Gene

KWMTBOMO01061  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007409

Annotation

3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]

Location

Bomo_Chr3(+):1358606-1360122      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.645

CDS

ATGATGGAGTGGGGAAAGTCGGTCGGCAAGACCTGTATCACTTGCAAGGACACCCCTGGTTTCGTTGTGAATAGACTGTTGGTGCCTTACATATGTGAAGCCATTAGGTTGTACGAAAGAGGAGATGCATCAGCTCGAGACATTGATATAGCAATGAAGCTCGGCGCTGGCTACCCCATGGGTCCACTAGAACTGGCCGACTATGTTGGCTTAGACACAAACAAGTTTATCTTGGATGGCTGGCACAAGAAGTTTCCGGATCAGCAACTCTTCAAACCTATACCCTTGCTAGAAAAGCTTGTTGCTGAAGGAAAATTAGGTGTGAAGACTGGGGAAGGTTTCTACAAATACGAAAAGAAATAA

Protein

MMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEGFYKYEKK

Uniprot

E9NYX5   H9JD12   A0A0L7LKH8   A0A2W1BJH9   A0A2H1VFH8   A0A194R582   + More
A0A194QAC8   A0A068FKF7   I4DL36   A0A2A4J079   A0A212EUW0   S4P8W6   A0A0P6DWD7   A0A2P8XUD8   A0A0P6HK22   A0A0N7ZUY0   A0A0K8TLJ0   A0A0P5FNK2   A0A0P5SW38   A0A0P5CQ34   A0A0P5B598   A0A0P5KQY6   A0A0P5XWH8   A0A2J7Q956   U5EVM4   A0A164Q3S9   A0A0N8BD86   A0A1W4WRA7   A0A0P5FVV3   A0A0P5AD81   A0A0P5P3I4   A0A2J7Q954   A0A2J7Q952   A0A0P5HK78   A0A0N8DJA4   A0A1L8DYL4   A0A0N7ZZ61   A0A0P6DPQ1   A0A0P5ASC3   A0A1S4EJ38   A0A293LY25   A0A1B0C9M7   A0A0P6DMR6   A0A0T6AXY5   A0A1L8DYI5   A0A0P5MNB5   B0WI18   A0A1Q3FBD9   E9H317   R7UQ14   B8RJ37   A0A067R4R3   A0A182GVS0   Q17H10   A0A1E1XAL4   G3MNP3   A0A2R5L8S1   A0A131XLW9   A0A0C9S2F2   D6WWC6   R7URQ3   A0A224YGA0   A0A131YRV4   A0A023FJZ4   A0A1I8BPT8   A0A1B6FJH3   A0A1V9X114   L7M870   A0A2P6KS96   A0A2M4AEN2   A0A2M4AH39   V5GTA0   A0A131Y3K2   A0A1B6L7V5   A0A2M3Z628   A0A2H8TP71   A0A1B6GJP0   A0A2M4BV37   A0A212EV03   A0A1S3HUR3   A0A194QAI6   A0A2M4BVN9   W4XV06   T1DK38   A0A1X7VV03   A0A0T6AWW0   A0A2S2R4W1   A0A182M0W0   G0MGW4   A8XP12   A0A2G5SLD9   C1BQ93   A0A1S3H0U7   E0VKS4   B7QIS3   A0A0N7ZCX9   E2J7F6   W5JD80   A0A182SYZ0   A0A261CLY9  

Pubmed

19121390    26227816    28756777    26354079    26385554    22651552    + More
22118469    23622113    29403074    26369729    21292972    23254933    24845553    26483478    17510324    28503490    22216098    28049606    26131772    18362917    19820115    28797301    26830274    18809916    28327890    25576852    14624247    20566863    20920257    23761445   

EMBL

HQ833817    ADW77640.1    BABH01027674    JTDY01000766    KOB75952.1    KZ150083    + More
PZC73824.1    ODYU01002291    SOQ39585.1    KQ460685    KPJ12837.1    KQ459232    KPJ02488.1    KJ622104    AID66694.1    AK402004    BAM18626.1    NWSH01004652    PCG64812.1    AGBW02012284    OWR45288.1    GAIX01004004    JAA88556.1    GDIQ01075153    JAN19584.1    PYGN01001331    PSN35623.1    GDIQ01017985    JAN76752.1    GDIP01210097    JAJ13305.1    GDAI01002582    JAI15021.1    GDIQ01252151    JAJ99573.1    GDIP01137504    JAL66210.1    GDIP01171103    JAJ52299.1    GDIP01189446    JAJ33956.1    GDIQ01187769    JAK63956.1    GDIP01078957    JAM24758.1    NEVH01016943    PNF25118.1    GANO01001813    JAB58058.1    LRGB01002485    KZS07407.1    GDIQ01189171    JAK62554.1    GDIQ01250753    JAK00972.1    GDIP01200749    JAJ22653.1    GDIQ01140592    JAL11134.1    PNF25116.1    PNF25115.1    GDIQ01249196    JAK02529.1    GDIP01028215    JAM75500.1    GFDF01002567    JAV11517.1    GDIP01198249    JAJ25153.1    GDIQ01075154    JAN19583.1    GDIP01195152    JAJ28250.1    GFWV01008843    MAA33572.1    AJWK01002493    AJWK01002494    GDIQ01075152    JAN19585.1    LJIG01022602    KRT79701.1    GFDF01002566    JAV11518.1    GDIQ01154231    JAK97494.1    DS231941    EDS28100.1    GFDL01010175    JAV24870.1    GL732587    EFX73881.1    AMQN01021812    KB299170    ELU08290.1    EZ000462    ACJ64336.1    KK852699    KDR18231.1    JXUM01091695    JXUM01091696    KQ563935    KXJ73045.1    CH477254    EAT45913.1    GFAC01002901    JAT96287.1    JO843494    AEO35111.1    GGLE01001744    MBY05870.1    GEFH01001895    JAP66686.1    GBZX01001561    JAG91179.1    KQ971361    EFA08151.1    AMQN01007360    AMQN01007361    KB300512    ELU06582.1    GFPF01005550    MAA16696.1    GEDV01006574    JAP81983.1    GBBK01003052    JAC21430.1    GECZ01019429    JAS50340.1    MNPL01029600    OQR67194.1    GACK01005671    JAA59363.1    MWRG01006094    PRD29186.1    GGFK01005914    MBW39235.1    GGFK01006785    MBW40106.1    GALX01003589    JAB64877.1    GEFM01003315    JAP72481.1    GEBQ01020252    JAT19725.1    GGFM01003193    MBW23944.1    GFXV01003233    MBW15038.1    GECZ01028505    GECZ01027315    GECZ01007115    JAS41264.1    JAS42454.1    JAS62654.1    GGFJ01007670    MBW56811.1    OWR45287.1    KPJ02487.1    GGFJ01007667    MBW56808.1    AAGJ04005685    GAMD01001141    JAB00450.1    KRT79696.1    GGMS01015189    MBY84392.1    AXCM01004407    GL379794    EGT58024.1    HE600961    CAP34252.1    PDUG01000006    PIC15729.1    BT076772    ACO11196.1    DS235250    EEB13980.1    ABJB010622494    ABJB010803024    ABJB011090822    DS947584    EEC18745.1    GDRN01057402    JAI65696.1    HP429374    ADN29874.1    ADMH02001498    ETN62302.1    NIPN01000003    OZG23055.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000218220    UP000007151    + More
UP000245037    UP000235965    UP000076858    UP000192223    UP000079169    UP000092461    UP000002320    UP000000305    UP000014760    UP000027135    UP000069940    UP000249989    UP000008820    UP000007266    UP000095281    UP000192247    UP000085678    UP000007110    UP000007879    UP000075883    UP000008068    UP000008549    UP000230233    UP000009046    UP000001555    UP000000673    UP000075901    UP000216463   

