Gene

KWMTBOMO01055  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007363

Annotation

ribosomal_protein_S26_[Bombyx_mori]

Location

Bomo_Chr3(-):1296603-1298225      View in EpiBrowser

Full name

40S ribosomal protein S26      

Location in the cell

Mitochondrial   Reliability : 1.879 Nuclear   Reliability : 2.172

CDS

ATGAAAGTTCTTTTCCGCCGTTCTTTGTTCACCGGATCGGAGGTTAGAAACATGACTCGTAAGCGCCGTAATGGAGGACGCGCCAAGCATGGACGTGGTCACGTTAAAGCCGTGAGATGCACAAACTGCGCGCGGTGCGTGCCAAAGGACAAGGCCATCAAAAAGTTCGTGATTAGGAACATCGTAGAAGCGGCGGCGGTCAGAGATATTAACGATGCCTCTGTATACCCAATGTTCCAGCTCCCTAAGTTATACGCTAAGCTCCACTACTGCGTGTCATGCGCCATCCACAGCAAAGTTGTCAGGAACAGATCGAAGAAAGACAGAAGAATCCGTACTCCTCCCAAGAGTAACTTCCCTAGGGACATGTCACGTCCACAGGCAGTGCAAAGGAAGTGA

Protein

MKVLFRRSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQRK

Subunit

Component of the 40S small ribosomal subunit.

Similarity

Belongs to the eukaryotic ribosomal protein eS26 family.

Keywords

Complete proteome   Cytoplasm   Endoplasmic reticulum   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  40S ribosomal protein S26

Uniprot

Q5UAL7   A0A0K8TFG8   S4NWI2   E7DZ10   D1LYL5   A0A194QAM4   + More
I4DM25   I4DIR7   Q962Q4   A0A2H1WMG1   Q6F480   A0A2W1BM93   A0A212EV01   A0A194R5P4   G0ZEC9   A0A0L7KQU6   A0A0L7L1W5   Q6EUX4   R4WCU8   A0A182UUM4   A0A182THN1   A0A182X070   A0A182KT98   A0A182HPK8   Q9GT45   A0A182RAI4   A0A182YC92   A0A182P1F3   A0A182WD32   A0A182K2T0   A0A182N3R2   A0A182QTD1   A0A084WIX9   T1DND9   A0A2M3ZF77   A0A2M3ZZ34   W5JE03   A0A182FTY0   A0A0C9R7M1   A0A2R7WG53   A3FK45   A0A182IQX3   A0A2S2QK21   A0A182MUX3   A0A2H8TCZ7   Q201Z2   A0A224Y0L6   A0A0P4VYH2   G3CJT1   A0A069DNZ2   G1K0C3   A0A2M4CUB5   Q1HQE4   U5EMF9   B0WI19   A0A1Q3F9S0   A6YPT3   A0A232F8D0   Q4LAZ6   A0A0N8ESA5   A0A1B6M0A8   A0A1B6JNA2   K7IQ19   A0A026WQN4   D1M7Z1   A0A0C9QD83   J3JUB1   D6WUZ4   A0A1B0G7D5   U5EK15   A0A2P8ZKP7   A0A0J7KDC1   A0A158NAY4   E2ARH0   A0A182GVR9   C6ZQK8   W8C393   E0VWU6   V5FZH6   A0A067QHT6   A0A2J7PDH9   D3TSD5   A0A1A9XZM0   A0A1B0B9Y6   A0A1A9ZV12   A0A1W4X0X3   A0A0L0CIN7   V9IKE6   A0A088AKL1   A0A3Q0ILX1   A0A3L8DP72   A0A1I8Q701   A0A1L8EF94   A0A1A9V6G8   A0A146LE33   Q56FE8   T1PK98   E2BEP1   A0A1A9WF24   A0A1B0DKV4  

Pubmed

19121390    23622113    26354079    22651552    14668217    28756777    + More
22118469    26227816    23691247    20966253    11005829    12364791    25244985    24438588    20920257    23761445    27129103    21058630    26334808    21736942    17204158    17510324    18207082    28648823    26999592    20075255    24508170    22516182    23537049    18362917    19820115    29403074    21347285    20798317    26483478    20496585    24495485    20566863    24845553    20353571    26108605    30249741    26823975    25315136   

