Gene

KWMTBOMO01060  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007408

Annotation

3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]

Location

Bomo_Chr3(+):1353426-1356000      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.427 Nuclear   Reliability : 1.121

CDS

ATGCAAAGTGCTATCAAGAATGTAACGGTTATTGGAGGTGGTCTAATGGGCTCCGGCATAGCCCAGGTATCTGCCCAAGCAGGACAGAATGTTACCCTGGTTGACGTCAGCAATGATGCTTTGGCTAAAGCCAAGAAGAGCATTGGCACAAACCTCAGCAGGGTCGCAAAGAAGATGTACAAAGATAATCCCCAAGAAGGAGAGAAATTTGTGAATGACTCACTAGGAAGGATTAATACTGCAACTGATGCAGCAGAGGCTTCCAAATCTGCTGATCTGGTTGTTGAGGCTATTGTTGAAAATATTGAAGTGAAGCATAAATTGTTTAAGCAGCTTGATGGCGTAGCTCCAAGTCACACTATTTTCGCATCAAACACGTCTTCTCTATCTATAAATGAAATTGCATCCGTCGTAAAAAGGAAAGACAAGTAG

Protein

MQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDK

Uniprot

H9JD11   E9NYX5   A0A2H1VFH8   A0A068FKF7   A0A2W1BJH9   A0A2A4J079   + More
A0A194QAC8   I4DL36   A0A194R582   S4P8W6   A0A0T6AXY5   A0A212EUW0   D6WWC6   A0A1Y1MXK4   A0A2S2R4W1   A0A2H8TP71   X1WJP5   C4WRK9   A0A067R4R3   R4V4D7   A0A2J7Q956   A0A2J7Q952   A0A0L7LKH8   A0A2P8XUD8   A0A2S2PDL5   A0A0T6AWW0   N6TPC9   A0A1W4WRA7   A0A087U399   V5GTA0   A0A1S3H0U7   A0A1W4WGI0   A0A2P6KS96   A0A1B6L7V5   A0A0P4YSW1   A0A0A9X4G2   H9JCW3   A0A2P8XUE6   A0A1B6HGT3   A0A0P5VHN6   A0A1B6JNA4   A0A0N8A0S4   A0A1B6J655   Q1HPZ9   R7UKI9   R4G8E3   A0A0P6FY44   A0A0N8EDM6   T1I645   A0A1B6EFT9   A0A164Q3S9   A0A0N7ZZ61   A0A0P6EYE7   A0A0N8DJA4   A0A0P6DPQ1   A0A0P5ASC3   A0A0P5P3I4   A0A1D1W5L3   A0A146LYP2   A0A1B6FJH3   A0A194QAI6   A0A1B6GJP0   A0A0P5HK78   R7URQ3   A0A0P5AVT6   A0A0K8TLJ0   A0A0P6DWD7   A0A0P5AD81   A0A0P6HK22   E9H317   Q7T0N8   R7UKY5   H3A1I3   A0A1B6G4Z2   A0A2W1BJF7   A0A1Y1L3D7   A0A2B4STZ8   E0VKS4   A0A2J8XQC5   A0A3M6TGA8   A0A2T7Q046   A0A212EV03   A0A2G8JGT9   B6RB36   A0A3P8QU67   A0A3B4FUP1   A0A3P9CW47   V4B5W7   A0A182M0W0   A0A0P5LJN5   H2PE29   Q5XGI2   A0A2J8XQM3   A0A1W4YT96   A0A2I3HVM5   H3DKZ1   I3LYG1   W5KSG6   A0A194RAE8   A0A2J8M2I1  

Pubmed

19121390    26385554    28756777    26354079    22651552    23622113    + More
22118469    18362917    19820115    28004739    24845553    26227816    29403074    23537049    25401762    23254933    27649274    26823975    26369729    21292972    27762356    9215903    20566863    30382153    29023486    25186727    20431018    15496914    25329095   

