAAAACTATGAATTTCAGACGAGGGAAACCTGTTCAAAGGGCAGCTTCTCGACTTTATAAAGCTGACAGTGATGCCAAAGGCAAAGAAGGATGCACCGGTCCAGAGTTTATTGTGAGAGCTTCACAATCTCCCAGGAAGTTAGATCTGACGCTTTCGGCTAATTCTGATCGAAAAATTATAAATGTGGTGTTGCTTAATGGCCAACAATTTGAAGTGACTTGTGACTCAAACATCATAACCGCCGGCCAACTCTTTGAAGCTTTAATACACAGTGAGAAATATGAACACAATTTCATGTTAGGTATAGCTGCTTTGATTGGTGGAGATTTTGTTTTCTTACCAGATGACTATAAATTAAAAAAGCTAGCTCCAGATGGCTGGCACAAAGCAAATTGTAAGAAGAACAAAATATTAGTAGAAGATGACTCTATGACTGTGTTCTTGAGGATAAAATTCTTCCTCCCAAAGAACATATCAAATAATATTCAAGATGGGGAGTGGCAGTACAGAGTGTATTTACAACTGAGAAGAGCTACTGTTGAAGGTCAATTAACTTCAACTATACAGAATCTTATACTGTTAGCTGGTTATGCCTTGCACGTTGAATTTGGTGAGTTTTCCTACAGAGAACATGGAAGTGCAGATTATTTTTTACTAGAACATTATTTACCTGAAACAGTTATTACAAATAATATGGCTGATATTAAATTGCGCATGAAAAGAGCTCATGAATCTCGACATGGATTAGATAGGAATAAAGCTATTATCAACTTCATTACGCTAGCTCAAACGTTTCGCGATTATGGAGCTCATTTCTACTCTGCAGTGTGGTCTACTCGCGATGGCTTCTGTAGGGATGTGTGGCTATCCATTGGTCCACGAGGAATTACCATCTATTCTCGATACAATCAGATGTCTATCGAATCATGTTCAACTAACCGCATTGTGCTCCAATGCCTGCCTTGGCATCATATACGCACATTTTATTACAACAAAAAGAGCCTTTATATAATTCCGAACTCATATTCTGGTCTATCCAAAATTGGGATAAAGTACAAGCTTAAAATGACAGATAACAAGAGTTATTTTTCATTTTGGTTAGCTTCATTGCACCACAGATTGTATTTGAAGCTTTATGCTAAGGAAGACTTTATAAACTATTTGGCTGATGAACTTAATTGTGCAATAAACCAAGAGGGAAGTCCTAAGAAAGTGGAATGTAGCAACTATCAAGACAGCTATAATCTAGCAGTAAGAAATCCTATAAGGTCAAAACGGCCTATGCGACGAAGATTTAAAATGGATATTTTTGGTGACAAAAACAAAGAAAATGAGAAGCCTAATACAGAAGAACTATTAAGGCAAGTGCTTTCTCCACTGCACAGTGAAGAAAATTTGCTAAACACATCCACCATGGACCTTCACCGTGAAAACTCTTCAAATGAATGCCTTTCTTCTTCAGAAAGCTGTAGCTTACCAAAAAGACACGGTGTCAAAATGGGAACAAGAGTTTTTAATGGAATGAAACCGTTTAATAAGTACGGACAAACATCACCGCCCAACAACTACACTAACCATCATAGGTCTGATGAAATTGTAACTACCCAAAGTGACTCTGATGATTTTAGTCTAGACAGAAAACAGTGTACTATAAACAGTATGAGATTGTTACCAGAAAGACATTACAATACCAGTTTATCGAATATACCTACAGCATATGTATTGGAGTCTCCCAAAATATACCCAGAAAACCATTGCTATATAGCTTCGAACGATTCTTGTCTTAATACATCACTGTTTGAAAGGCTAGATAATATGGAGTGTGTACAAGGCGAAAGACTGTTTGTTACCGCTGTTTTGCAAAGAGACCAAATGAATGCTTTAGGGCTGCAGGTAGCAGAAGGGTCTGATGGTAACGTGTATATTAAGTCGATCACATCAGGAAGTCCAGCAGATGCTTGCAAAAAATTATTACCCGGGGACCAAATCATATCTGTGAATGGTAAGACACTGTTGAATATAAAATACGACAAAGCTCTTGAACTGTTGCAATCCGCCCCGCAAACTGTCGAACTTATAGTCCTACAAAACTCTCAGAAATATAGCCACATAAGTACGACTGAAGCTGATACTAGTGATACAGATATTTGTAAAATAAGTGGCAGTATCGGCAGTGCCTTAGACACAGAAATAACTGATGATGAATTGCTTAATGAAGAAGCACTGAAAACTATTTACGCGCTAATAAAATTCACAAAAGAAAAAGTAATAAATAGAATTAAAGAAAAGCCAACCAGACAAAATTCACCCAATGAAAGAAGCTTATATAAAAGTTCCTCCGAGAATAAAGTGTATGAAGAAAATGACTTAGGAACTTGTTCGTCCCAAGAAGACACACCACAAAAGAAAAATAAGTTCGATACGTGGCGCAGCTGTGTTTCGGACAGCAGACCAAGAAGAAGACCTTTGAGCTTGAGTATACCGAAAGAAATCAATTTTGATCGCTATTTAGATGAAAATAATAAGATCAAAAAGTCATCTCTGGTTTGCTTGCAAACAGCACCGAGCGGCCCTAGTGACGATGATAATAACTCCGTTAAAAATGTTGCTTTACCGCGAAATTTCGGGCTGAGTCGAAAGTGGGTCGGTCCCGTGAGATACCCCGTGACTCCGTGTAAGAATGTCGCCCCCGAAGCTGGGGCAGCTTCAAGATCAGACGCTGACGTTACGAGAAGGCACTTCGTCTACGGCATTGGCGACTCTGACGAAGATCAGATATTTTTATAA