EMBL

BABH01027669    AY769341    AAV34883.1    GBRD01001690    JAG64131.1    GAIX01014635    + More
JAA77925.1    HQ424713    ADT80657.1    GU084289    ACY95322.1    KQ459232    KPJ02484.1    AK402343    BAM18965.1    AK401185    BAM17807.1    AF400222    AAK92194.1    ODYU01009588    SOQ54122.1    AB180410    BAD26654.1    KZ150083    PZC73830.1    AGBW02012284    OWR45284.1    KQ460685    KPJ12834.1    JF265007    AEL28838.1    JTDY01007202    KOB65379.1    JTDY01003499    KOB69462.1    AJ783897    CAH04345.1    AK416999    BAN20214.1    APCN01003264    AF283269    AAAB01008986    AXCN02001102    ATLV01023952    KE525347    KFB50173.1    GAMD01002970    JAA98620.1    GGFM01006412    MBW27163.1    GGFK01000496    MBW33817.1    ADMH02001498    ETN62301.1    GBYB01012344    JAG82111.1    KK854778    PTY18644.1    EF382753    ABN54484.1    GGMS01008838    MBY78041.1    AXCM01004407    GFXV01000164    MBW11969.1    ABLF02026968    DQ413194    AK339893    ABD72662.1    BAH70595.1    GFTR01001934    JAW14492.1    GDKW01000919    JAI55676.1    HP639848    AEM97985.1    GBGD01003533    JAC85356.1    ACPB03018324    JO495004    GAHY01000920    AEL79234.1    JAA76590.1    GGFL01004732    MBW68910.1    DQ440500    CH477254    ABF18533.1    EAT45912.1    GANO01001049    JAB58822.1    DS231941    EDS28101.1    GFDL01010797    JAV24248.1    EF639094    ABR27979.1    NNAY01000707    OXU26862.1    AM040006    CAJ01871.1    GDUN01000010    JAN95909.1    GEBQ01010614    JAT29363.1    GECU01007069    JAT00638.1    KK107128    EZA58253.1    GU120415    ACY71265.1    GBYB01012343    JAG82110.1    APGK01018185    BT126824    KB740071    KB632286    AEE61786.1    ENN81689.1    ERL91455.1    KQ971357    EFA08341.1    CCAG010021559    GANO01001986    JAB57885.1    PYGN01000028    PSN57074.1    LBMM01009032    KMQ88448.1    ADTU01010497    ADTU01010498    GL442063    EFN63979.1    JXUM01091692    JXUM01091693    JXUM01091694    KQ563935    KXJ73044.1    EZ114809    ACU30862.1    GAMC01000133    JAC06423.1    DS235824    EEB17852.1    GALX01005371    JAB63095.1    KK853353    KDR08222.1    NEVH01026386    PNF14394.1    EZ424337    ADD20613.1    JXJN01010641    JRES01000340    KNC32115.1    JR051623    AEY61530.1    QOIP01000006    RLU22086.1    GFDG01001417    JAV17382.1    GDHC01012105    JAQ06524.1    AY961552    AAX62454.1    KA649222    AFP63851.1    GL447845    EFN85816.1    AJVK01016129   

Proteomes

UP000005204    UP000053268    UP000007151    UP000053240    UP000037510    UP000075903    + More
UP000075902    UP000076407    UP000075882    UP000075840    UP000007062    UP000075900    UP000076408    UP000075885    UP000075920    UP000075881    UP000075884    UP000075886    UP000030765    UP000000673    UP000069272    UP000075880    UP000075883    UP000007819    UP000015103    UP000008820    UP000002320    UP000215335    UP000002358    UP000053097    UP000019118    UP000030742    UP000007266    UP000092444    UP000245037    UP000036403    UP000005205    UP000000311    UP000069940    UP000249989    UP000009046    UP000027135    UP000235965    UP000092443    UP000092460    UP000092445    UP000192223    UP000037069    UP000005203    UP000079169    UP000279307    UP000095300    UP000078200    UP000095301    UP000008237    UP000091820    UP000092462   

