Gene

KWMTBOMO01059  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007360

Annotation

3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]

Location

Bomo_Chr3(-):1337718-1350145      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.734

CDS

ATGAATAAAATTTTCGTTTTGACTCGGAAATTTTCGATTTCTACTTCTCAGAATGCGATTAAAACAGTTACAGTGATCGGCGGGGGCCTTATGGGCTCAGGAATCGCTCAGGTAACAGCGCAGGCTGGCCAGAATGTGACCATAGTAGATTTAGAGCCGGAAATACTCAATAAAGCCCAGAAAAGTATCCAAGCCAACTTAGGCAGGGTAGCCAAGAAACTGTACAAAGATGATCCAGGTAAAATTGAAGGCTTCGTCAAAGAATCCCTGGACAGGATCAAAATATCCACGAAAGTTGAAGACAGTGTGAATGCGGATTTGATTGTCGAAGCCATTGTTGAAAAGCTGGACATAAAGCAGGATCTATTCAACAAACTTGACAAGTTAGCACCTGAGCACACAATTCTAGCCACTAACACTTCATCAATATCAGTGAACGCTATCGGCTCGGGCATCAAAAGGAAAGATAAGTTCGGAGGCCTCCATTTCTTCAATCCAGTACCAGTGATGCGACTCCTGGAGGTTATAAAAAGCGATCACATTTCCGAGGACACTTACCAGGCCATGATGGAGTGGGGCAAGTCTGTGGGCAAGACTTGCATCACTTGTAAGGACACTCCAGGATTCGTTGTTAACAGGATCCTAGCTCCGTACAGTGCTGAAGCGTTGAGGATGTACGAAAGAGGAGATGCGTCAGCAGAAGATATAGACACCGCTATGAGATTAGGAGCGGGTTATCCGATGGGTCCCTTAGAACTGGCTGATTACACCGGTCTAGACTTGAAGAAATCCATTCTTGCCGTCATGCTTAAGGAAACAGGGAACCCGGTTTTCGAACCAATTGGGGTTCTAGATAAACTGGTGAAAGAGGGGAAGTACGGACGGAAAACCGGCGAGGGTATTTATAAATATAATAAATGA

Protein

MNKIFVLTRKFSISTSQNAIKTVTVIGGGLMGSGIAQVTAQAGQNVTIVDLEPEILNKAQKSIQANLGRVAKKLYKDDPGKIEGFVKESLDRIKISTKVEDSVNADLIVEAIVEKLDIKQDLFNKLDKLAPEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWGKSVGKTCITCKDTPGFVVNRILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKETGNPVFEPIGVLDKLVKEGKYGRKTGEGIYKYNK

Uniprot

Q1HPZ9   H9JCW3   A0A194QAI6   A0A2W1BJF7   A0A212EV03   A0A068FRH4   + More
A0A2H1WMB9   I4DL36   A0A194R582   A0A194QAC8   A0A0L7LIC7   A0A068FKF7   A0A2H1VFH8   A0A2A4J079   A0A2W1BJH9   S4P8W6   E9NYX5   V5GTA0   A0A0T6AWW0   A0A0T6AXY5   N6TPC9   A0A212EUW0   D6WWC6   A0A0P5HK78   A0A164Q3S9   A0A0P5P3I4   A0A2H8TP71   A0A0N8DJA4   A0A2S2R4W1   E9H317   A0A146LYP2   A0A0N7ZZ61   A0A0P5ASC3   A0A0P6DPQ1   T1I645   X1WJP5   A0A0L7LKH8   E0VKS4   A0A0P6DWD7   A0A1B0C9M7   A0A0P5AD81   A0A2S2PDL5   A0A0P6HK22   A0A1W4WRA7   A0A1L8DYL4   A0A2J7Q952   A0A1L8DYI5   A0A1Y1MXK4   A0A067R4R3   A0A2P8XUD8   E2J7F6   A0A1W4WGI0   A0A0K8TLJ0   A0A182GVS0   A0A0P5KQY6   A0A2J7Q956   A0A2P6KS96   A0A1B6L7V5   A0A1J1J9R0   A0A0N8BD86   Q17H10   C4WRK9   R4G8E3   A0A1B6EFT9   A0A0P5LJN5   B0WI18   A0A1S3H0U7   A0A1Q3FBD9   A0A1Y1L3D7   A0A1B6FJH3   R7URQ3   A0A182M0W0   A0A1S4EJ38   A0A1D1W5L3   C1BQ93   A0A1B6GJP0   A0A2R7W5G8   A0A023ENZ3   U5EVM4   A0A2R7W3G3   A0A226EY83   A0A182YC93   C1BSP7   A0A2M4BVN9   A0A0K2UK87   A0A0P6EYE7   A0A2M4BV37   A0A1I7YBR1   A0A2M4AEN2   A0A2M3Z628   A0A2M4AH39   W5JD80   A0A1I8BPT8   T1DK38   A0A3M6TGA8   A0A182TL87   F6U6L5   A0A1V9X114   A0A0P6FY44   A0A3M7R218  

