Gene

KWMTBOMO01053

Pre Gene Modal

BGIBMGA007364

Annotation

PREDICTED:_CDK5RAP1-like_protein_[Amyelois_transitella]

Location

Bomo_Chr3(-):1283829-1289505      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.284 Nuclear   Reliability : 2.073

CDS

ATGAATTTGAATGACACCGAAATAGTTTGGTCAATATTAAAAAATGAAGGTTTTGAGAAGACGGAAAACGAAGAAGACGCTGATGTTTTCCTAGTAATGACGTGCGCGATCCGGGAAGGAGCGGAAACTAAAATATGGCATCGTTTAGATCATTTACGAGGTTTTAAACGTAGAGCAATGAAAAATAAAAATAGGCCAGTGAAAATTGGTATTCTCGGCTGTATGGCTGAGAGATTGAAAGAGAAATTAATTGAGAAAGAGAAGTCTGTTGATGTTGTGGCAGGACCAGATAGCTACAGAGATCTTCCACGGCTACTGGCCCTGACTGATAATGGGCAGACAGCTGTCAATGTCCTCCTGTCATTAGACGAGACATATGCTGATGTGGTGCCGGTCAGATTAAACCAGGATTGCATTTCGGCCTTTATTTCTATAATGCGCGGATGCGACAACATGTGCACATACTGCATAGTGCCATTCACGAGAGGCAGAGAAAGGTCCAGGCCGGTCGACTCCATTGTGGAGGAGGTTCGGCAGCTTGCTGACCAGGGAGTCAAGGAGGTCACACTGTTGGGTCAAAATGTGAATAGTTACAGAGACACTTCCAAGGCTACTGAAAAAACTAATACCAGTGTTGCTAAAGGGTTCAGAACAGTGTACAAGAATAAGAAAGGCGGTTTAAGGTTTGCTGATCTGCTGGATAAAGTGTCCTCTGTTGATCCTGAAATGCGAATCAGGTTCACTGCCGCACACCCCAAAGACTTTCCAGATGAGGTGCTACAGATAATATCGGAGCGTCCGAACATATGCAAGATGTTGCATCTGCCAGCGCAGTCCGGCTCCACCGCGGTGCTGGACCGGATGAGGAGAGGGTACACCAGGGAAGCCTACTTGGAACTGGTTGACCACGTCAAGAGCTGCATACCGGCCGTCGGTCTGTCCACGGATATGATCTGTGGGTTCTGCGGAGAAACCGAAGAGGAGTTTGAGGAGACGCTGTCTCTGATGGAGCTCGTGGATTACAACACGGCGTTTTTGTTTCCGTACAGCATGAGGGAGAAAACAACAGCGTACAGACGGTATGAGGACGACGTGCCTGATCACGTTAAGAAGGAAAGACACGGCCGCCTGTTGGAGGTATACCGACGGAAGAGTCAGACGTTGAACGAAGCTGAAGTTGGCAACACTCACTTAGTGCTCGTCGAGGGTGTAGTAAAAAAAACCGGGCAGCTATACGGCAGGAACGAGGTCTACATGAAGGTCGTGTTTGATGTGGGGGAGATTATGAGCGATGATGGGGGGAAGAGGGCCATGAGAATAGGGGACTACGTTGCCGTGAAGATTGTGGGGGCAAAATCTTCTGTTCTGAGCGGAGTGCCGCTATGCCATACTAGTTTATCGGAATTTTATAGAGAACGAATTTGGGGGGAAAACAGTATTGAATTGTGA

Protein

MNLNDTEIVWSILKNEGFEKTENEEDADVFLVMTCAIREGAETKIWHRLDHLRGFKRRAMKNKNRPVKIGILGCMAERLKEKLIEKEKSVDVVAGPDSYRDLPRLLALTDNGQTAVNVLLSLDETYADVVPVRLNQDCISAFISIMRGCDNMCTYCIVPFTRGRERSRPVDSIVEEVRQLADQGVKEVTLLGQNVNSYRDTSKATEKTNTSVAKGFRTVYKNKKGGLRFADLLDKVSSVDPEMRIRFTAAHPKDFPDEVLQIISERPNICKMLHLPAQSGSTAVLDRMRRGYTREAYLELVDHVKSCIPAVGLSTDMICGFCGETEEEFEETLSLMELVDYNTAFLFPYSMREKTTAYRRYEDDVPDHVKKERHGRLLEVYRRKSQTLNEAEVGNTHLVLVEGVVKKTGQLYGRNEVYMKVVFDVGEIMSDDGGKRAMRIGDYVAVKIVGAKSSVLSGVPLCHTSLSEFYRERIWGENSIEL

