Gene

KWMTBOMO01047  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007399

Annotation

PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr3(+):1121456-1126483      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.239 Mitochondrial   Reliability : 1.206 Nuclear   Reliability : 1.015

CDS

ATGCCAGATATAGAAACTAAAAGAAAAGCAGAGGATGTGTCTCTTGTACCCTCCAAGCGAGTACGGCATGAGATCTCAGTAGTCGGCACCAGAGAAAAGGCAGTTGTTACTTCATCTGTTCCACGAACATCAAACTTGTATGCGCCAATTATGTTGTTGGAAGGACACCAAGGAGAAATTTTCACAGGCAAATTTCATCCTGAAGGCAAACATTTGGCTTCTGCAGGCTTTGACAGACAAATATTAATATGGAATGTGTATGGTCAATGCGAGAATGTGATGGTGATGAAAGGTCACACGGGAGCAATAATGCAGCTTTGCTTCTCACCTGATGGTTCACATTTGTACACTGGAGCTACGGACAATACTGTAGCAGTATGGGACGTACCCACCGGGACTAGAATCAAGAAGTTAAAGGGTCACGCTAACTTTGTGAACTCTGTTTCAGGAGCAAGAAGAGGTCCAGAACTCTTAGTTTCAGCTTCAGATGATAACACCATAAAATTATGGGATGCAAGGAAAAGGAATCCAGTTGCATCGTTTGACAGTTCATATCCAGTCACAAGTGTACTCTTCAATGATACAGCTGAAAAAATTTTATCCAGCGGTGTGGACAATGTCATCAAAATGTGGGATATAAGGAATAATCAGATTTCCTTGAAAATAAAAGGACATACAGACACGGTTACAGGATTATCATTGTCATGGGATGGTGCATATCTCCTGTCCAATTCAATGGATAATACACTCCGTATTTGGGACGTTAGACCGTTTGCACCAACAGAACGCTGTGTCAAATTAATGTCTGGCCACCAACACAACTTTGAGAAAAATCTGCTCAGATGTGCATGGTCTCAGGATGGCTCCAAGGTGTCAGCAGGTTCTTCAGATCGTTTCCTATACGTTTGGGACACAACATCCAGAAGAGTTCTTTACAAATTGCCTGGACACATAGGATCCGTCAATGATGTGGACTTTCATCCAAACGAACCCATAGTGTTATCAGTGTCCAGCGATAAACAGATTTATTTGGGAGAAATTGAAAATTGA

Protein

MPDIETKRKAEDVSLVPSKRVRHEISVVGTREKAVVTSSVPRTSNLYAPIMLLEGHQGEIFTGKFHPEGKHLASAGFDRQILIWNVYGQCENVMVMKGHTGAIMQLCFSPDGSHLYTGATDNTVAVWDVPTGTRIKKLKGHANFVNSVSGARRGPELLVSASDDNTIKLWDARKRNPVASFDSSYPVTSVLFNDTAEKILSSGVDNVIKMWDIRNNQISLKIKGHTDTVTGLSLSWDGAYLLSNSMDNTLRIWDVRPFAPTERCVKLMSGHQHNFEKNLLRCAWSQDGSKVSAGSSDRFLYVWDTTSRRVLYKLPGHIGSVNDVDFHPNEPIVLSVSSDKQIYLGEIEN