PRIDE

Q5UAL7    Q9GT45   

Pfam

PF01283   Ribosomal_S26e

Interpro

IPR038551   Ribosomal_S26e_sf        + More
IPR000892   Ribosomal_S26e       
IPR013761   SAM/pointed_sf       

SUPFAM

SSF47769   SSF47769       

Gene 3D

3.30.1740.20    

ProteinModelPortal

Q5UAL7   A0A0K8TFG8   S4NWI2   E7DZ10   D1LYL5   A0A194QAM4   + More
I4DM25   I4DIR7   Q962Q4   A0A2H1WMG1   Q6F480   A0A2W1BM93   A0A212EV01   A0A194R5P4   G0ZEC9   A0A0L7KQU6   A0A0L7L1W5   Q6EUX4   R4WCU8   A0A182UUM4   A0A182THN1   A0A182X070   A0A182KT98   A0A182HPK8   Q9GT45   A0A182RAI4   A0A182YC92   A0A182P1F3   A0A182WD32   A0A182K2T0   A0A182N3R2   A0A182QTD1   A0A084WIX9   T1DND9   A0A2M3ZF77   A0A2M3ZZ34   W5JE03   A0A182FTY0   A0A0C9R7M1   A0A2R7WG53   A3FK45   A0A182IQX3   A0A2S2QK21   A0A182MUX3   A0A2H8TCZ7   Q201Z2   A0A224Y0L6   A0A0P4VYH2   G3CJT1   A0A069DNZ2   G1K0C3   A0A2M4CUB5   Q1HQE4   U5EMF9   B0WI19   A0A1Q3F9S0   A6YPT3   A0A232F8D0   Q4LAZ6   A0A0N8ESA5   A0A1B6M0A8   A0A1B6JNA2   K7IQ19   A0A026WQN4   D1M7Z1   A0A0C9QD83   J3JUB1   D6WUZ4   A0A1B0G7D5   U5EK15   A0A2P8ZKP7   A0A0J7KDC1   A0A158NAY4   E2ARH0   A0A182GVR9   C6ZQK8   W8C393   E0VWU6   V5FZH6   A0A067QHT6   A0A2J7PDH9   D3TSD5   A0A1A9XZM0   A0A1B0B9Y6   A0A1A9ZV12   A0A1W4X0X3   A0A0L0CIN7   V9IKE6   A0A088AKL1   A0A3Q0ILX1   A0A3L8DP72   A0A1I8Q701   A0A1L8EF94   A0A1A9V6G8   A0A146LE33   Q56FE8   T1PK98   E2BEP1   A0A1A9WF24   A0A1B0DKV4  

PDB

4V6W     E-value=3.68076e-37,     Score=381

KEGG

693066    K02976 small subunit ribosomal protein S26e | (RefSeq) RpS26; ribosomal protein S26

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0006412   GO:0003735   GO:0002181   GO:0003729   GO:0042788   GO:0022627   GO:0098556   GO:0005622   GO:0051539   GO:0009451   GO:0007155   GO:0051015   GO:0003779   GO:0016021  

PANTHER

PTHR12538  

Subcellular location

Cytoplasm   Detected on cytosolic polysomes (By similarity). Detected in ribosomes that are associated with the rough endoplasmic reticulum (By similarity).   With evidence from 2 publications.
Cytosol   Detected on cytosolic polysomes (By similarity). Detected in ribosomes that are associated with the rough endoplasmic reticulum (By similarity).   With evidence from 2 publications.
Rough endoplasmic reticulum   Detected on cytosolic polysomes (By similarity). Detected in ribosomes that are associated with the rough endoplasmic reticulum (By similarity).   With evidence from 2 publications.

Length:

132

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04394

Exp number, first 60 AAs:

9e-05

Total prob of N-in:

0.13199

outside

1  -  132

 

 

Pi

22.008566

Theta

20.082662

Tajima's D

0.568761

CLR

2.302664

CSRT

0.541422928853557

Interpretation

Uncertain