EMBL

BABH01027674    HQ833817    ADW77640.1    ODYU01002291    SOQ39585.1    KJ622104    + More
AID66694.1    KZ150083    PZC73824.1    NWSH01004652    PCG64812.1    KQ459232    KPJ02488.1    AK402004    BAM18626.1    KQ460685    KPJ12837.1    GAIX01004004    JAA88556.1    LJIG01022602    KRT79701.1    AGBW02012284    OWR45288.1    KQ971361    EFA08151.1    GEZM01020503    JAV89260.1    GGMS01015189    MBY84392.1    GFXV01003233    MBW15038.1    ABLF02028250    AK339814    BAH70529.1    KK852699    KDR18231.1    KC740894    AGM32718.1    NEVH01016943    PNF25118.1    PNF25115.1    JTDY01000766    KOB75952.1    PYGN01001331    PSN35623.1    GGMR01014659    MBY27278.1    KRT79696.1    APGK01056522    KB741277    KB632408    ENN71065.1    ERL95153.1    KK117947    KFM71838.1    GALX01003589    JAB64877.1    MWRG01006094    PRD29186.1    GEBQ01020252    JAT19725.1    GDIP01227643    JAI95758.1    GBHO01028717    GBHO01028715    GBRD01017621    GBRD01017620    JAG14887.1    JAG14889.1    JAG48206.1    PSN35625.1    GECU01033881    JAS73825.1    GDIP01099811    JAM03904.1    GECU01007363    JAT00344.1    GDIP01193745    JAJ29657.1    GECU01013059    JAS94647.1    DQ443253    ABF51342.1    AMQN01007361    KB300512    ELU06583.1    GAHY01001122    JAA76388.1    GDIQ01058965    JAN35772.1    GDIQ01037060    JAN57677.1    ACPB03013771    GEDC01026746    GEDC01001250    GEDC01000548    JAS10552.1    JAS36048.1    JAS36750.1    LRGB01002485    KZS07407.1    GDIP01198249    JAJ25153.1    GDIQ01056320    JAN38417.1    GDIP01028215    JAM75500.1    GDIQ01075154    JAN19583.1    GDIP01195152    JAJ28250.1    GDIQ01140592    JAL11134.1    BDGG01000016    GAV08103.1    GDHC01006873    JAQ11756.1    GECZ01019429    JAS50340.1    KPJ02487.1    GECZ01028505    GECZ01027315    GECZ01007115    JAS41264.1    JAS42454.1    JAS62654.1    GDIQ01249196    JAK02529.1    AMQN01007360    ELU06582.1    GDIP01193744    JAJ29658.1    GDAI01002582    JAI15021.1    GDIQ01075153    JAN19584.1    GDIP01200749    JAJ22653.1    GDIQ01017985    JAN76752.1    GL732587    EFX73881.1    BC056108    CM004466    AAH56108.1    OCT99841.1    AMQN01001130    AMQN01001131    AMQN01001132    KB300094    ELU07199.1    AFYH01221734    AFYH01221735    AFYH01221736    AFYH01221737    AFYH01221738    AFYH01221739    AFYH01221740    GECZ01012263    JAS57506.1    PZC73825.1    GEZM01068584    JAV66880.1    LSMT01000018    PFX32826.1    DS235250    EEB13980.1    NDHI03003363    PNJ84237.1    RCHS01003631    RMX40435.1    PZQS01000001    PVD39042.1    OWR45287.1    MRZV01002038    PIK34929.1    EF103382    ABO26640.1    KB200521    ESP01467.1    AXCM01004407    GDIQ01172669    JAK79056.1    ABGA01122417    ABGA01122418    ABGA01122419    ABGA01122420    ABGA01122421    PNJ84234.1    AAMC01090919    BC084457    CR760691    AAH84457.1    CAJ82220.1    PNJ84238.1    ADFV01176761    AGTP01110194    KPJ12836.1    NBAG03000271    PNI53726.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000007266    + More
UP000007819    UP000027135    UP000235965    UP000037510    UP000245037    UP000019118    UP000030742    UP000192223    UP000054359    UP000085678    UP000014760    UP000015103    UP000076858    UP000186922    UP000000305    UP000186698    UP000008672    UP000225706    UP000009046    UP000275408    UP000245119    UP000230750    UP000265100    UP000261460    UP000265160    UP000030746    UP000075883    UP000001595    UP000008143    UP000192224    UP000001073    UP000007303    UP000005215    UP000018467   

