SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01059  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007360
Annotation
3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.734
 

Sequence

CDS
ATGAATAAAATTTTCGTTTTGACTCGGAAATTTTCGATTTCTACTTCTCAGAATGCGATTAAAACAGTTACAGTGATCGGCGGGGGCCTTATGGGCTCAGGAATCGCTCAGGTAACAGCGCAGGCTGGCCAGAATGTGACCATAGTAGATTTAGAGCCGGAAATACTCAATAAAGCCCAGAAAAGTATCCAAGCCAACTTAGGCAGGGTAGCCAAGAAACTGTACAAAGATGATCCAGGTAAAATTGAAGGCTTCGTCAAAGAATCCCTGGACAGGATCAAAATATCCACGAAAGTTGAAGACAGTGTGAATGCGGATTTGATTGTCGAAGCCATTGTTGAAAAGCTGGACATAAAGCAGGATCTATTCAACAAACTTGACAAGTTAGCACCTGAGCACACAATTCTAGCCACTAACACTTCATCAATATCAGTGAACGCTATCGGCTCGGGCATCAAAAGGAAAGATAAGTTCGGAGGCCTCCATTTCTTCAATCCAGTACCAGTGATGCGACTCCTGGAGGTTATAAAAAGCGATCACATTTCCGAGGACACTTACCAGGCCATGATGGAGTGGGGCAAGTCTGTGGGCAAGACTTGCATCACTTGTAAGGACACTCCAGGATTCGTTGTTAACAGGATCCTAGCTCCGTACAGTGCTGAAGCGTTGAGGATGTACGAAAGAGGAGATGCGTCAGCAGAAGATATAGACACCGCTATGAGATTAGGAGCGGGTTATCCGATGGGTCCCTTAGAACTGGCTGATTACACCGGTCTAGACTTGAAGAAATCCATTCTTGCCGTCATGCTTAAGGAAACAGGGAACCCGGTTTTCGAACCAATTGGGGTTCTAGATAAACTGGTGAAAGAGGGGAAGTACGGACGGAAAACCGGCGAGGGTATTTATAAATATAATAAATGA
Protein
MNKIFVLTRKFSISTSQNAIKTVTVIGGGLMGSGIAQVTAQAGQNVTIVDLEPEILNKAQKSIQANLGRVAKKLYKDDPGKIEGFVKESLDRIKISTKVEDSVNADLIVEAIVEKLDIKQDLFNKLDKLAPEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWGKSVGKTCITCKDTPGFVVNRILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKETGNPVFEPIGVLDKLVKEGKYGRKTGEGIYKYNK

