Gene

KWMTBOMO01048

Pre Gene Modal

BGIBMGA007366

Annotation

PREDICTED:_nucleoporin-like_protein_2_[Amyelois_transitella]

Location

Bomo_Chr3(-):1127567-1129855      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.971

CDS

ATGATTGTTTGCAAGTTCTTCCAGCAAGGCTACTGCCGATACGGCCAAAATTGTAGATTTGAACATGTTTACGGTTCCAAATACACATATCATGCAACAACTCCACAGCCGGTGGTGACTAACACGGAGCACACTGATGAACAACTTGTGAATCAAGTACAGACAGATGTTAAATCAGTACTACACGGAAGCCAATGGATACTCTCGTGTTATGCACCCTACAAGGAGAAGCCGATAATTCCGGGAATTCATGATCTATCACCAGAGGAAATGAGGCTTTTTATATATGAATCGAAAAGAAATAATACTTTAGAACAAGCTATTGCTTACATTAACAACTTAACTAGAGAAACAAGACAGAAATATGAACAATTGCTACAACCAACACCACATTTGATCAAAGTTCTACGATCGATAATGCAATATAAAGAAGGGCAGACTGTGCTGTCTCCTTTCACAGCGACACAATCCGGCAGTGGTGCGGCCACTTCAGTATTCAGGAGTGCAGTCCAAAGTTCTGTTTTCACTCAGAACAATCCAACACCTTCAATTTTCTCACAAAACAACCCACAAAACATGTTTGATAATGGAGCTACAAATAATATGTTTGCACAAAACAGTACACAGTTAGGAATAACGGATGCCGGAGCAAAATCAATATTTGCTCAGGCCAATCAGAATGTATTTGCACAAAATCAAACCAATGTGTTCAGTAATACCAATCAAAACTTACAAAATCCTTCCAACATCTTTGCTAGTGCAAATCAGAATTTGTTTAAACAGAACGACACTCAAGGTTCACCATTTCAATTGAATATCTCGCAGCAAAATATGGATACTAATACCTTCCAAAAGTCAAATACACAACAATCAATTTTTGGACAAAACGTGCCTTCAGTAGAACAGAGTGGTGTTTATAGTAAAATGGAAGAGCTCACACCAGACGATTTGGAAGCATTTAAAAGTGACAAGTTTCAGTTAGGTTTTGTACCTGAAATAGCACCACCCCAAGAGTTATGTAACAATTGA

Protein

MIVCKFFQQGYCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSVLHGSQWILSCYAPYKEKPIIPGIHDLSPEEMRLFIYESKRNNTLEQAIAYINNLTRETRQKYEQLLQPTPHLIKVLRSIMQYKEGQTVLSPFTATQSGSGAATSVFRSAVQSSVFTQNNPTPSIFSQNNPQNMFDNGATNNMFAQNSTQLGITDAGAKSIFAQANQNVFAQNQTNVFSNTNQNLQNPSNIFASANQNLFKQNDTQGSPFQLNISQQNMDTNTFQKSNTQQSIFGQNVPSVEQSGVYSKMEELTPDDLEAFKSDKFQLGFVPEIAPPQELCNN

Uniprot

H9JCW9   A0A2H1WJE8   A0A2A4J1V8   A0A2W1BKK9   A0A194R4T5   A0A0L7L7S8   + More
A0A194QAH6   A0A1E1W857   A0A158NDX6   A0A151X4C8   D6WVA8   A0A1I8NAD8   A0A195C6X9   T1JD43   A0A067RB67   A0A1Y1LCS0   A0A3M7S6L3   A0A195BR98   A0A2J7PTG4   A0A195ERA9   N6TTE5   U4U1G3   A0A195D998   S4PGV7   A0A0J7LA17   A0A069DTB6   A0A2H6N3U7   A0A0A9XKK2   A0A2D4IV87   A0A182TJH7   A0A182KZ37   A0A182HR95   A0A182XGY1  

Pubmed

19121390    28756777    26354079    26227816    21347285    18362917    + More
19820115    25315136    24845553    28004739    30375419    23537049    23622113    26334808    25401762    20966253   

