Silkworm Genome Informatics Database

Gene

KWMTBOMO01049

Pre Gene Modal

BGIBMGA007400

Annotation

PREDICTED:_stimulator_of_interferon_genes_protein-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr3(+):1131766-1146832 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.017

CDS

ATGGCAGGCTTAAATGAGACTCATATAACATTGTTGAGGGTGCTGTTTGTCTTGGGTATCACAATAGGCTCACAGAATATAGACATGAATCAGGATTGGCTGGCTAATATTGCTCGCTACATCGTTTACTTCATATTGGTTCGCGTGTCGAGGCCCGCCGCCGTAATGGCGTACGACGCGCTGCACAACAATGCGGTTCTAGATTTTTCTAGACTCGTCGAGAAGCAACGGAACACGATCGTTTTGTTCGTCGTTTCCTCACTGGTCCTGTACTATTCGAAATTGAAATTATTCGGGGAGGATTTCGTGTCGCTGTTCGTAGCCTATCTCCTGTTGCACCGCGACGAAAATAACCGGAAGCCGTCAACCGTCACTTATGGAGTGGGGATGGCCTGCAGCTACTTCGAAGGATACTTGAACCACGTGATACCCTCGGACGGCTACAGATTCGTAGGTTTTCAGGAGAACATAAGCAATTACGAGAACTACCACAGCATCGTGTTCCCGGTCAGGAGGTTGTTCGTTGTGATAACGAAGTCCCTGTTCTGCCCGCCGGACCTCAAGTTCTTCAATCGCGAGAACAGGCCGGACCTGCCCTCCCTTGACGCTTGCGAGAGCCTACCAAGGATCACGAAGGACGTGGCCGGCGTCAAGAATAGGGAGTACAAGAACTCTGCGTACATGATACGGAGGCCGGACGGACCGCCGGTATACCTGGCCGTGGAATGCGCCACGCCCATACACACTCTGTACAACGTCGTGAAAAACCGGCAGCTCTATTCAGAAATAGATAACATAGACAAAAAGGAGGTCATAGACGACTTCACGCGCACGCTGACCAACGTTATAGACAAAAGCGAGGACTGTCGCGGTAAATGCGAATTGGTTTACTTCGACACCGATTCGGATAAGTGCCTGGCTGAAGTGCTGCTCGACAAGATACGTGCCATCGAACCGAACTTTGAGAACATCAGCAGGGAACGTGACTAA

Protein

MAGLNETHITLLRVLFVLGITIGSQNIDMNQDWLANIARYIVYFILVRVSRPAAVMAYDALHNNAVLDFSRLVEKQRNTIVLFVVSSLVLYYSKLKLFGEDFVSLFVAYLLLHRDENNRKPSTVTYGVGMACSYFEGYLNHVIPSDGYRFVGFQENISNYENYHSIVFPVRRLFVVITKSLFCPPDLKFFNRENRPDLPSLDACESLPRITKDVAGVKNREYKNSAYMIRRPDGPPVYLAVECATPIHTLYNVVKNRQLYSEIDNIDKKEVIDDFTRTLTNVIDKSEDCRGKCELVYFDTDSDKCLAEVLLDKIRAIEPNFENISRERD

Uniprot

H9JD03 A0A194QAB8 A0A2W1BFD5 A0A2H1WIZ6 A0A2W1BGA0 A0A2A4J1D9 + More
A0A2A4J3F7 A0A2A4J288 A0A2A4J2R6 A0A2A4IUF5

Pubmed

19121390 26354079 28756777

EMBL

BABH01027656 BABH01027657 KQ459232 KPJ02478.1 KZ150083 PZC73819.1 + More
ODYU01008983 SOQ53041.1 PZC73818.1 NWSH01003655 PCG65977.1 PCG65980.1 PCG65979.1 PCG65978.1 NWSH01007571 PCG62904.1

Proteomes

UP000005204 UP000053268 UP000218220

PRIDE

H9JD03

Pfam

PF15009 TMEM173

Interpro

IPR038623 STING_C_sf + More
IPR029158 STING

Gene 3D

3.40.50.12100

ProteinModelPortal

H9JD03 A0A194QAB8 A0A2W1BFD5 A0A2H1WIZ6 A0A2W1BGA0 A0A2A4J1D9 + More
A0A2A4J3F7 A0A2A4J288 A0A2A4J2R6 A0A2A4IUF5

PDB

5CFP E-value=2.41391e-12, Score=173

KEGG

101740268 K12654 transmembrane protein 173 | (RefSeq) stimulator of interferon genes protein-like

GO

GO:0032481 GO:0002218 GO:0016021 GO:0006183 GO:0006228 GO:0006241 GO:0005856 GO:0007155 GO:0051015 GO:0003779

PANTHER

PTHR34339

Length:

329

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

14.00287

Exp number, first 60 AAs:

9.1341

Total prob of N-in:

0.24367

outside

1 - 329

Pi

192.366375

Theta

154.216612

Tajima's D

0.87016

CLR

1.082957

CSRT

0.628768561571921

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics