Silkworm Genome Informatics Database

Gene

KWMTBOMO01050 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007401

Annotation

Nucleolar_pre-ribosomal-associated_protein_1_[Operophtera_brumata]

Location

Bomo_Chr3(+):1150936-1158235 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.988

CDS

ATGGGTAAACGTAAATATGAAAATGATAAAAATACATCCCAACAAAATGACGACTTAACTACCGCGGAAATCGAAGTAAATAAGGGCGAAAATGAACAAACTCACAACGAAGACAAAAACACACAGATTCCATCGAAACGGAATAGAGTTGGAGGATTCGACGTTAAACATTTCAGAAAAGAACTTACCGCGAAACTAGGACATAGTACGGCTCTAACTCAGTTCTTGCAAGTCTGCTTGAACCCCGATAATGAAGTTGACTACCTACTGGAATACCTTAAGGCTGGTGGTAATTCCCACGAAATTCTGCGGCAGATCACTCAGGATAACAAAAAGAACCTCTCATTGGCCACACCAGTCTTCCATCTATTTCACCTTATCATTCTCAAAGTACAATCATCATTGCCACACATGATCTCTATCACAGAAGAAGCCTGTCGATATTTTCTTAACACCTTCATGTCAACGGTTGAGATCATGATCAGTGAGAATTCTGGTCCTCGGCATCGAAAGATAGTACTGAAGCTATTAACATCAATGGTGACTTTAAATCCAGATTTAGGAATTGAAGTATTAAATCAAGCTCCACTGACACCTAAGCATTTACAGCACATAGTTGACAAGTCTAATTATAAAGAAAAAGACAATGTTAGAACTTCATTCCTACATTTGGTGACGTCATTCCTAGTCGATGGACATTTGTTATTAACTAAGGCATTGTTAGAAAAACAAGGCCTTTTAGGTATGGTTATACCTGGCTTAGTGCATGATGAACCAGAGGCAGTGCTAATGTTCCTAAATATTCTCAAAAAGAATGTAATATACAATAGCTTTATATCTAAAAGCTTGAAACTAAAGACTTTCAGCCATCAAGTCCTCCATAATATGTTCAAAGTCTTTAGTTGGAAAGGACCTCCAGAATTAAGTAATACAGTTAAAAATGAAGTACGGAGTGAAATTATTAGTCTGCTTTCAGATCTAATACTGACTTTGTTCACTTCACATCGTTTTGGCTTGTATTTCATTGATACATCACTAGGCACAGCCGAAGCCAACAAGAATCAGAATCTGTACAAAGCATTGCTCTCATTAAAAAGACCTTGGGAGAATGAAGATGAGGGCAATGTTATTTTAGATATTGTTACCAGGTGTCCAGATTTGCACAGAGCCATTGTTAATATTATTGAACAAAGTTTCGAACCCCAGCATTCGCCACTATGGGAAAGAACTTTGAATTTCACTATTAAATTGTTAAATAGACTGAACCCCGAAGAAATGGTCCCTAGAATGAATAACCTAAACAATAGTCAGGTTGCAAATTTTGTACGTTTTGTTACTCTGCCTGTACCACTACTGAAGTTTATACAAATAAATCTAGGAAAAGACCACACTGTGTCCATATACTGTGTGAAAGTTTTAGTAAAAATGTTACAAACTTTAAAACGCTATGTACAAATCTTGGAATTAAGGAGTCCATCTCAAGTCATTGATTTGAAAAACAAGTTAGAATATTTCTTTCCGAAGCATTTGCCTGTGCCTGGGGTGATCGTAAAAATCATTGATGATGTAATAAATGATCAAAACGATATTGAAAAAACGCAAGATTATAAGCTGCCCAAGATCAGTGATGTTGATGCCTTAATATTTCTTATAGATTTACTTCTATGTTATAATGACATACATCCAACATTTTTTGAAACCATTGAGGGCACTATAGATATGAACAAGATACTAGATTATTCCACCGAACTTCATGAAGATACTGCACTACTAAAGTTCAAAGTCGTATCGCTATGGCTAACTTTAGATAATTCTGCTATTTCATTGAAAAATCCAATGTTTAAAGACTTGTTCTTAATAATGCTTGGTGTATTTATGAGCGATAGCAATACTTGGATTGAAGCAAAAGATACACTGAAAATGTTTTTAAAGAATACTGCGATATTTGAAGCAGACGAAGATGAAATTCATATATTACTTTACACTCTTCGCCATGCAAGAGTCAACCCTCCATCTTTAATTGGGGATATCATAGAATATGTTCTCGAAAAACTAACTGATCTAACAGAGTATGTTAGGAATCAACTTGTCCATTTTGAGATCTGCGATGAAAACAGTGCAGGTAGCTTAGAAAAACTGTTTAATGATTTGATGCACAACCGGAATACAGAAGACAGTGTGTTCTTAGAAAGCAAAATTCCTTCGCCATTTATAGTTGGGTGTATCCAATACATACATCTGAAGAAAGATATTAAGAAAAATTTAAAGCAATTTCTATCGCTTTATATCGCAAATCTACTTCACAGTAATTATTCACCAGAAATGACTGAGGTTTTGATTGGCGATTCTAAATTGGATGTCAGGCATTACGTTGCCAGTTGGATTGGGCAACCAGTGCCATTACCGGATTCAATCTCACAGGATAATGTATTAAAGTGCATCTCAGAATCTGTATTTGACTGCAATAATGATGTTTCTCTAAAAGATATTTTCACATTTTTTGTAGAAACAGAATGTGACGAATATGATTTTAAAATAAACAATGTGAATTATAAATTAGACATGACTGTCAATGTTGATAGCTCTGAATTATTAATTTGGTCCAAATATTTGATTTATTGCACAGTACGATTGACCAATATAGGACAATTGACCTCTGAGCAGCAACAGAAAATATCAGATTACTTTCAATGCATAATAGCTATTGGAAGAAAACACCACATGATCGATATTTGTCGAACAATAATTTTGACTCTATTCAAAAGTCCACAAGTTTTAAAAATCTATAAGCTATTAGACCTGAATAAAGGCGAAGCAAGCTTACTGGCAACGAAATTTATGTTAAAAATTATAATGGAACACAGAGATATAATAAGTTATTTGAATGAAAAAAATAAGATACTCAAGTCATACCAGCAAAAAAACTACAATGAAATTGTGAAAGCCCTTGTGAAAATTAATAAAAGAAAGAATATTGTCACTGCTCATACAATGGACGTCTTGGAAGTTGTAGGGTTAAGTAAAGGAGACGATATCCGAGTACTTAACGAAATATTTAACATTGGTGTTGAATGTTTTGTGCGCGATGACAAAGAGCCAAGTTTAGCTCTCGAACTAATTAGATATATGATTGAAAAGTACTCCAAGATAGTAGACAGTGACATCGAACCAAACATTTTGAAGAAATGCATGAACTTATACATGGAGTTATTAACGAACAAGGAATTATCACCGAATTTGAGTAATCTTGAACTGGCATTGATAGAATATTTAAGCAACAAACCGAATCAAGTCACGAATTTACCCGATGAGATATTTAAAAAGATATTTGAAATAAATAACTTTAGGAAGACAACTTCTGCTCTCGCTGTTATAATGCTAAAATATAATATTAAATTCTGTAAGATATTCAAAGAAGAAATTGTTAAACCAGATGTTTTGGCTCAAAGAGAACTTACTTTGCCTTTAGGAACTGGACTTTTAGAACATAAGCTATTTTTAAATGAAAACAAAGATCTCTTGAAGACAATATACGAGGAATACAAATCTAACATAGTTAAGTTTTTGGAAAAGCCCCACAAGGCTGGACAAATATATGTGACGAATTGGATGTTCATAAGAAAACTGATTTTAGAGTGTATGCAAAAGGAAGAATGCGAAAATTTATTTAACAAAATCCACAAATTCGAAATATTAGAGATCAGTCACAATCATTTATTTCAGACGGTATTTTTAAAACTATGCATTTCTGAAGGAACAAAAAAGAAGTCTATATTGATTAATTATTTCCTTTCAATGTTAAATTTAACAATAATTTCTTTGAAGGAAGCGAAAGACGAAGCAGGACTAAACCAATTAGTAAATAATATAAATACGATTTGTGAAATAAGCAGACACATCGATGATTTTGAGGTTGAAAATAAAGAAGAATTCAAAAAGATTACAGAAACAACAACCTGGCAGAACTTCTGTAAGAATGTCTTGAAAGATTCCCTCAAAATTAGAACGGCCACTGAGAGTAACGCTATAGGCGCCAAATTAATACTATTATTGACGAACTTGGTCAAACTCTTTTATCCAATAGACCATGAAGACATAACAACACTATTCGACATGGTCACATCACATTCCGAGTTCTTGAATGTGATGCTCAGTCATTACAGCACGGCGATAAAATCAAGATTGATATATTTCTTGTACGTTTTGATAACAAAAAAGAAATCGGTGATGAAAATACAACAGATACCGGTGTATTTGAGTGCATACCACGCGACAAGGTCTCCGTGTGATAGGCTGATTCTTAGTATACTGAATTATTTCGAGAGCAACGGTCTACCTGTGAATGAATACAAACCTTACGTTTGGGGGGAATCGGCTGCCAACTATTACGCCGTGAGGAAAAACAGATCTGCTTCCCTGTGGGCGCATCCGACACCAAATCAAGTATTGAATTTGTTCGAGAAAGAAATTATTGAGAGGACAATTAAAAAATTTCCTGTCACACAAAAAATGGATTATCATTACGAGTTGCCCTCGAATCTGGATGTAGACGATGCGAATAGTTCTGTCAGAAATATTATTGACGATTTCTTCAAGAAGACAGTTCTGGAATCTGTCCAGATTAAAGATACAGAAGGAGCAGTAAATTCTTTGTTGATCAAAGGTAAATTTGAGAAGCTGGTCGAAACGATGAAGAGAAGAGACGTAGTTGCAACCTCCCATCAGGACGACGATGAGTCTATATACGACCCTCTGTTCGTATTTCCTCTCCTGAGTCACCTCTTGGCTCCGGGTTCGGTGGCGTCTTGTTTCAAGATGTTAAGGACCGGTTTGTTGTCAGTCCCCGTAGTGGCACTGAGCTCTCTCTGTCCGCTGACGAGGGCGGCTGCCTACCACGTGCTCCATCGGTTCTACCTGCTCTTGGAGACTGAGACGAGACACAGGAACGACAAACTGTTTCTCAACGATTTCATCAACACCCTCCGGAAGAGCCTCGCCACAGCCATCACCAGTTCCGACGAAGACTCTGATGAGCTAAACGGCGTGAAGAACCCGAGAGTGCCGGCGGTGGACGCCCTTTATCTGGCCAGAGGACTGATGGTCTCCACGGCGCCTCTCGACCCGCTCTACAAACCGATAAACAACTTCCTGATCGCGAAACAGCTTGTAGATTTTACTGTGGTACCGGACTTTTTAAGTCTCTTCCACGACAGCGACGTCGAGTCCGTAGAAAGGAGAGTCTGGATCTTAGACACCATCATGCACGGCGTCAAGACAATGACCGATGTCAATGTCATATTCAAAACGATGTGCCTGAAGATGATCATGGATTTCTACACGTCCGTGTTAAGTGAGAAAAAAGTGAAAGTGAAAATTATAAATGTTCTAAGTTCGATAGTGAGTGTCCCTAAATCGTTTGAGATATTAGTCGAAGGACACGGCCTAATATCCTGGCTGCATTCGGTTGTGAAGACCGTGAATAAGGAAGATGGTGTATTAGTGACGGCAATATTTGTTTTGATTAAAAACATGTTGTACAGTCTGAGTGTTAATGGCTTGGTGAAAAGTCAAGCGATGCGGAATAAAAATGTAAAAATATACGAAGTTGCGGGTATTAAGGGAAACAGGGAGCTAGAATTTGAAATACTGATCCTAGTGCAAGATTTACTGAAAAAAAACGATGCCCTTGAAAGGCAAGACGTAGCCGAATATTTGAGTTTGTACAGAATGTTCTCGAGGATAACTATAAAGTTCGTTAATAAGAAACATGTTATTAATCTTGTCAATAAAATGATGGAGATCTTGAAGGATAGTGAGAGTGTTAAATTGTTGTCTAAAGCGTTGTTGTCGAACGATGGTTCCGTGTTGAGAAGCAAAGTGTTCAATGATGCTGACGATAGTTTGATAAACGATTTGTATTACGTTGTACAATGTTTTGTTTGTTGA

