SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01034
Pre Gene Modal
BGIBMGA007372
Annotation
PREDICTED:_ring_canal_kelch_homolog_[Bombyx_mori]
Location
Bomo_Chr3(-):515826-530545      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 1.138
 

Sequence

CDS
ATGGAAGGAAACGCTGATGGCGACAGAGAAAGAGCCATCTTAGCAGTTGATAACGGAGCAGCAGAAGGTGATGGAGACAGAGGAAGGTATAGCATGATGGTACGTTGTGCATCACAGTCATCTCTAGATGAGTCATCACAGCGGCCTGCCACCACTGAAAATACTATTGGAGGAGCTCAACATGCATCAAAGTTGCTTGAGGCCTTAGCGAGGTTGAGACAAGATGCAACACTCTGTGATGTTCGGATACAGGCCCAAGCGGAATGCGACAGCGAGCCATCCGAAGGCGTATGGGCTCATCGCGCGGTATTGGCGGCTTCATCGCCCTACTTCCACGCTATGTTCACACAGTTCGACGAAAGAACACAACCCACTGTCACTATACAGAATGTAGAGCCCCAAGCCTTAGAAGCCATCATCGAATACATTTACAAACCAGACTCACTGGTCATCACCGAAGATAATGTACAGAGCGTGCTGTCGGCGGCGTCGCTGCTGCAGGCGGGCGGGGTGCGCGAGGCGTGCTGCTCGTTCCTGGCGAGCGTGCTGTCCCCGGACAACGCGCTCGGCATCCGCGCCTTCGCCGACCTGCACGTGTGCGCCGACCTCGCCGTCTGCGCCGCCAGATACCTCGACGCGCACTTCCTCGAGGTGTTGGAAACAGAAGAGTTTTTGGCTTTAGCGCCGGACACACTCGCTCAACTACTAGACAGCGACCGCATCACTGTACCAAACGAAGAAGTAATATTAGATGCAGTACTAAGATGGATGCAGCATGATGCCGAGTCTCGTCAGCAACATTTGGGCATGCTGCTGGAGCACGTGCGGCTGCCGCTGCTGGCCCAGGATGCCCTGGTCGCGAGGGCTAACGCAGAACCATTGGCCAGCGCCGGGCTAAGGGTCAAGGATCTGGTGATCGAGGCGCTGTCCTTCCACCTGATGCGGCCCGAGCACCGCGCCGCCGCCGCGCAGGCCAGCGCGCGCGCCCGGCCTCGACAGCCGCCGCGCTCGCCCAAGATGCTGCTAGTAGTCGGCGGACAGGCACCGAAGGCCATCCGCGACGTGGAGGCCTACCATCTTGAGTGTGGTCGGTGGAGACCCTGCGCAGAGCTACTCACGAGGAGGTGTAGGGCTGGCCTGGCCGTGCTCCACGGGAAGGTCTATGCTATTGGTGGTTTTAATGGCACCCTGCGCGTCCGCAGCGTGGACGTGTACGACGTGTGCGCGGACGCGTGGGCGAGCGGGCCCGCGCTCACGGCGCGCCGCTCCACGCTGGGGGTGGCCGTGCTGGGGAACCTCATCTACGCGGTCGGCGGATTTGACGGAGCTACGGGCCTAAATTCGGCGGAGGTGCTGGACCCTCGCGAGGGTGTCTGGAGAACTATCGCCTCCATGTCCACACGCCGATCCTCTGTAGGGGTCGCCGTGTTGGAGGGGAAACTGTATGCCGTCGGAGGGTACGATGGAGCTTCTAGACAGTGCTTGCAAACTGTCGAAAGGTACGATCCGTGCTCGGATTCATGGGAGATGGTGGGCGAGATGTCGGCCCGTCGGTCCGGCTGCGGCGTGGGGGTGGTGGAGGGGGCGCTGTACGCGGTGGGGGGCCACGACGGGCCAGCCGTCCGCCGGTCCGTAGAGCGGTACCGTCCCGCCACGGGCTGGGCGCCCGCGCCCCCCATGCATACGGCGCGCAGAAACGCCGCCGTGGCCATGCACGCAGGGAAGTTGTATGTCGTGGGGGGCGACGACGGTGCTGCCAATTTGGATACAGTTGAGGTGTTCGACCCGGCCACGGACACGTGGACCCTGCTCCCGGGCAGCATGTCCGTGGGCCGCTCGTACGCCGGCGTGGCCGTGCCCAGCTACGCCAACGTGGCCATGTTCGGCAGCTCCGCGGGGGCGGGGACTCGCTGGAGGCCGGTCTACCTGCACAGGACCCTCAGGTCTGACGCCAACTCGGAGAATTTGTACGAAAGTGTTAACGTGGGGGGTGCGAATGGGGTCGGGGGAGTCGGCGGCTTGGGGGCTGTCGCGGGAACTAGCGGCCTGGGACCCGGGGGCGGCGTTAGCGGCCTGGGACCCGTGGGGGGAATGGGAGCCTATGTGTGGTGGAGGATGGGCGGATGTCGCAGACACGCTCGGGCCTCACAGACCTTGGAATTTAACGAGAGAGCGGTCGTCAGGATGCCACAACTTGACAATAATCAGAGCACGATGCCGCGGGGCGCGGGGGGCGGCGCGGGGGGCGGCGCGGCGGGGGGCCGGGCGGCGCTGCGGGGCGCGGCGTCGTGCGGCGCCGTGGACGTGGAGCTGCCGTGCGTGGTGCTGGTGCAGCGCTGCGCCCCCACGCCCTACCACGTGCTGCCAGAGAGCCAGCGCGCGCACGCGCACCCCGCGCAGCCGTCAAACCGCGAGTGCTGCGAAGCGGACGCCCTCGAGCCCAGCTCCTCCAGCGAGTCGGCGGACGAGGAGCGCCCCCCGCGCCCCCGCGACCCCCCCGCGCGGGACAACGTGCGCGCCCTCCAGCGGTTCAACCTCATGGACAACCGGGAAGTCAGGTCCGACATCATCCGGGACATCGCCCGGGGCGTGGTGTACCGGGACAGCTCCCGGGACTGCATGCAGGAGGACTCCGACTCGTCCGACTAG
Protein
MEGNADGDRERAILAVDNGAAEGDGDRGRYSMMVRCASQSSLDESSQRPATTENTIGGAQHASKLLEALARLRQDATLCDVRIQAQAECDSEPSEGVWAHRAVLAASSPYFHAMFTQFDERTQPTVTIQNVEPQALEAIIEYIYKPDSLVITEDNVQSVLSAASLLQAGGVREACCSFLASVLSPDNALGIRAFADLHVCADLAVCAARYLDAHFLEVLETEEFLALAPDTLAQLLDSDRITVPNEEVILDAVLRWMQHDAESRQQHLGMLLEHVRLPLLAQDALVARANAEPLASAGLRVKDLVIEALSFHLMRPEHRAAAAQASARARPRQPPRSPKMLLVVGGQAPKAIRDVEAYHLECGRWRPCAELLTRRCRAGLAVLHGKVYAIGGFNGTLRVRSVDVYDVCADAWASGPALTARRSTLGVAVLGNLIYAVGGFDGATGLNSAEVLDPREGVWRTIASMSTRRSSVGVAVLEGKLYAVGGYDGASRQCLQTVERYDPCSDSWEMVGEMSARRSGCGVGVVEGALYAVGGHDGPAVRRSVERYRPATGWAPAPPMHTARRNAAVAMHAGKLYVVGGDDGAANLDTVEVFDPATDTWTLLPGSMSVGRSYAGVAVPSYANVAMFGSSAGAGTRWRPVYLHRTLRSDANSENLYESVNVGGANGVGGVGGLGAVAGTSGLGPGGGVSGLGPVGGMGAYVWWRMGGCRRHARASQTLEFNERAVVRMPQLDNNQSTMPRGAGGGAGGGAAGGRAALRGAASCGAVDVELPCVVLVQRCAPTPYHVLPESQRAHAHPAQPSNRECCEADALEPSSSSESADEERPPRPRDPPARDNVRALQRFNLMDNREVRSDIIRDIARGVVYRDSSRDCMQEDSDSSD