Summary

EMBL
DQ443253    ABF51342.1    BABH01027674    KQ459232    KPJ02487.1    KZ150083    + More
PZC73825.1    AGBW02012284    OWR45287.1    KJ622105    AID66695.1    ODYU01009588    SOQ54126.1    AK402004    BAM18626.1    KQ460685    KPJ12837.1    KPJ02488.1    JTDY01000988    KOB75187.1    KJ622104    AID66694.1    ODYU01002291    SOQ39585.1    NWSH01004652    PCG64812.1    PZC73824.1    GAIX01004004    JAA88556.1    HQ833817    ADW77640.1    GALX01003589    JAB64877.1    LJIG01022602    KRT79696.1    KRT79701.1    APGK01056522    KB741277    KB632408    ENN71065.1    ERL95153.1    OWR45288.1    KQ971361    EFA08151.1    GDIQ01249196    JAK02529.1    LRGB01002485    KZS07407.1    GDIQ01140592    JAL11134.1    GFXV01003233    MBW15038.1    GDIP01028215    JAM75500.1    GGMS01015189    MBY84392.1    GL732587    EFX73881.1    GDHC01006873    JAQ11756.1    GDIP01198249    JAJ25153.1    GDIP01195152    JAJ28250.1    GDIQ01075154    JAN19583.1    ACPB03013771    ABLF02028250    JTDY01000766    KOB75952.1    DS235250    EEB13980.1    GDIQ01075153    JAN19584.1    AJWK01002493    AJWK01002494    GDIP01200749    JAJ22653.1    GGMR01014659    MBY27278.1    GDIQ01017985    JAN76752.1    GFDF01002567    JAV11517.1    NEVH01016943    PNF25115.1    GFDF01002566    JAV11518.1    GEZM01020503    JAV89260.1    KK852699    KDR18231.1    PYGN01001331    PSN35623.1    HP429374    ADN29874.1    GDAI01002582    JAI15021.1    JXUM01091695    JXUM01091696    KQ563935    KXJ73045.1    GDIQ01187769    JAK63956.1    PNF25118.1    MWRG01006094    PRD29186.1    GEBQ01020252    JAT19725.1    CVRI01000075    CRL08612.1    GDIQ01189171    JAK62554.1    CH477254    EAT45913.1    AK339814    BAH70529.1    GAHY01001122    JAA76388.1    GEDC01026746    GEDC01001250    GEDC01000548    JAS10552.1    JAS36048.1    JAS36750.1    GDIQ01172669    JAK79056.1    DS231941    EDS28100.1    GFDL01010175    JAV24870.1    GEZM01068584    JAV66880.1    GECZ01019429    JAS50340.1    AMQN01007360    AMQN01007361    KB300512    ELU06582.1    AXCM01004407    BDGG01000016    GAV08103.1    BT076772    ACO11196.1    GECZ01028505    GECZ01027315    GECZ01007115    JAS41264.1    JAS42454.1    JAS62654.1    KK854288    PTY14230.1    GAPW01002928    JAC10670.1    GANO01001813    JAB58058.1    PTY14232.1    LNIX01000001    OXA62128.1    BT077626    BT120867    ACO12050.1    ADD24507.1    GGFJ01007667    MBW56808.1    HACA01021282    CDW38643.1    GDIQ01056320    JAN38417.1    GGFJ01007670    MBW56811.1    GGFK01005914    MBW39235.1    GGFM01003193    MBW23944.1    GGFK01006785    MBW40106.1    ADMH02001498    ETN62302.1    GAMD01001141    JAB00450.1    RCHS01003631    RMX40435.1    EAAA01002320    MNPL01029600    OQR67194.1    GDIQ01058965    JAN35772.1    REGN01004459    RNA17414.1   
Pfam
PF02737   3HCDH_N        + More
PF00725   3HCDH
Interpro
IPR006176   3-OHacyl-CoA_DH_NAD-bd        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR008927   6-PGluconate_DH-like_C_sf       
IPR006108   3HC_DH_C       
IPR006180   3-OHacyl-CoA_DH_CS       
IPR022694   3-OHacyl-CoA_DH       
IPR013328   6PGD_dom2       
SUPFAM
SSF48179   SSF48179        + More
SSF51735   SSF51735       
Gene 3D
PDB
3RQS     E-value=3.39033e-84,     Score=793

Ontologies

Topology

Length:
306
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.1125
Exp number, first 60 AAs:
1.09603
Total prob of N-in:
0.12584
outside
1  -  306
 
 

Population Genetic Test Statistics

Pi
203.745112
Theta
184.726542
Tajima's D
0.658627
CLR
0.745779
CSRT
0.562921853907305
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 ILAPYSAEALR 100.00 2e-09
28556443 HPVFEPIPLLDK 100.00 2e-09
28556443 LLEVIK 100.00 4e-07
28556443 LGAGFPMGPFELADYTGLDTNK 100.00 4e-07
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVM 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVM 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVM 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVMR 100.00 3e-05
28556443 FGGLHFFNPVPVM 100.00 3e-05
28556443 ASNTSSLSINEIASVVK 100.00 3e-05
28556443 FGGLHFFNPVPVM 100.00 2e-04
28556443 FGGLHFFNPVPVM 100.00 2e-04
28556443 ETGNPVFEPIGVLDK 100.00 2e-04
28556443 FGGLHFFNPVPVM 100.00 2e-04
28556443 FGGLHFFNPVPVM 100.00 2e-04
28556443 DTPGFVVNR 100.00 2e-04
28556443 FGGLHFFNPVPVM 100.00 2e-04
28556443 FGGLHFFNPVPVM 100.00 2e-04
28556443 DTPGFVVNR 100.00 2e-04
28556443 FGGLHFFNPVPVM 100.00 2e-04
28556443 DTPGFVVNR 100.00 2e-04
28556443 LLEVVK 100.00 2e-04
28556443 ETGNPVFEPIGVLDK 100.00 3e-04
28556443 DTPGFVVNR 100.00 3e-04
28556443 SQLEGFNTSCLR 100.00 3e-04
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