Protein

MGKRKYENDKNTSQQNDDLTTAEIEVNKGENEQTHNEDKNTQIPSKRNRVGGFDVKHFRKELTAKLGHSTALTQFLQVCLNPDNEVDYLLEYLKAGGNSHEILRQITQDNKKNLSLATPVFHLFHLIILKVQSSLPHMISITEEACRYFLNTFMSTVEIMISENSGPRHRKIVLKLLTSMVTLNPDLGIEVLNQAPLTPKHLQHIVDKSNYKEKDNVRTSFLHLVTSFLVDGHLLLTKALLEKQGLLGMVIPGLVHDEPEAVLMFLNILKKNVIYNSFISKSLKLKTFSHQVLHNMFKVFSWKGPPELSNTVKNEVRSEIISLLSDLILTLFTSHRFGLYFIDTSLGTAEANKNQNLYKALLSLKRPWENEDEGNVILDIVTRCPDLHRAIVNIIEQSFEPQHSPLWERTLNFTIKLLNRLNPEEMVPRMNNLNNSQVANFVRFVTLPVPLLKFIQINLGKDHTVSIYCVKVLVKMLQTLKRYVQILELRSPSQVIDLKNKLEYFFPKHLPVPGVIVKIIDDVINDQNDIEKTQDYKLPKISDVDALIFLIDLLLCYNDIHPTFFETIEGTIDMNKILDYSTELHEDTALLKFKVVSLWLTLDNSAISLKNPMFKDLFLIMLGVFMSDSNTWIEAKDTLKMFLKNTAIFEADEDEIHILLYTLRHARVNPPSLIGDIIEYVLEKLTDLTEYVRNQLVHFEICDENSAGSLEKLFNDLMHNRNTEDSVFLESKIPSPFIVGCIQYIHLKKDIKKNLKQFLSLYIANLLHSNYSPEMTEVLIGDSKLDVRHYVASWIGQPVPLPDSISQDNVLKCISESVFDCNNDVSLKDIFTFFVETECDEYDFKINNVNYKLDMTVNVDSSELLIWSKYLIYCTVRLTNIGQLTSEQQQKISDYFQCIIAIGRKHHMIDICRTIILTLFKSPQVLKIYKLLDLNKGEASLLATKFMLKIIMEHRDIISYLNEKNKILKSYQQKNYNEIVKALVKINKRKNIVTAHTMDVLEVVGLSKGDDIRVLNEIFNIGVECFVRDDKEPSLALELIRYMIEKYSKIVDSDIEPNILKKCMNLYMELLTNKELSPNLSNLELALIEYLSNKPNQVTNLPDEIFKKIFEINNFRKTTSALAVIMLKYNIKFCKIFKEEIVKPDVLAQRELTLPLGTGLLEHKLFLNENKDLLKTIYEEYKSNIVKFLEKPHKAGQIYVTNWMFIRKLILECMQKEECENLFNKIHKFEILEISHNHLFQTVFLKLCISEGTKKKSILINYFLSMLNLTIISLKEAKDEAGLNQLVNNINTICEISRHIDDFEVENKEEFKKITETTTWQNFCKNVLKDSLKIRTATESNAIGAKLILLLTNLVKLFYPIDHEDITTLFDMVTSHSEFLNVMLSHYSTAIKSRLIYFLYVLITKKKSVMKIQQIPVYLSAYHATRSPCDRLILSILNYFESNGLPVNEYKPYVWGESAANYYAVRKNRSASLWAHPTPNQVLNLFEKEIIERTIKKFPVTQKMDYHYELPSNLDVDDANSSVRNIIDDFFKKTVLESVQIKDTEGAVNSLLIKGKFEKLVETMKRRDVVATSHQDDDESIYDPLFVFPLLSHLLAPGSVASCFKMLRTGLLSVPVVALSSLCPLTRAAAYHVLHRFYLLLETETRHRNDKLFLNDFINTLRKSLATAITSSDEDSDELNGVKNPRVPAVDALYLARGLMVSTAPLDPLYKPINNFLIAKQLVDFTVVPDFLSLFHDSDVESVERRVWILDTIMHGVKTMTDVNVIFKTMCLKMIMDFYTSVLSEKKVKVKIINVLSSIVSVPKSFEILVEGHGLISWLHSVVKTVNKEDGVLVTAIFVLIKNMLYSLSVNGLVKSQAMRNKNVKIYEVAGIKGNRELEFEILILVQDLLKKNDALERQDVAEYLSLYRMFSRITIKFVNKKHVINLVNKMMEILKDSESVKLLSKALLSNDGSVLRSKVFNDADDSLINDLYYVVQCFVC