Uniprot

H9JCW7   A0A2H1VFF5   A0A2W1BFH4   A0A2A4IVY9   A0A194QAI1   A0A212EUW6   + More
A0A2A4IZW4   A0A0T6B215   A0A2J7QG20   A0A1Y1MFJ4   A0A1W4WR80   N6SZB8   U4TUK6   D6WVN1   A0A336M528   A0A0C9QXS1   A0A158NGM9   F4WZV7   A0A0N7Z8M0   A0A182KT86   A0A182HPL1   Q7PV81   E2ACC6   A0A026WZF1   A0A182X067   A0A146LY54   C3ZNQ8   A0A1B6FBU2   A0A182P1F6   A0A1B6CD53   A0A067R1J9   A0A1B6LHT2   A0A069DUC4   A0A0A9Z0D3   A0A147BSU0   G3MLM2   A0A023GNI0   A0A146KQN1   A0A131XWT3   A0A182JZV0   A0A182M365   A0A091VNN9   A0A1E1XAM7   A0A2H8TIZ8   R7TUC4   Q17H14   A0A091JBZ6   A0A224XN00   A0A2A3ED93   A0A088AKM6   A0A182FTY3   A0A131YKB2   A0A182T2W9   W5JGK2   A0A2P2I4J0   A0A224YUX9   A0A094LS88   A0A093NN99   A0A131XLS1   W4XUT0   F1NZV3   A0A154PGN0   L7M577   A0A087R2N0   A0A2S2NZI5   W8AWW6   A0A0L7QQB7   A0A182GM39   A0A1U8CLU0   X1WLV6   G3VNV9   G3VNV8   H3AXJ9   A0A182NCA1   G1N6X0   A0A091GTM2   A0A091M846   A0A2U4CLS6   A0A2Y9T665   A0A2K5EYN9   A0A2K6V096   A0A182QFG1   A0A2I0TLN8   V9KLA7   A0A341B790   A0A293LG98   A0A2K5RFE2   A0A384B221   A0A2K5KDH5   A0A2K6EDI1   A0A093CWF2   G3HAM1   A0A0M3QYI3   G1M322   A0A1W4UKE4   A0A0A0B3W0   A0A340YFD1   A0A2Y9INU8   A0A151MM96   A0A2J8VIT1  

Pubmed

19121390    28756777    26354079    22118469    28004739    23537049    + More
18362917    19820115    21347285    21719571    27129103    20966253    12364791    20798317    24508170    26823975    18563158    24845553    26334808    25401762    29652888    22216098    28503490    23254933    17510324    26830274    20920257    23761445    28797301    28049606    15592404    25576852    24495485    26483478    28071753    21709235    9215903    20838655    24402279    21804562    20010809    22293439   

EMBL

BABH01027669    ODYU01002291    SOQ39583.1    KZ150083    PZC73822.1    NWSH01005764    + More
PCG63965.1    KQ459232    KPJ02482.1    AGBW02012284    OWR45282.1    NWSH01004652    PCG64814.1    LJIG01016260    KRT81134.1    NEVH01014836    PNF27511.1    GEZM01032402    JAV84599.1    APGK01058731    KB741291    ENN70573.1    KB631579    ERL84447.1    KQ971357    EFA08272.1    UFQT01000449    SSX24461.1    GBYB01000490    JAG70257.1    ADTU01015146    GL888480    EGI60247.1    GDKW01002971    JAI53624.1    APCN01003265    AAAB01008986    EAA00300.4    GL438491    EFN68916.1    KK107063    EZA61198.1    GDHC01007339    JAQ11290.1    GG666653    EEN45790.1    GECZ01022077    JAS47692.1    GEDC01025909    JAS11389.1    KK852992    KDR12757.1    GEBQ01016712    JAT23265.1    GBGD01001156    JAC87733.1    GBHO01008770    GBHO01006796    GBRD01008062    GBRD01008061    GBRD01008060    JAG34834.1    JAG36808.1    JAG57759.1    GEGO01001584    JAR93820.1    JO842773    AEO34390.1    GBBM01000705    JAC34713.1    GDHC01020644    GDHC01015463    JAP97984.1    JAQ03166.1    GEFM01004073    JAP71723.1    AXCM01006018    KL411195    KFR04295.1    GFAC01002881    JAT96307.1    GFXV01002176    MBW13981.1    AMQN01002504    KB309374    ELT94625.1    CH477254    EAT45909.1    KK501721    KFP17255.1    GFTR01006903    JAW09523.1    KZ288285    PBC29454.1    GEDV01009677    JAP78880.1    ADMH02001571    ETN62040.1    IACF01003334    LAB68953.1    GFPF01006628    MAA17774.1    KL362626    KFZ66479.1    KL224763    KFW63475.1    GEFH01001945    JAP66636.1    AAGJ04101209    AADN05000479    KQ434889    KZC10330.1    GACK01006790    JAA58244.1    KL226064    KFM07734.1    GGMR01009497    MBY22116.1    GAMC01013125    JAB93430.1    KQ414792    KOC60749.1    JXUM01073623    KQ562786    KXJ75133.1    ABLF02025798    AEFK01041551    AEFK01041552    AEFK01041553    AEFK01041554    AEFK01041555    AFYH01139072    AFYH01139073    KL447823    KFO77477.1    KK524644    KFP67661.1    AXCN02001762    KZ508857    PKU34724.1    JW866346    AFO98863.1    GFWV01003033    MAA27763.1    KL249847    KFV17229.1    JH000254    EGW02739.1    CP012526    ALC47669.1    ACTA01138844    ACTA01146843    ACTA01154842    KL884773    KGL99980.1    AKHW03005690    KYO25646.1    NDHI03003419    PNJ57432.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000235965    UP000192223    + More
UP000019118    UP000030742    UP000007266    UP000005205    UP000007755    UP000075882    UP000075840    UP000007062    UP000000311    UP000053097    UP000076407    UP000001554    UP000075885    UP000027135    UP000075881    UP000075883    UP000053283    UP000014760    UP000008820    UP000053119    UP000242457    UP000005203    UP000069272    UP000075901    UP000000673    UP000054081    UP000007110    UP000000539    UP000076502    UP000053286    UP000053825    UP000069940    UP000249989    UP000189706    UP000007819    UP000007648    UP000008672    UP000075884    UP000001645    UP000053760    UP000245320    UP000248484    UP000233020    UP000233220    UP000075886    UP000252040    UP000233040    UP000233080    UP000233120    UP000001075    UP000092553    UP000008912    UP000192221    UP000053858    UP000265300    UP000248482    UP000050525   

