SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01073  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007350
Annotation
PREDICTED:_vesicle_transport_through_interaction_with_t-SNAREs_homolog_1A_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.612 Nuclear   Reliability : 1.19
 

Sequence

CDS
ATGGCCACATTAGTGCAATCTTATGAGCAGCAATATTCGGTGCTTACTGCCGACATCACCGCAAAAATAGGACGATTAAAAAATGGCACTGCAGAAAACCGAGAACAATTATCAAGAGAAATACAGTCAAACTTTGAAGAGGCAAATGATTTGTTGGAACAGTTGGAGTTGGAAGCACGAGGTCCCCGTGTAGCTGCTTACCGTGCTGAACTGCAGCGAGTCAAACAACAGTTCAAAACTACACTCGGAACCAATGGACATTTAGTGGGTGAGGTGTCGGAGAGCGAGGACTGGGGTGCGGGCGATGAGCGCCGACAGTTGCTCGACAACTCAGAGCGCCTTGAACGCGGAGGCCGAGTTTTGTCTGAAGGATATAGAGTCCTACTCGAGACTGAACAGGTGGGAGCAGCTGTGCTGCAGGATCTCAGCGTACAGCGGGAGACCATACAGCGGTCGCGCGCTCGGCTGCGCGAGACCGACGAGGAGCTGGATCGGTCGTGGCGGGTGGCGGCGGGCATGTCGGCGCGCGCGCTGCGGCACCGCGCGCTGCTGCTGGCGGCGCTGGGCGCGCTGGCGCTGCTCACGGGGCTGGCGCTCTACCTGGCGCTGTCCTGA
Protein
MATLVQSYEQQYSVLTADITAKIGRLKNGTAENREQLSREIQSNFEEANDLLEQLELEARGPRVAAYRAELQRVKQQFKTTLGTNGHLVGEVSESEDWGAGDERRQLLDNSERLERGGRVLSEGYRVLLETEQVGAAVLQDLSVQRETIQRSRARLRETDEELDRSWRVAAGMSARALRHRALLLAALGALALLTGLALYLALS

Summary

EMBL
BABH01027707    ODYU01012102    SOQ58220.1    NWSH01006514    PCG63386.1    KQ459232    + More
KPJ02497.1    KZ150062    PZC74204.1    JTDY01002675    KOB70964.1    PYGN01000333    PSN48346.1    KQ977329    KYN03515.1    GL439543    EFN67106.1    GL888120    EGI67016.1    KQ981276    KYN43537.1    KQ976444    KYM86231.1    KQ983089    KYQ47542.1    KQ980591    KYN15209.1    KQ435124    KZC14765.1    KK107161    EZA56616.1    KK852428    KDR24064.1    KQ435782    KOX74768.1    GL771866    EFZ09227.1    KZ288358    PBC27082.1    GANO01001776    JAB58095.1    ADTU01004533    GEBQ01030637    JAT09340.1    LJIG01009144    KRT83667.1    JO840692    AEO32309.1    GALX01005954    JAB62512.1    DS231951    EDS28641.1    KQ971361    EFA08782.2    GFPF01013297    MAA24443.1    GEDC01022589    JAS14709.1    GFAC01004439    JAT94749.1    JO842730    AEO34347.1    CH477575    EJY57800.1    GACK01007773    JAA57261.1    GEFH01004877    JAP63704.1    AJWK01027095    GFDL01012359    JAV22686.1    BT127437    AEE62399.1    APGK01035587    KB740928    KB632064    ENN77867.1    ERL88487.1    GFDF01003621    JAV10463.1    DS235150    EEB12551.1    GDAI01000330    JAI17273.1    GFDL01013061    JAV21984.1    JXUM01146432    KQ570172    KXJ68432.1    GGFK01011029    MBW44350.1    ACPB03002742    GBBI01003872    JAC14840.1    GBZX01002155    JAG90585.1    GEZM01021491    JAV88979.1    GAMD01002556    JAA99034.1    GGFJ01009275    MBW58416.1    ADMH02001356    GGFL01004480    ETN62886.1    MBW68658.1    GECU01015487    JAS92219.1    KQ414864    KOC60000.1    QOIP01000003    RLU24869.1    GGFM01008066    MBW28817.1    AAAB01008835    EAA05799.2    PZQS01000001    PVD38626.1    GG666583    EEN52161.1    GFWV01009036    MAA33765.1    GL446390    EFN87873.1    NEDP02001389    OWF53325.1    AXCN02000844    DS469814    EDO32619.1    GBBM01002489    JAC32929.1    GBHO01034489    GDHC01017987    JAG09115.1    JAQ00642.1    GBRD01004709    GDHC01014984    JAG61112.1    JAQ03645.1    GADI01003739    JAA70069.1    ABJB010276328    ABJB010281412    ABJB010341993    ABJB010617370    DS636786    EEC01568.1    APCN01004213    GEFM01006812    JAP68984.1    AMQN01000950    KB297742    ELU10032.1    CH940647    EDW69440.1    GDIP01150112    GDIQ01031431    LRGB01002536    JAJ73290.1    JAN63306.1    KZS07224.1    GDIQ01110654    JAL41072.1    GDIQ01137451    JAL14275.1    CH480817    EDW49954.1    GANP01009607    JAB74861.1    GBFC01000086    JAC59252.1    CM000363    CM002912    EDX08717.1    KMY96709.1    GDIP01209303    JAJ14099.1   
Pfam
PF05008   V-SNARE        + More
PF01145   Band_7
PF09734   Tau95
Interpro
IPR007705   Vesicle_trsprt_v-SNARE_N        + More
IPR010989   SNARE       
IPR038407   v-SNARE_N_sf       
IPR000727   T_SNARE_dom       
IPR027027   GOSR2/Membrin/Bos1       
IPR001107   Band_7       
IPR000163   Prohibitin       
IPR036013   Band_7/SPFH_dom_sf       
IPR019136   TF_IIIC_su-5_HTH       
SUPFAM
SSF47661   SSF47661        + More
SSF117892   SSF117892       
Gene 3D
PDB
2NPS     E-value=2.05578e-09,     Score=145

Ontologies

Topology

Length:
204
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.33537
Exp number, first 60 AAs:
0.00067
Total prob of N-in:
0.85413
inside
1  -  180
TMhelix
181  -  203
outside
204  -  204
 
 

Population Genetic Test Statistics

Pi
213.044629
Theta
163.777374
Tajima's D
0.839502
CLR
0
CSRT
0.611269436528174
Interpretation
Uncertain
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