SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01044
Annotation
PREDICTED:_uncharacterized_protein_LOC106115416_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 4.535
 

Sequence

CDS
ATGTCATCAGTCCCAAAGATTTGTTCTGGATGTAAAAATAAACTTTCTAGGAAGGAATACATGATATGCTCCGCATGTGGCTTAGGTTATGATTTGTTATGTGCTAATATAACACCTAAATCTTACTTTCTTATGGATCAAGACCGTAAGAATAACTGGAGTTGTCAGGAATGTCGTAATAAGATACCGAAATCTGACAACACAAATACTCCTGCTAGAGCAGTGAGTCGATCCGCCACTTCTGATGAAGATAACGGTCTTGGAGAAGAAAGAAATATTACTTTGCGAACAAAAAAACAGAGCTCGAAATGTGGCAGCGATGGATCCTACGTTACTGAAGGACATTTACGCATCATTATTAAACAGGAGATAACAAAAACTATCAAACAACTAGTTTCTGAACACTTATCGAATATTTCCCAACAAATAGCTGACTTCCACGAATCCTTAACATTTTTTAATAAACAATACGAGGAACTCAAGCAAATGGTAAGCGAGAGGGACGATACAATTTCTGATTTAGTTTCTAAAAACAATAATTTAACAATACAAGTGAAGAATTTGACAAATAGACTGGGGCAAGTAGAACAAAGCATGCGTTCCCCAAATATTGAGATCAATGGTATCCCTGAAAATAAATCAGAAAATTTAATAACGACTATTGAGCAGCTGGGTAGAATTGTCGGAAATCCTTTTGGCGACAGCGACATTCTCCACGTAACACGTATTGCCAAACTTAATAAGGAGAATGACCGTCCTCGCTCCGTGATTATTAAACTACGTAGTCAGCGCCGTCGCGATGAGTTGCTGGCTGCAGTTACTAAGTTCAATAAGAAGAATTTAGACAACAAATTGAATTCAGAGCATCTAGGAATCGGGGGACGTCGTGTGCCAGTATTTGTATCTGAGCATCTAACGCCGATAAATAAACACTTACATGCGGCCGCTCGTAAGAAGACAAAAGATACTGGTTTTAAGTTTATATGGGTGAGGGATGGTAAAGTTTTCGTAAGGAAAAATGAGCAGAGTCACGTTATATATATTAAAGACGAAGAAAGCTTAAAATTAATTGCCTAG
Protein
MSSVPKICSGCKNKLSRKEYMICSACGLGYDLLCANITPKSYFLMDQDRKNNWSCQECRNKIPKSDNTNTPARAVSRSATSDEDNGLGEERNITLRTKKQSSKCGSDGSYVTEGHLRIIIKQEITKTIKQLVSEHLSNISQQIADFHESLTFFNKQYEELKQMVSERDDTISDLVSKNNNLTIQVKNLTNRLGQVEQSMRSPNIEINGIPENKSENLITTIEQLGRIVGNPFGDSDILHVTRIAKLNKENDRPRSVIIKLRSQRRRDELLAAVTKFNKKNLDNKLNSEHLGIGGRRVPVFVSEHLTPINKHLHAAARKKTKDTGFKFIWVRDGKVFVRKNEQSHVIYIKDEESLKLIA

Summary

EMBL
KQ459054    KPJ03878.1    NWSH01007173    PCG63054.1    JTDY01001361    KOB74078.1    + More
JTDY01003535    KOB69383.1    JTDY01001411    KOB73935.1    JTDY01014577    KOB52017.1    JTDY01010989    KOB57787.1    NWSH01002032    PCG69366.1    ODYU01004037    SOQ43507.1    ODYU01012049    SOQ58146.1    JTDY01007401    KOB65231.1    NWSH01005479    PCG64170.1    ODYU01003592    SOQ42557.1    KZ149914    PZC78000.1    ODYU01007238    SOQ49844.1    ODYU01007128    SOQ49629.1    ODYU01006462    SOQ48321.1    NWSH01007563    PCG62908.1    ODYU01000349    SOQ34960.1    JTDY01012405    KOB52279.1    NWSH01005418    PCG64228.1    JTDY01005451    KOB66988.1    JTDY01013334    JTDY01001687    KOB52155.1    KOB73157.1    JTDY01000136    KOB78669.1    ODYU01002971    SOQ41143.1    JTDY01015497    JTDY01002687    KOB51945.1    KOB70917.1    JTDY01003264    KOB69846.1    JTDY01002226    KOB71853.1    JTDY01001455    KOB73826.1    JTDY01015045    KOB51976.1    NWSH01003975    PCG65605.1    JTDY01007036    KOB65506.1    ODYU01008832    SOQ52780.1    GDQN01004260    JAT86794.1    KZ150150    PZC72841.1    JTDY01001653    KOB73242.1    NWSH01000638    PCG75103.1    GBHO01033077    JAG10527.1    KZ149908    PZC78213.1    ODYU01012701    SOQ59142.1    GBHO01009395    JAG34209.1    BABH01013843    GEZM01021253    JAV89053.1    ODYU01001291    SOQ37301.1    KZ150197    PZC72320.1    NWSH01005158    PCG64392.1    JTDY01013395    KOB52145.1    GEZM01055774    GEZM01055773    JAV72944.1   
Pfam
PF03258   Baculo_FP        + More
PF00628   PHD
PF14529   Exo_endo_phos_2
Interpro
IPR011011   Znf_FYVE_PHD        + More
IPR019787   Znf_PHD-finger       
IPR013083   Znf_RING/FYVE/PHD       
IPR004244   Transposase_22       
IPR019786   Zinc_finger_PHD-type_CS       
IPR004941   Baculo_FP       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR001965   Znf_PHD       
IPR005135   Endo/exonuclease/phosphatase       
IPR001841   Znf_RING       
IPR002219   PE/DAG-bd       
SUPFAM
SSF57903   SSF57903        + More
SSF56219   SSF56219       
Gene 3D
PDB
2YSM     E-value=0.0366931,     Score=86

Ontologies

Topology

Length:
358
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.75927
Exp number, first 60 AAs:
1.75927
Total prob of N-in:
0.09373
outside
1  -  358
 
 

Population Genetic Test Statistics

Pi
278.92754
Theta
198.381999
Tajima's D
1.368651
CLR
0.60094
CSRT
0.749912504374781
Interpretation
Possibly Positive selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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