PRIDE

H9JCW7    G3HAM1   

Pfam

PF00919   UPF0004        + More
PF04055   Radical_SAM
PF01938   TRAM
PF02902   Peptidase_C48

Interpro

IPR007197   rSAM        + More
IPR020612   Methylthiotransferase_CS       
IPR038135   Methylthiotransferase_N_sf       
IPR023404   rSAM_horseshoe       
IPR013848   Methylthiotransferase_N       
IPR002792   TRAM_dom       
IPR005839   Methylthiotransferase       
IPR006638   Elp3/MiaB/NifB       
IPR006463   MiaB_methiolase       
IPR003653   Peptidase_C48_C       
IPR038765   Papain-like_cys_pep_sf       

SUPFAM

SSF54001   SSF54001       

Gene 3D

3.40.50.12160     3.80.30.20    

ProteinModelPortal

H9JCW7   A0A2H1VFF5   A0A2W1BFH4   A0A2A4IVY9   A0A194QAI1   A0A212EUW6   + More
A0A2A4IZW4   A0A0T6B215   A0A2J7QG20   A0A1Y1MFJ4   A0A1W4WR80   N6SZB8   U4TUK6   D6WVN1   A0A336M528   A0A0C9QXS1   A0A158NGM9   F4WZV7   A0A0N7Z8M0   A0A182KT86   A0A182HPL1   Q7PV81   E2ACC6   A0A026WZF1   A0A182X067   A0A146LY54   C3ZNQ8   A0A1B6FBU2   A0A182P1F6   A0A1B6CD53   A0A067R1J9   A0A1B6LHT2   A0A069DUC4   A0A0A9Z0D3   A0A147BSU0   G3MLM2   A0A023GNI0   A0A146KQN1   A0A131XWT3   A0A182JZV0   A0A182M365   A0A091VNN9   A0A1E1XAM7   A0A2H8TIZ8   R7TUC4   Q17H14   A0A091JBZ6   A0A224XN00   A0A2A3ED93   A0A088AKM6   A0A182FTY3   A0A131YKB2   A0A182T2W9   W5JGK2   A0A2P2I4J0   A0A224YUX9   A0A094LS88   A0A093NN99   A0A131XLS1   W4XUT0   F1NZV3   A0A154PGN0   L7M577   A0A087R2N0   A0A2S2NZI5   W8AWW6   A0A0L7QQB7   A0A182GM39   A0A1U8CLU0   X1WLV6   G3VNV9   G3VNV8   H3AXJ9   A0A182NCA1   G1N6X0   A0A091GTM2   A0A091M846   A0A2U4CLS6   A0A2Y9T665   A0A2K5EYN9   A0A2K6V096   A0A182QFG1   A0A2I0TLN8   V9KLA7   A0A341B790   A0A293LG98   A0A2K5RFE2   A0A384B221   A0A2K5KDH5   A0A2K6EDI1   A0A093CWF2   G3HAM1   A0A0M3QYI3   G1M322   A0A1W4UKE4   A0A0A0B3W0   A0A340YFD1   A0A2Y9INU8   A0A151MM96   A0A2J8VIT1  

PDB

4JC0     E-value=3.21841e-20,     Score=243

KEGG

101740490    no KO assigned | (RefSeq) CDK5 regulatory subunit-associated protein 1

GO

GO:0016740   GO:0006400   GO:0051539   GO:0008234   GO:0045736   GO:0005739   GO:0016021   GO:0035597   GO:0070900   GO:0070131   GO:0045903   GO:0003824   GO:0051536   GO:0043412   GO:0009451   GO:0007155   GO:0051015   GO:0003779  

Length:

482

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01209

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00352

outside

1  -  482

 

 

Pi

58.633612

Theta

150.123051

Tajima's D

-1.253894

CLR

3.404987

CSRT

0.0954452277386131

Interpretation

Uncertain