Summary

Uniprot
H9JCX5   A0A212FAW7   A0A026W6H0   Q7PNH6   A0A1S4GY26   A0A1Y1N7J4   + More
Pubmed
19121390    22118469    24508170    12364791    28004739   
EMBL
BABH01027610    BABH01027611    BABH01027612    AGBW02009414    OWR50867.1    KK107373    + More
EZA51645.1    AAAB01008964    EAA12172.4    GEZM01015507    GEZM01015506    JAV91587.1   
Proteomes
UP000005204    UP000007151    UP000053097    UP000007062   
PRIDE
H9JCX5   
Pfam
PF07707   BACK        + More
PF01344   Kelch_1
PF00651   BTB
Interpro
IPR015915   Kelch-typ_b-propeller        + More
IPR011333   SKP1/BTB/POZ_sf       
IPR017096   BTB-kelch_protein       
IPR000210   BTB/POZ_dom       
IPR006652   Kelch_1       
IPR011705   BACK       
SUPFAM
SSF54695   SSF54695        + More
SSF117281   SSF117281       
Gene 3D
2.120.10.80    
ProteinModelPortal
H9JCX5   A0A212FAW7   A0A026W6H0   Q7PNH6   A0A1S4GY26   A0A1Y1N7J4   + More
PDB
5NKP     E-value=4.6459e-97,     Score=908

Ontologies

KEGG
101746655    K10443 kelch-like protein 2/3 | (RefSeq) ring canal kelch homolog
GO
GO:0005515   GO:0005622   GO:0006508   GO:0016020   GO:0007016   GO:0005856   GO:0007155   GO:0051015   GO:0003779   GO:0016021  

Topology

Length:
882
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
8.27694999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00126
outside
1  -  882
 
 

Population Genetic Test Statistics

Pi
220.14275
Theta
173.607735
Tajima's D
0.608389
CLR
0.838568
CSRT
0.548822558872056
Interpretation
Uncertain
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