EMBL

BABH01027656    ODYU01008983    SOQ53042.1    NWSH01003655    PCG65981.1    KZ150083    + More
PZC73817.1    KQ460685    KPJ12828.1    JTDY01002448    KOB71394.1    KQ459232    KPJ02477.1    GDQN01008013    JAT83041.1    ADTU01013062    KQ982548    KYQ55285.1    KQ971363    EFA09097.2    KQ978251    KYM95931.1    JH432094    KK852620    KDR20053.1    GEZM01062413    JAV69735.1    REGN01001939    RNA31474.1    KQ976424    KYM88484.1    NEVH01021572    PNF19626.1    KQ981993    KYN30795.1    APGK01019580    APGK01019581    KB740112    ENN81343.1    KB631985    ERL87719.1    KQ981153    KYN08979.1    GAIX01006045    JAA86515.1    LBMM01000160    KMR04693.1    GBGD01002002    JAC86887.1    IACI01044357    LAA23901.1    GBHO01024262    GBHO01024261    GBRD01016782    JAG19342.1    JAG19343.1    JAG49045.1    IACK01130181    LAA88170.1    APCN01001660   

Proteomes

UP000005204    UP000218220    UP000053240    UP000037510    UP000053268    UP000005205    + More
UP000075809    UP000007266    UP000095301    UP000078542    UP000027135    UP000276133    UP000078540    UP000235965    UP000078541    UP000019118    UP000030742    UP000078492    UP000036403    UP000075902    UP000075882    UP000075840    UP000076407   

PRIDE

H9JCW9   

Pfam

PF18044   zf-CCCH_4        + More
PF01826   TIL
PF00094   VWD
PF00754   F5_F8_type_C
PF08742   C8
PF13634   Nucleoporin_FG

Interpro

IPR000571   Znf_CCCH        + More
IPR036855   Znf_CCCH_sf       
IPR041367   Znf-CCCH_4       
IPR002919   TIL_dom       
IPR036084   Ser_inhib-like_sf       
IPR014853   Unchr_dom_Cys-rich       
IPR036508   Chitin-bd_dom_sf       
IPR000421   FA58C       
IPR006207   Cys_knot_C       
IPR013032   EGF-like_CS       
IPR008979   Galactose-bd-like_sf       
IPR001846   VWF_type-D       
IPR001007   VWF_dom       
IPR000742   EGF-like_dom       
IPR002557   Chitin-bd_dom       
IPR025574   Nucleoporin_FG_rpt       

SUPFAM

SSF90229   SSF90229        + More
SSF57567   SSF57567       
SSF49785   SSF49785       
SSF57625   SSF57625       

Gene 3D

2.60.120.260    

CDD

cd00057  FA58C

ProteinModelPortal

H9JCW9   A0A2H1WJE8   A0A2A4J1V8   A0A2W1BKK9   A0A194R4T5   A0A0L7L7S8   + More
A0A194QAH6   A0A1E1W857   A0A158NDX6   A0A151X4C8   D6WVA8   A0A1I8NAD8   A0A195C6X9   T1JD43   A0A067RB67   A0A1Y1LCS0   A0A3M7S6L3   A0A195BR98   A0A2J7PTG4   A0A195ERA9   N6TTE5   U4U1G3   A0A195D998   S4PGV7   A0A0J7LA17   A0A069DTB6   A0A2H6N3U7   A0A0A9XKK2   A0A2D4IV87   A0A182TJH7   A0A182KZ37   A0A182HR95   A0A182XGY1  

KEGG

101739997    K14321 nucleoporin-like protein 2 | (RefSeq) nucleoporin-like protein amo1

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0046872   GO:0005576   GO:0008061   GO:0006030   GO:0016874   GO:0016021   GO:0006165   GO:0006183   GO:0006228   GO:0006241   GO:0005856   GO:0007155   GO:0051015   GO:0003779  

Length:

342

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0013

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01180

outside

1  -  342

 

 

Pi

107.347364

Theta

171.7641

Tajima's D

-1.281603

CLR

1829.744887

CSRT

0.0930453477326134

Interpretation

Uncertain