PRIDE

E9NYX5    H9JD12    A8XP12   

Pfam

PF00725   3HCDH        + More
PF02737   3HCDH_N

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR006176   3-OHacyl-CoA_DH_NAD-bd       
IPR006180   3-OHacyl-CoA_DH_CS       
IPR008927   6-PGluconate_DH-like_C_sf       
IPR006108   3HC_DH_C       
IPR013328   6PGD_dom2       
IPR022694   3-OHacyl-CoA_DH       

SUPFAM

SSF51735   SSF51735        + More
SSF48179   SSF48179       

Gene 3D

1.10.1040.10    

ProteinModelPortal

E9NYX5   H9JD12   A0A0L7LKH8   A0A2W1BJH9   A0A2H1VFH8   A0A194R582   + More
A0A194QAC8   A0A068FKF7   I4DL36   A0A2A4J079   A0A212EUW0   S4P8W6   A0A0P6DWD7   A0A2P8XUD8   A0A0P6HK22   A0A0N7ZUY0   A0A0K8TLJ0   A0A0P5FNK2   A0A0P5SW38   A0A0P5CQ34   A0A0P5B598   A0A0P5KQY6   A0A0P5XWH8   A0A2J7Q956   U5EVM4   A0A164Q3S9   A0A0N8BD86   A0A1W4WRA7   A0A0P5FVV3   A0A0P5AD81   A0A0P5P3I4   A0A2J7Q954   A0A2J7Q952   A0A0P5HK78   A0A0N8DJA4   A0A1L8DYL4   A0A0N7ZZ61   A0A0P6DPQ1   A0A0P5ASC3   A0A1S4EJ38   A0A293LY25   A0A1B0C9M7   A0A0P6DMR6   A0A0T6AXY5   A0A1L8DYI5   A0A0P5MNB5   B0WI18   A0A1Q3FBD9   E9H317   R7UQ14   B8RJ37   A0A067R4R3   A0A182GVS0   Q17H10   A0A1E1XAL4   G3MNP3   A0A2R5L8S1   A0A131XLW9   A0A0C9S2F2   D6WWC6   R7URQ3   A0A224YGA0   A0A131YRV4   A0A023FJZ4   A0A1I8BPT8   A0A1B6FJH3   A0A1V9X114   L7M870   A0A2P6KS96   A0A2M4AEN2   A0A2M4AH39   V5GTA0   A0A131Y3K2   A0A1B6L7V5   A0A2M3Z628   A0A2H8TP71   A0A1B6GJP0   A0A2M4BV37   A0A212EV03   A0A1S3HUR3   A0A194QAI6   A0A2M4BVN9   W4XV06   T1DK38   A0A1X7VV03   A0A0T6AWW0   A0A2S2R4W1   A0A182M0W0   G0MGW4   A8XP12   A0A2G5SLD9   C1BQ93   A0A1S3H0U7   E0VKS4   B7QIS3   A0A0N7ZCX9   E2J7F6   W5JD80   A0A182SYZ0   A0A261CLY9  

PDB

4J0F     E-value=2.06433e-47,     Score=470

KEGG

100862760    K00022 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] | (RefSeq) 3HCD; 3-hydroxyacyl-CoA dehydrogenas

PATHWAY

00062    Fatty acid elongation - Bombyx mori (domestic silkworm)
00071    Fatty acid degradation - Bombyx mori (domestic silkworm)
00280    Valine, leucine and isoleucine degradation - Bombyx mori (domestic silkworm)
00310    Lysine degradation - Bombyx mori (domestic silkworm)
00380    Tryptophan metabolism - Bombyx mori (domestic silkworm)
00650    Butanoate metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)

GO

GO:0070403   GO:0006631   GO:0003857   GO:0016021   GO:0016491   GO:0006412   GO:0051539   GO:0009451   GO:0007155   GO:0051015   GO:0003779   GO:0055114  

Length:

120

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10138

Exp number, first 60 AAs:

0.0972

Total prob of N-in:

0.31266

outside

1  -  120

 

 

Pi

363.380287

Theta

204.086829

Tajima's D

2.15717

CLR

0.189661

CSRT

0.907704614769262

Interpretation

Uncertain