Protein

MLHNCEEDSGRSSCSASGGLSPIIDKMNFDSSPIDLSKLKHMKRHSKDFSSNTDLKVSNRPRSFVSLLKSPDEKDPFPSYRLPRHHRQPVLNLFNMSRRGGLSTAHSTLDIASSTQIETAEPRLQNNTLSMNAILKNDFVHKNTCKTMNFRRGKPVQRAASRLYKADSDAKGKEGCTGPEFIVRASQSPRKLDLTLSANSDRKIINVVLLNGQQFEVTCDSNIITAGQLFEALIHSEKYEHNFMLGIAALIGGDFVFLPDDYKLKKLAPDGWHKANCKKNKILVEDDSMTVFLRIKFFLPKNISNNIQDGEWQYRVYLQLRRATVEGQLTSTIQNLILLAGYALHVEFGEFSYREHGSADYFLLEHYLPETVITNNMADIKLRMKRAHESRHGLDRNKAIINFITLAQTFRDYGAHFYSAVWSTRDGFCRDVWLSIGPRGITIYSRYNQMSIESCSTNRIVLQCLPWHHIRTFYYNKKSLYIIPNSYSGLSKIGIKYKLKMTDNKSYFSFWLASLHHRLYLKLYAKEDFINYLADELNCAINQEGSPKKVECSNYQDSYNLAVRNPIRSKRPMRRRFKMDIFGDKNKENEKPNTEELLRQVLSPLHSEENLLNTSTMDLHRENSSNECLSSSESCSLPKRHGVKMGTRVFNGMKPFNKYGQTSPPNNYTNHHRSDEIVTTQSDSDDFSLDRKQCTINSMRLLPERHYNTSLSNIPTAYVLESPKIYPENHCYIASNDSCLNTSLFERLDNMECVQGERLFVTAVLQRDQMNALGLQVAEGSDGNVYIKSITSGSPADACKKLLPGDQIISVNGKTLLNIKYDKALELLQSAPQTVELIVLQNSQKYSHISTTEADTSDTDICKISGSIGSALDTEITDDELLNEEALKTIYALIKFTKEKVINRIKEKPTRQNSPNERSLYKSSSENKVYEENDLGTCSSQEDTPQKKNKFDTWRSCVSDSRPRRRPLSLSIPKEINFDRYLDENNKIKKSSLVCLQTAPSGPSDDDNNSVKNVALPRNFGLSRKWVGPVRYPVTPCKNVAPEAGAASRSDADVTRRHFVYGIGDSDEDQIFL

Uniprot

Q2F5V4 H9JD20 A0A2H1WYU0 A0A2W1BR34 A0A194QAD8 A0A194R593 + More
A0A0L7KYK2 A0A1J1I6C1

Pubmed

19121390 28756777 26354079 26227816

EMBL

DQ311319 ABD36263.1 BABH01027707 ODYU01012102 SOQ58221.1 KZ150062 + More
PZC74203.1 KQ459232 KPJ02498.1 KQ460685 KPJ12847.1 JTDY01004454 KOB68141.1 CVRI01000041 CRK95274.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000037510 UP000183832

PRIDE

Q2F5V4 H9JD20

Pfam

PF00373   FERM_M        + More
PF09379   FERM_N
PF09380   FERM_C
PF00595   PDZ

Interpro

IPR000299   FERM_domain        + More
IPR018980   FERM_PH-like_C
IPR019748   FERM_central
IPR036034   PDZ_sf
IPR001478   PDZ
IPR018979   FERM_N
IPR035963   FERM_2
IPR019749   Band_41_domain
IPR014352   FERM/acyl-CoA-bd_prot_sf
IPR036265   HIT-like_sf
IPR029071   Ubiquitin-like_domsf
IPR019747   FERM_CS

SUPFAM

SSF47031   SSF47031        + More
SSF50156   SSF50156
SSF54236   SSF54236
SSF54197   SSF54197

Gene 3D

1.20.80.10 3.30.428.10

CDD

cd14473 FERM_B-lobe

ProteinModelPortal

Q2F5V4 H9JD20 A0A2H1WYU0 A0A2W1BR34 A0A194QAD8 A0A194R593 + More
A0A0L7KYK2 A0A1J1I6C1

PDB

4YL8 E-value=6.0972e-13, Score=184

KEGG

692909 K02374 tyrosine-protein phosphatase non-receptor type 13 | (RefSeq) tyrosine-protein phosphatase

GO

GO:0005856 GO:0005515 GO:0016192 GO:0006886 GO:0048280 GO:0008565 GO:0016020 GO:0051015 GO:0003779 GO:0016021

Length:

1073

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0474700000000002

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00224

outside

1 - 1073

Pi

153.279329

Theta

159.514862

Tajima's D

-0.464123

CLR

1.060058

CSRT

0.249187540622969

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics