Gene

KWMTBOMO01062

Pre Gene Modal

BGIBMGA007359

Annotation

PREDICTED:_transcription_initiation_factor_TFIID_subunit_9_[Amyelois_transitella]

Location

Bomo_Chr3(-):1362858-1364715      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.896

CDS

ATGTCAGAGAAAGACAAATCCAAATCGGGTGGTCAAGCTAAGCACATTCCCAAAGATGCCCAAGTCATCATGTCCATCATGAAGGAAGTAGGTATCACTGACTATGAACCGAGAGTCGTGAACCAGCTCCTAGAATTCACATACCGCTACGTTACATCAGTATTAGATGATGCAAGGATATTTGCAAACCACGCAAAAAAGAAAACTATAGATCTTGATGATGTGAGACTGTCAGCTCAAATGCAATTGGACAAGTCCTTCACGAATCCCCCGCCCCGTGAAGTGCTACTGGAGATCGCGAGGGTCAAGAATGTTAATCCTTTGCCGTTGATAAAGCCGCATTGCGGGTTAAGACTGCCTCCGGATCGTTACTGCCTGTCATCCTGTAATTACAAACTGAAACCAGCAACCAAGAAAGTGATCACAAAAACTACGATAACCCCTTCCCCGTCCATAAAAACGGTCACCACATCCAAAGCACCTCAACAGACAGTTGTTATGAAGAGACCACCGGGAGCAATTGTGAATGTGGGCACCCCAAAAACCAGTCTCGGAACAAAACCTGTACTGAAATTTTCATCAAGCAGTAAAGTAGTAAAACCAGCTGTAAGAGTGACAGCTGGTCCTTCCTCACAGGCTCCTATCAAGATGGAGACAGACGAGCCAATGAGCCACAAACGGAAAAGAGAAGACGACGATTATGATCTATAA

Protein

MSEKDKSKSGGQAKHIPKDAQVIMSIMKEVGITDYEPRVVNQLLEFTYRYVTSVLDDARIFANHAKKKTIDLDDVRLSAQMQLDKSFTNPPPREVLLEIARVKNVNPLPLIKPHCGLRLPPDRYCLSSCNYKLKPATKKVITKTTITPSPSIKTVTTSKAPQQTVVMKRPPGAIVNVGTPKTSLGTKPVLKFSSSSKVVKPAVRVTAGPSSQAPIKMETDEPMSHKRKREDDDYDL

Uniprot

H9JCW2   A0A212EUX8   A0A2W1BHT4   A0A1E1W4L9   A0A194QAM8   A0A2H1VNF8   + More
A0A194R4V3   S4NSR5   I4DL35   U5EWA0   A0A182QSH8   A0A182LZ94   A0A151X181   A0A182W0E1   A0A182HIZ6   A0A154P039   Q174Q8   A0A182LC46   A0A067QIL3   E2B8Z4   A0A088ALQ7   A0A1B6EI63   A0A1B6F807   A0A1B0DL13   A0A1B0CUF5   A0A2P8XIT5   A0A1B6L0J5   A0A026WGJ1   A0A310SGC6   E2AZI9   A0A158NMH0   A0A195AZ81   A0A1B6I248   A0A151JS59   A0A195CVL2   K7IPE7   A0A0J7KHV1   A0A151JVT4   A0A0L7R3P2   A0A232FFK3   A0A0C9QMX1   F4WI39   A0A1L8DFQ9  

Pubmed

19121390    22118469    28756777    26354079    23622113    22651552    + More
17510324    20966253    24845553    20798317    29403074    24508170    30249741    21347285    20075255    28648823    21719571   

EMBL

BABH01027676    AGBW02012284    OWR45289.1    KZ150083    PZC73831.1    GDQN01009129    + More
JAT81925.1    KQ459232    KPJ02489.1    ODYU01003480    SOQ42338.1    KQ460685    KPJ12838.1    GAIX01013952    JAA78608.1    AK402003    BAM18625.1    GANO01000658    JAB59213.1    AXCN02000299    AXCM01005162    KQ982601    KYQ54016.1    APCN01002105    KQ434786    KZC05202.1    CH477406    EAT41595.1    KK853310    KDR08665.1    GL446405    EFN87828.1    GECZ01032144    JAS37625.1    GECZ01023401    JAS46368.1    AJVK01016159    AJWK01029142    PYGN01001986    PSN31917.1    GEBQ01022728    JAT17249.1    KK107238    QOIP01000007    EZA54811.1    RLU20491.1    KQ767757    OAD53325.1    GL444238    EFN61153.1    ADTU01020485    KQ976697    KYM77548.1    GECU01026694    JAS81012.1    KQ978577    KYN30040.1    KQ977231    KYN04716.1    LBMM01007354    KMQ89809.1    KQ981676    KYN38154.1    KQ414663    KOC65454.1    NNAY01000286    OXU29482.1    GBYB01002007    JAG71774.1    GL888172    EGI66132.1    GFDF01008813    JAV05271.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000053240    UP000075886    UP000075883    + More
UP000075809    UP000075920    UP000075840    UP000076502    UP000008820    UP000075882    UP000027135    UP000008237    UP000005203    UP000092462    UP000092461    UP000245037    UP000053097    UP000279307    UP000000311    UP000005205    UP000078540    UP000078492    UP000078542    UP000002358    UP000036403    UP000078541    UP000053825    UP000215335    UP000007755   

PRIDE

H9JCW2   

Pfam

PF02291   TFIID-31kDa

Interpro

IPR009072   Histone-fold        + More
IPR003162   TFIID-31       

SUPFAM

SSF47113   SSF47113       

Gene 3D

1.10.20.10    

CDD

cd07979  TAF9

ProteinModelPortal

H9JCW2   A0A212EUX8   A0A2W1BHT4   A0A1E1W4L9   A0A194QAM8   A0A2H1VNF8   + More
A0A194R4V3   S4NSR5   I4DL35   U5EWA0   A0A182QSH8   A0A182LZ94   A0A151X181   A0A182W0E1   A0A182HIZ6   A0A154P039   Q174Q8   A0A182LC46   A0A067QIL3   E2B8Z4   A0A088ALQ7   A0A1B6EI63   A0A1B6F807   A0A1B0DL13   A0A1B0CUF5   A0A2P8XIT5   A0A1B6L0J5   A0A026WGJ1   A0A310SGC6   E2AZI9   A0A158NMH0   A0A195AZ81   A0A1B6I248   A0A151JS59   A0A195CVL2   K7IPE7   A0A0J7KHV1   A0A151JVT4   A0A0L7R3P2   A0A232FFK3   A0A0C9QMX1   F4WI39   A0A1L8DFQ9  

PDB

6MZM     E-value=1.10539e-35,     Score=373

KEGG

101741053    K03133 transcription initiation factor TFIID subunit 9B | (RefSeq) transcription initiation factor T

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0006352   GO:0046982   GO:0003743   GO:0016491   GO:0006412   GO:0051539   GO:0009451   GO:0007155   GO:0051015   GO:0003779   GO:0016021  

Length:

236

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000510000000000001

Exp number, first 60 AAs:

0.00035

Total prob of N-in:

0.12810

outside

1  -  236

 

 

Pi

240.512577

Theta

209.47193

Tajima's D

0.454064

CLR

0.012971

CSRT

0.500124993750312

Interpretation

Uncertain