Pubmed

19121390    26354079    28756777    22118469    26385554    22651552    + More
26227816    23622113    23537049    18362917    19820115    21292972    26823975    20566863    28004739    24845553    29403074    26369729    26483478    17510324    23254933    27649274    24945155    25244985    26392177    20920257    23761445    18809916    30382153    12481130    15114417    28327890    30375419   

EMBL

DQ443253    ABF51342.1    BABH01027674    KQ459232    KPJ02487.1    KZ150083    + More
PZC73825.1    AGBW02012284    OWR45287.1    KJ622105    AID66695.1    ODYU01009588    SOQ54126.1    AK402004    BAM18626.1    KQ460685    KPJ12837.1    KPJ02488.1    JTDY01000988    KOB75187.1    KJ622104    AID66694.1    ODYU01002291    SOQ39585.1    NWSH01004652    PCG64812.1    PZC73824.1    GAIX01004004    JAA88556.1    HQ833817    ADW77640.1    GALX01003589    JAB64877.1    LJIG01022602    KRT79696.1    KRT79701.1    APGK01056522    KB741277    KB632408    ENN71065.1    ERL95153.1    OWR45288.1    KQ971361    EFA08151.1    GDIQ01249196    JAK02529.1    LRGB01002485    KZS07407.1    GDIQ01140592    JAL11134.1    GFXV01003233    MBW15038.1    GDIP01028215    JAM75500.1    GGMS01015189    MBY84392.1    GL732587    EFX73881.1    GDHC01006873    JAQ11756.1    GDIP01198249    JAJ25153.1    GDIP01195152    JAJ28250.1    GDIQ01075154    JAN19583.1    ACPB03013771    ABLF02028250    JTDY01000766    KOB75952.1    DS235250    EEB13980.1    GDIQ01075153    JAN19584.1    AJWK01002493    AJWK01002494    GDIP01200749    JAJ22653.1    GGMR01014659    MBY27278.1    GDIQ01017985    JAN76752.1    GFDF01002567    JAV11517.1    NEVH01016943    PNF25115.1    GFDF01002566    JAV11518.1    GEZM01020503    JAV89260.1    KK852699    KDR18231.1    PYGN01001331    PSN35623.1    HP429374    ADN29874.1    GDAI01002582    JAI15021.1    JXUM01091695    JXUM01091696    KQ563935    KXJ73045.1    GDIQ01187769    JAK63956.1    PNF25118.1    MWRG01006094    PRD29186.1    GEBQ01020252    JAT19725.1    CVRI01000075    CRL08612.1    GDIQ01189171    JAK62554.1    CH477254    EAT45913.1    AK339814    BAH70529.1    GAHY01001122    JAA76388.1    GEDC01026746    GEDC01001250    GEDC01000548    JAS10552.1    JAS36048.1    JAS36750.1    GDIQ01172669    JAK79056.1    DS231941    EDS28100.1    GFDL01010175    JAV24870.1    GEZM01068584    JAV66880.1    GECZ01019429    JAS50340.1    AMQN01007360    AMQN01007361    KB300512    ELU06582.1    AXCM01004407    BDGG01000016    GAV08103.1    BT076772    ACO11196.1    GECZ01028505    GECZ01027315    GECZ01007115    JAS41264.1    JAS42454.1    JAS62654.1    KK854288    PTY14230.1    GAPW01002928    JAC10670.1    GANO01001813    JAB58058.1    PTY14232.1    LNIX01000001    OXA62128.1    BT077626    BT120867    ACO12050.1    ADD24507.1    GGFJ01007667    MBW56808.1    HACA01021282    CDW38643.1    GDIQ01056320    JAN38417.1    GGFJ01007670    MBW56811.1    GGFK01005914    MBW39235.1    GGFM01003193    MBW23944.1    GGFK01006785    MBW40106.1    ADMH02001498    ETN62302.1    GAMD01001141    JAB00450.1    RCHS01003631    RMX40435.1    EAAA01002320    MNPL01029600    OQR67194.1    GDIQ01058965    JAN35772.1    REGN01004459    RNA17414.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000053240    UP000037510    UP000218220    + More
UP000019118    UP000030742    UP000007266    UP000076858    UP000000305    UP000015103    UP000007819    UP000009046    UP000092461    UP000192223    UP000235965    UP000027135    UP000245037    UP000069940    UP000249989    UP000183832    UP000008820    UP000002320    UP000085678    UP000014760    UP000075883    UP000079169    UP000186922    UP000198287    UP000076408    UP000095287    UP000000673    UP000095281    UP000275408    UP000075902    UP000008144    UP000192247    UP000276133   

PRIDE

Q1HPZ9    H9JCW3    E9NYX5   

Pfam

PF02737   3HCDH_N        + More
PF00725   3HCDH

Interpro

IPR006176   3-OHacyl-CoA_DH_NAD-bd        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR008927   6-PGluconate_DH-like_C_sf       
IPR006108   3HC_DH_C       
IPR006180   3-OHacyl-CoA_DH_CS       
IPR022694   3-OHacyl-CoA_DH       
IPR013328   6PGD_dom2       

SUPFAM

SSF48179   SSF48179        + More
SSF51735   SSF51735       

Gene 3D

1.10.1040.10    

ProteinModelPortal

Q1HPZ9   H9JCW3   A0A194QAI6   A0A2W1BJF7   A0A212EV03   A0A068FRH4   + More
A0A2H1WMB9   I4DL36   A0A194R582   A0A194QAC8   A0A0L7LIC7   A0A068FKF7   A0A2H1VFH8   A0A2A4J079   A0A2W1BJH9   S4P8W6   E9NYX5   V5GTA0   A0A0T6AWW0   A0A0T6AXY5   N6TPC9   A0A212EUW0   D6WWC6   A0A0P5HK78   A0A164Q3S9   A0A0P5P3I4   A0A2H8TP71   A0A0N8DJA4   A0A2S2R4W1   E9H317   A0A146LYP2   A0A0N7ZZ61   A0A0P5ASC3   A0A0P6DPQ1   T1I645   X1WJP5   A0A0L7LKH8   E0VKS4   A0A0P6DWD7   A0A1B0C9M7   A0A0P5AD81   A0A2S2PDL5   A0A0P6HK22   A0A1W4WRA7   A0A1L8DYL4   A0A2J7Q952   A0A1L8DYI5   A0A1Y1MXK4   A0A067R4R3   A0A2P8XUD8   E2J7F6   A0A1W4WGI0   A0A0K8TLJ0   A0A182GVS0   A0A0P5KQY6   A0A2J7Q956   A0A2P6KS96   A0A1B6L7V5   A0A1J1J9R0   A0A0N8BD86   Q17H10   C4WRK9   R4G8E3   A0A1B6EFT9   A0A0P5LJN5   B0WI18   A0A1S3H0U7   A0A1Q3FBD9   A0A1Y1L3D7   A0A1B6FJH3   R7URQ3   A0A182M0W0   A0A1S4EJ38   A0A1D1W5L3   C1BQ93   A0A1B6GJP0   A0A2R7W5G8   A0A023ENZ3   U5EVM4   A0A2R7W3G3   A0A226EY83   A0A182YC93   C1BSP7   A0A2M4BVN9   A0A0K2UK87   A0A0P6EYE7   A0A2M4BV37   A0A1I7YBR1   A0A2M4AEN2   A0A2M3Z628   A0A2M4AH39   W5JD80   A0A1I8BPT8   T1DK38   A0A3M6TGA8   A0A182TL87   F6U6L5   A0A1V9X114   A0A0P6FY44   A0A3M7R218  

PDB

3RQS     E-value=3.39033e-84,     Score=793

KEGG

732951    K00022 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] | (RefSeq) 3-hydroxyacyl-CoA dehydrogenase

PATHWAY

00062    Fatty acid elongation - Bombyx mori (domestic silkworm)
00071    Fatty acid degradation - Bombyx mori (domestic silkworm)
00280    Valine, leucine and isoleucine degradation - Bombyx mori (domestic silkworm)
00310    Lysine degradation - Bombyx mori (domestic silkworm)
00380    Tryptophan metabolism - Bombyx mori (domestic silkworm)
00650    Butanoate metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)

GO

GO:0070403   GO:0006631   GO:0003857   GO:0016021   GO:0016491   GO:0006412   GO:0051539   GO:0009451   GO:0007155   GO:0051015   GO:0003779   GO:0055114  

Length:

306

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.1125

Exp number, first 60 AAs:

1.09603

Total prob of N-in:

0.12584

outside

1  -  306

 

 

Pi

203.745112

Theta

184.726542

Tajima's D

0.658627

CLR

0.745779

CSRT

0.562921853907305

Interpretation

Uncertain