Gene

KWMTBOMO01068  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007412

Annotation

ribosomal_protein_L34_[Bombyx_mori]

Location

Bomo_Chr3(+):1617546-1620072      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.678 Nuclear   Reliability : 2.069

CDS

ATGGTGCAGCGGCTTACATTCAGGCGACGACTGTCGTACAACACAAAATCAAATCAAAGAAGAATAGTAAGGACACCGGGTGGCCGCTTGGTTTATCAGTATGTAAAAAAGCCCAAGAAGATCCCAAGGTGTGGTCAGTGCAAGAGCAAACTCCGTGGTATCCAGCCAGCTAGACCTGCTGAACGTTCCCGTCTTTGCTACCGTAAGAAAACAGTGAAACGTGTTTATGGTGGTGTCCTCTGCCATAAATGTGTCAAGCAACGCATTGTCAGAGCCTTCCTCATTGAAGAACAAAAAATTGTGAAGGTCCTCAAGGCACAACAGGCGAGCACTAAGTCGGCAAAGAAGGCTACAAAGTGA

Protein

MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVLKAQQASTKSAKKATK

Uniprot

Q5UAQ5   H9JD15   E7DZ35   S4P9J0   I4DIR8   A0A2A4AYF3   + More
I4DM83   G0ZEF3   A0A2W1BH99   A0A2A4IZB4   Q8WQI6   D1LYR1   A0A348G685   A0A026W3W6   E9IIL0   A0A0J7NX82   E2C3J4   A0A195DP73   A0A195CEN0   F4W4I4   A0A195BIL4   A0A195EZK3   A0A158P344   A0A151WYV0   A0A0C9RTA8   A0A0M9A828   A0A0L7RD07   E2A1C6   A0A2A3EN18   V9IES4   A0A087ZS49   A0A232ERU9   K7IPQ5   A0A310SIQ8   A0A1B6GWI3   A0A1B6LCX8   J3JWP9   A0A1B6DU97   A0A154PIW3   A0A067RTB0   A0A2J7Q963   A0A2P8YVS7   Q56FE2   D6WX26   Q56FK7   E0VDZ5   Q4GXA7   A0A069DVR0   D1M814   A0A224XPL9   A0A0P4VQ52   R4G4L6   R4WN65   A0A2R7WQV6   A0A0T6B8K2   A0A1Y1MAQ1   A0A0A9YC41   G1K0D9   A0A1W4WNY7   A0A0X7YC75   T1PA35   A0A0A1WRD3   A0A0C9R2Z2   A0A1I8P4B9   A0A1A9Y3G1   A0A1A9VMJ9   A0A1B0ASD5   A0A1B0AEJ5   A0A0K8U1V5   A5HMP3   A0A034V3D5   W8BT07   A0A0K8TQC9   A0A1A9WW85   A0A0L0CFU5   B4NK43   B4LYT3   A0A0M4EUG8   B4K6E1   A0A1B0FRI1   B2M125   B4JGK0   A0A1L8EF18   D3TQW9   A0A3B0KUQ9   U5ERT5   B5DX54   B4GEF3   B3LY25   B4N920   A0A1W4VPZ2   B3M065   B5DYD5   B4GP54   A0A3B0JK54   Q6XHN0   B3P1Q6   Q9VHE5   B4IMX4  

Pubmed

26276225    19121390    23622113    22651552    28756777    14668217    + More
26263512    24508170    21282665    20798317    21719571    21347285    28648823    20075255    22516182    23537049    24845553    29403074    18362917    19820115    20566863    26334808    27129103    23691247    28004739    25401762    26823975    21736942    25315136    25830018    25348373    24495485    26369729    26108605    17994087    20353571    15632085    14525923    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

AY769303    KP019933    AAV34845.1    AJP00136.1    BABH01027696    HQ424738    + More
ADT80682.1    GAIX01009040    JAA83520.1    AK401186    BAM17808.1    NWMT01000057    PCD00742.1    AK402401    BAM19023.1    JF265031    AEL28862.1    KZ150062    PZC74208.1    NWSH01004393    PCG65165.1    AY072290    KT218666    ODYU01002347    AAL62471.1    ALA09386.1    SOQ39727.1    GU084335    ACY95368.1    FX985627    BBF97958.1    KK107447    EZA50747.1    GL763494    EFZ19578.1    LBMM01001046    KMQ97020.1    GL452320    EFN77532.1    KQ980713    KYN14289.1    KQ977935    KYM98681.1    GL887532    EGI70879.1    KQ976467    KYM84153.1    KQ981905    KYN33556.1    ADTU01007744    KQ982649    KYQ53072.1    GBYB01011970    JAG81737.1    KQ435714    KOX79160.1    KQ414615    KOC68646.1    GL435760    EFN72752.1    KZ288204    PBC33155.1    JR042120    AEY59555.1    NNAY01002575    OXU21016.1    KQ764883    OAD54302.1    GECZ01003054    JAS66715.1    GEBQ01018429    JAT21548.1    APGK01035587    BT127667    KB740928    KB632064    AEE62629.1    ENN77866.1    ERL88488.1    GEDC01022857    GEDC01008048    JAS14441.1    JAS29250.1    KQ434931    KZC11775.1    KK852428    KDR24050.1    NEVH01016943    PNF25124.1    PYGN01000333    PSN48341.1    AY961558    AAX62460.1    KQ971361    EFA08054.1    AY961493    AAX62395.1    DS235088    EEB11601.1    AM049116    CAJ17416.1    GBGD01003515    JAC85374.1    GU120438    ACY71288.1    GFTR01001991    JAW14435.1    GDKW01002052    JAI54543.1    ACPB03022415    GAHY01001250    JAA76260.1    AK417041    BAN20256.1    KK855312    PTY21953.1    LJIG01009144    KRT83668.1    GEZM01037431    JAV82068.1    GBHO01014936    GBRD01002537    GBRD01002536    GDHC01007945    JAG28668.1    JAG63284.1    JAQ10684.1    JO495021    AEL79250.1    KC507357    AHB12480.1    KA645597    AFP60226.1    GBXI01012915    JAD01377.1    GBYB01010609    JAG80376.1    JXJN01002732    GDHF01032019    JAI20295.1    EF541360    ABQ18250.1    GAKP01022697    JAC36255.1    GAMC01002095    JAC04461.1    GDAI01001245    JAI16358.1    JRES01000536    KNC30359.1    CH964272    EDW85085.1    CH940650    EDW67010.1    CP012526    ALC46730.1    CH933806    EDW15214.1    CCAG010000500    EU603270    ACC77573.1    CH916369    EDV93697.1    GFDG01001472    JAV17327.1    EZ423821    ADD20097.1    OUUW01000023    SPP89566.1    GANO01003582    JAB56289.1    CM000070    EDY68213.1    CH479182    EDW33988.1    CH902617    EDV42881.1    CH964232    EDW81567.1    EDV42022.1    EDY67587.1    CH479186    EDW38937.1    OUUW01000005    SPP81173.1    AY232153    CM000160    AAR10176.1    EDW96644.1    CH954181    EDV49794.1    AE014297    AY089676    AAF54369.1    AAL90414.1    AAN13422.1    AHN57248.1    AHN57249.1    CH481247    EDW52814.1   

Proteomes

UP000005204    UP000243750    UP000218220    UP000053097    UP000036403    UP000008237    + More
UP000078492    UP000078542    UP000007755    UP000078540    UP000078541    UP000005205    UP000075809    UP000053105    UP000053825    UP000000311    UP000242457    UP000005203    UP000215335    UP000002358    UP000019118    UP000030742    UP000076502    UP000027135    UP000235965    UP000245037    UP000007266    UP000009046    UP000015103    UP000192223    UP000095301    UP000095300    UP000092443    UP000078200    UP000092460    UP000092445    UP000091820    UP000037069    UP000007798    UP000008792    UP000092553    UP000009192    UP000092444    UP000001070    UP000268350    UP000001819    UP000008744    UP000007801    UP000192221    UP000002282    UP000008711    UP000000803    UP000001292   

PRIDE

Q5UAQ5    H9JD15    Q9VHE5   

Pfam

PF01199   Ribosomal_L34e

Interpro

IPR038562   Ribosomal_L34Ae_sf        + More
IPR018065   Ribosomal_L34e_CS       
IPR008195   Ribosomal_L34Ae       

Gene 3D

3.40.1800.40    

ProteinModelPortal

Q5UAQ5   H9JD15   E7DZ35   S4P9J0   I4DIR8   A0A2A4AYF3   + More
I4DM83   G0ZEF3   A0A2W1BH99   A0A2A4IZB4   Q8WQI6   D1LYR1   A0A348G685   A0A026W3W6   E9IIL0   A0A0J7NX82   E2C3J4   A0A195DP73   A0A195CEN0   F4W4I4   A0A195BIL4   A0A195EZK3   A0A158P344   A0A151WYV0   A0A0C9RTA8   A0A0M9A828   A0A0L7RD07   E2A1C6   A0A2A3EN18   V9IES4   A0A087ZS49   A0A232ERU9   K7IPQ5   A0A310SIQ8   A0A1B6GWI3   A0A1B6LCX8   J3JWP9   A0A1B6DU97   A0A154PIW3   A0A067RTB0   A0A2J7Q963   A0A2P8YVS7   Q56FE2   D6WX26   Q56FK7   E0VDZ5   Q4GXA7   A0A069DVR0   D1M814   A0A224XPL9   A0A0P4VQ52   R4G4L6   R4WN65   A0A2R7WQV6   A0A0T6B8K2   A0A1Y1MAQ1   A0A0A9YC41   G1K0D9   A0A1W4WNY7   A0A0X7YC75   T1PA35   A0A0A1WRD3   A0A0C9R2Z2   A0A1I8P4B9   A0A1A9Y3G1   A0A1A9VMJ9   A0A1B0ASD5   A0A1B0AEJ5   A0A0K8U1V5   A5HMP3   A0A034V3D5   W8BT07   A0A0K8TQC9   A0A1A9WW85   A0A0L0CFU5   B4NK43   B4LYT3   A0A0M4EUG8   B4K6E1   A0A1B0FRI1   B2M125   B4JGK0   A0A1L8EF18   D3TQW9   A0A3B0KUQ9   U5ERT5   B5DX54   B4GEF3   B3LY25   B4N920   A0A1W4VPZ2   B3M065   B5DYD5   B4GP54   A0A3B0JK54   Q6XHN0   B3P1Q6   Q9VHE5   B4IMX4  

PDB

4V6W     E-value=4.13649e-30,     Score=321

KEGG

100101149    K02915 large subunit ribosomal protein L34e | (RefSeq) RpL34; ribosomal protein L34

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0022625   GO:0042254   GO:0017022   GO:0022626   GO:0002181   GO:0005622   GO:0016020   GO:0004702   GO:0007178   GO:0051015   GO:0003779   GO:0016021  

PANTHER

PTHR10759  

Length:

119

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00152

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.68924

inside

1  -  119

 

 

Pi

206.082823

Theta

170.444982

Tajima's D

0.67366

CLR

0.33003

CSRT

0.56277186140693

Interpretation

Uncertain