Uniprot

H9JD02   A0A194QG98   A0A2W1BLS8   A0A2A4J3K0   A0A194R570   S4P792   + More
A0A2H1VZK5   A0A0L7LAP8   A0A088A190   F4WDB5   A0A195FX31   E2CA00   A0A195AUP8   A0A158NHG5   A0A0L7R5D1   E2AJJ7   A0A151XFA3   A0A1Y1LMA8   A0A195D4D9   A0A195E265   A0A0J7KG09   A0A310SKV9   A0A154P0N6   A0A0C9R3A0   D6WYC4   A0A026WBK9   A0A2P8XYB6   A0A2A3ELZ1   A0A067R8E6   A0A232F8R9   A0A182GEL2   A0A2J7QF61   Q171B6   A0A182K0N9   A0A0F7VK63   A0A182NEF8   A0A2M4AUD4   A0A182IE49   A0A182U516   A0A182X7L8   Q7QG51   A0A182MAV0   A0A182Y5V0   W5J9I0   A0A182V275   A0A182RGE5   A0A084VPG8   T1DTV7   B0W5S6   K1RHY3   A0A182JG78   A0A182VUY4   A0A0B6ZFJ0   A0A182F558   E9I8L8   A0A1S3JSX2   A0A0M9A986   A0A182QWZ5   A0A210QZW6   A0A2T7PFN5   A0A0F7VHH7   A0A0L8G0E7   A0A1Q3F395   E0VDW2   C3Y8A7   A0A1Q3F3Q0   T1JD28   V3ZVT0   A0A034WQ27   A0A0A1WHJ8   K7ITB8   A0A0K8UYI3   A0A1E1XAK9   A0A023GIU2   W8BNV8   A0A293LI61   A0A336LGP0   G3MLA1   A0A131YPB9   A0A1A9Z5R6   A0A1A9V7F4   A0A2R5L899   A0A224YXC1   A0A131XAG6   W4Z7Y6   A0A023FKI0   A0A1B0FF09   A0A2L2YGX3   A0A0M4E8Y4   B7QLK2   A0A0L0CAU3   H0V391   V9L0Y0   A0A1I8PZ03   A0A1B0CTK2   A0A087TYJ8   A0A1A9XTP5   T1PIV8   B4KHF0   A0A1B6D8I5  

Pubmed

19121390    26354079    28756777    23622113    26227816    21719571    + More
20798317    21347285    28004739    18362917    19820115    24508170    30249741    29403074    24845553    28648823    26483478    17510324    12364791    14747013    17210077    25244985    20920257    23761445    24438588    22992520    21282665    28812685    20566863    18563158    23254933    25348373    25830018    20075255    28503490    24495485    22216098    26830274    28797301    28049606    26561354    26108605    21993624    24402279    17994087   

EMBL

BABH01027655    BABH01027656    KQ459232    KPJ02476.1    KZ150083    PZC73816.1    + More
NWSH01003655    PCG65982.1    KQ460685    KPJ12827.1    GAIX01004719    JAA87841.1    ODYU01005428    SOQ46258.1    JTDY01001917    KOB72547.1    GL888086    EGI67842.1    KQ981208    KYN44877.1    GL453916    EFN75237.1    KQ976737    KYM75906.1    ADTU01015804    KQ414652    KOC66087.1    GL440027    EFN66392.1    KQ982194    KYQ59066.1    GEZM01057698    JAV72137.1    KQ976870    KYN07753.1    KQ979763    KYN19233.1    LBMM01007854    KMQ89368.1    KQ764881    OAD54367.1    KQ434792    KZC05486.1    GBYB01002445    JAG72212.1    KQ971356    EFA09115.1    KK107293    QOIP01000005    EZA53348.1    RLU22377.1    PYGN01001171    PSN36976.1    KZ288215    PBC32720.1    KK852670    KDR18801.1    NNAY01000676    OXU27055.1    JXUM01058232    KQ561993    KXJ76961.1    NEVH01015301    PNF27219.1    CH477460    EAT40573.1    LN830716    CFW94225.1    GGFK01011069    MBW44390.1    APCN01004564    AAAB01008839    EAA05903.3    AXCM01006443    ADMH02002089    ETN59399.1    ATLV01015004    KE524999    KFB39862.1    GAMD01000719    JAB00872.1    DS231844    EDS35729.1    JH816298    EKC33826.1    HACG01019741    CEK66606.1    GL761591    EFZ23066.1    KQ435710    KOX79835.1    AXCN02000859    NEDP02001125    OWF54267.1    PZQS01000004    PVD32237.1    LN830660    CFW94169.1    KQ424851    KOF70388.1    GFDL01013077    JAV21968.1    DS235088    EEB11568.1    GG666491    EEN63344.1    GFDL01012896    JAV22149.1    JH432094    KB201612    ESO95628.1    GAKP01003090    GAKP01003089    JAC55863.1    GBXI01015980    JAC98311.1    AAZX01005891    AAZX01008169    GDHF01020701    JAI31613.1    GFAC01002946    JAT96242.1    GBBM01001541    JAC33877.1    GAMC01003735    GAMC01003734    JAC02821.1    GFWV01008448    MAA33177.1    UFQT01000003    SSX17132.1    JO842652    AEO34269.1    GEDV01008175    JAP80382.1    GGLE01001598    MBY05724.1    GFPF01011111    MAA22257.1    GEFH01005064    JAP63517.1    AAGJ04105883    GBBK01002833    JAC21649.1    CCAG010008990    IAAA01020086    LAA07372.1    CP012523    ALC38551.1    ABJB010411549    DS965966    EEC19724.1    JRES01000673    KNC29355.1    AAKN02028604    JW872404    AFP04922.1    AJWK01027747    KK117335    KFM70187.1    KA648701    AFP63330.1    CH933807    EDW11214.1    GEDC01015413    JAS21885.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000053240    UP000037510    UP000005203    + More
UP000007755    UP000078541    UP000008237    UP000078540    UP000005205    UP000053825    UP000000311    UP000075809    UP000078542    UP000078492    UP000036403    UP000076502    UP000007266    UP000053097    UP000279307    UP000245037    UP000242457    UP000027135    UP000215335    UP000069940    UP000249989    UP000235965    UP000008820    UP000075881    UP000075884    UP000075840    UP000075902    UP000076407    UP000007062    UP000075883    UP000076408    UP000000673    UP000075903    UP000075900    UP000030765    UP000002320    UP000005408    UP000075880    UP000075920    UP000069272    UP000085678    UP000053105    UP000075886    UP000242188    UP000245119    UP000053454    UP000009046    UP000001554    UP000030746    UP000002358    UP000092445    UP000078200    UP000007110    UP000092444    UP000092553    UP000001555    UP000037069    UP000005447    UP000095300    UP000092461    UP000054359    UP000092443    UP000009192   

PRIDE

H9JD02   

Pfam

PF00400   WD40

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR020472   G-protein_beta_WD-40_rep       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JD02   A0A194QG98   A0A2W1BLS8   A0A2A4J3K0   A0A194R570   S4P792   + More
A0A2H1VZK5   A0A0L7LAP8   A0A088A190   F4WDB5   A0A195FX31   E2CA00   A0A195AUP8   A0A158NHG5   A0A0L7R5D1   E2AJJ7   A0A151XFA3   A0A1Y1LMA8   A0A195D4D9   A0A195E265   A0A0J7KG09   A0A310SKV9   A0A154P0N6   A0A0C9R3A0   D6WYC4   A0A026WBK9   A0A2P8XYB6   A0A2A3ELZ1   A0A067R8E6   A0A232F8R9   A0A182GEL2   A0A2J7QF61   Q171B6   A0A182K0N9   A0A0F7VK63   A0A182NEF8   A0A2M4AUD4   A0A182IE49   A0A182U516   A0A182X7L8   Q7QG51   A0A182MAV0   A0A182Y5V0   W5J9I0   A0A182V275   A0A182RGE5   A0A084VPG8   T1DTV7   B0W5S6   K1RHY3   A0A182JG78   A0A182VUY4   A0A0B6ZFJ0   A0A182F558   E9I8L8   A0A1S3JSX2   A0A0M9A986   A0A182QWZ5   A0A210QZW6   A0A2T7PFN5   A0A0F7VHH7   A0A0L8G0E7   A0A1Q3F395   E0VDW2   C3Y8A7   A0A1Q3F3Q0   T1JD28   V3ZVT0   A0A034WQ27   A0A0A1WHJ8   K7ITB8   A0A0K8UYI3   A0A1E1XAK9   A0A023GIU2   W8BNV8   A0A293LI61   A0A336LGP0   G3MLA1   A0A131YPB9   A0A1A9Z5R6   A0A1A9V7F4   A0A2R5L899   A0A224YXC1   A0A131XAG6   W4Z7Y6   A0A023FKI0   A0A1B0FF09   A0A2L2YGX3   A0A0M4E8Y4   B7QLK2   A0A0L0CAU3   H0V391   V9L0Y0   A0A1I8PZ03   A0A1B0CTK2   A0A087TYJ8   A0A1A9XTP5   T1PIV8   B4KHF0   A0A1B6D8I5  

PDB

6QX9     E-value=7.09963e-131,     Score=1196

KEGG

101740129    K12857 Prp8 binding protein | (RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0016905   GO:0071007   GO:0005829   GO:0016607   GO:0005515   GO:0006165   GO:0006183   GO:0006228   GO:0006241   GO:0005856   GO:0007155   GO:0051015   GO:0003779   GO:0016021  

Length:

349

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01042

Exp number, first 60 AAs:

0.00153

Total prob of N-in:

0.04842

outside

1  -  349

 

 

Pi

272.666915

Theta

192.191418

Tajima's D

0.596005

CLR

1.463347

CSRT

0.545322733863307

Interpretation

Uncertain