PRIDE

H9JD11    E9NYX5    H9JCW3    Q1HPZ9   

Pfam

PF02737   3HCDH_N        + More
PF00725   3HCDH
PF03770   IPK

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR006176   3-OHacyl-CoA_DH_NAD-bd       
IPR006180   3-OHacyl-CoA_DH_CS       
IPR008927   6-PGluconate_DH-like_C_sf       
IPR006108   3HC_DH_C       
IPR013328   6PGD_dom2       
IPR022694   3-OHacyl-CoA_DH       
IPR005522   IPK       
IPR038286   IPK_sf       

SUPFAM

SSF51735   SSF51735        + More
SSF48179   SSF48179       

Gene 3D

1.10.1040.10     1.10.510.50    

ProteinModelPortal

H9JD11   E9NYX5   A0A2H1VFH8   A0A068FKF7   A0A2W1BJH9   A0A2A4J079   + More
A0A194QAC8   I4DL36   A0A194R582   S4P8W6   A0A0T6AXY5   A0A212EUW0   D6WWC6   A0A1Y1MXK4   A0A2S2R4W1   A0A2H8TP71   X1WJP5   C4WRK9   A0A067R4R3   R4V4D7   A0A2J7Q956   A0A2J7Q952   A0A0L7LKH8   A0A2P8XUD8   A0A2S2PDL5   A0A0T6AWW0   N6TPC9   A0A1W4WRA7   A0A087U399   V5GTA0   A0A1S3H0U7   A0A1W4WGI0   A0A2P6KS96   A0A1B6L7V5   A0A0P4YSW1   A0A0A9X4G2   H9JCW3   A0A2P8XUE6   A0A1B6HGT3   A0A0P5VHN6   A0A1B6JNA4   A0A0N8A0S4   A0A1B6J655   Q1HPZ9   R7UKI9   R4G8E3   A0A0P6FY44   A0A0N8EDM6   T1I645   A0A1B6EFT9   A0A164Q3S9   A0A0N7ZZ61   A0A0P6EYE7   A0A0N8DJA4   A0A0P6DPQ1   A0A0P5ASC3   A0A0P5P3I4   A0A1D1W5L3   A0A146LYP2   A0A1B6FJH3   A0A194QAI6   A0A1B6GJP0   A0A0P5HK78   R7URQ3   A0A0P5AVT6   A0A0K8TLJ0   A0A0P6DWD7   A0A0P5AD81   A0A0P6HK22   E9H317   Q7T0N8   R7UKY5   H3A1I3   A0A1B6G4Z2   A0A2W1BJF7   A0A1Y1L3D7   A0A2B4STZ8   E0VKS4   A0A2J8XQC5   A0A3M6TGA8   A0A2T7Q046   A0A212EV03   A0A2G8JGT9   B6RB36   A0A3P8QU67   A0A3B4FUP1   A0A3P9CW47   V4B5W7   A0A182M0W0   A0A0P5LJN5   H2PE29   Q5XGI2   A0A2J8XQM3   A0A1W4YT96   A0A2I3HVM5   H3DKZ1   I3LYG1   W5KSG6   A0A194RAE8   A0A2J8M2I1  

PDB

3RQS     E-value=5.37149e-37,     Score=380

KEGG

100862760    K00022 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] | (RefSeq) 3HCD; 3-hydroxyacyl-CoA dehydrogenas

GO

GO:0006631   GO:0003857   GO:0070403   GO:0016021   GO:0120162   GO:0005739   GO:0005654   GO:0032958   GO:0016301   GO:0016491   GO:0006412   GO:0051539   GO:0009451   GO:0007155   GO:0051015   GO:0003779   GO:0055114  

Length:

143

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.00188

Exp number, first 60 AAs:

0.94591

Total prob of N-in:

0.52390

inside

1  -  143

 

 

Pi

279.600797

Theta

174.510425

Tajima's D

1.894438

CLR

0

CSRT

0.865056747162642

Interpretation

Uncertain