Uniprot

A0A2W1BM83 A0A2A4IUU5 A0A2H1WIY4 A0A0L7LFE4 A0A194QAL9 A0A194R6G3 + More
A0A2A3ECJ3 A0A067R1B7 A0A0L0CM45 A0A1I8MI42 B0WGV4 A0A1B0G4P4 N6TF99 A0A182IYP6 A0A084WJ27 A0A139WJU6 A0A182VIV8 A0A182K4G6 A0A1B0CVI0

Pubmed

28756777 26227816 26354079 24845553 26108605 25315136 + More
23537049 24438588 18362917 19820115

EMBL

KZ150083 PZC73820.1 NWSH01007571 PCG62903.1 ODYU01008983 SOQ53040.1 + More
JTDY01001350 KOB74104.1 KQ459232 KPJ02479.1 KQ460685 KPJ12830.1 KZ288285 PBC29457.1 KK853099 KDR11374.1 JRES01000195 KNC33413.1 DS231930 EDS27248.1 CCAG010021607 APGK01039879 KB740975 ENN76448.1 ATLV01023967 KE525347 KFB50221.1 KQ971338 KYB28164.1 AJWK01030593

Proteomes

UP000218220 UP000037510 UP000053268 UP000053240 UP000242457 UP000027135 + More
UP000037069 UP000095301 UP000002320 UP000092444 UP000019118 UP000075880 UP000030765 UP000007266 UP000075903 UP000075881 UP000092461

Pfam

PF11707 Npa1 + More
PF16201 NopRA1

Interpro

IPR039844   URB1        + More
IPR032436   NopRA1_C
IPR021714   Npa1_N
IPR016024   ARM-type_fold

SUPFAM

SSF48371 SSF48371

ProteinModelPortal

A0A2W1BM83 A0A2A4IUU5 A0A2H1WIY4 A0A0L7LFE4 A0A194QAL9 A0A194R6G3 + More
A0A2A3ECJ3 A0A067R1B7 A0A0L0CM45 A0A1I8MI42 B0WGV4 A0A1B0G4P4 N6TF99 A0A182IYP6 A0A084WJ27 A0A139WJU6 A0A182VIV8 A0A182K4G6 A0A1B0CVI0

KEGG

101747067 K14861 nucleolar pre-ribosomal-associated protein 1 | (RefSeq) uncharacterized LOC101747067

GO

GO:0000466 GO:0000463 GO:0005730 GO:0005488 GO:0032481 GO:0006183 GO:0006228 GO:0006241 GO:0005856 GO:0007155 GO:0051015 GO:0003779 GO:0016021

PANTHER

PTHR13500

Length:

1981

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

11.18181

Exp number, first 60 AAs:

0

Total prob of N-in:

0.13615

outside

1 - 1981

Pi

248.025143

Theta

224.583621

Tajima's D

0.67563

CLR

0.062681

CSRT

0.565571721413929

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics