Silkworm Genome Informatics Database

Gene

KWMTBOMO01020

Pre Gene Modal

BGIBMGA007379

Annotation

PREDICTED:_recQ-mediated_genome_instability_protein_1-like_[Amyelois_transitella]

Location

Bomo_Chr3(-):102615-109415 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.171 Nuclear Reliability : 1.9

CDS

ATGTCTTCTACAAATCTACTGGCGAAGGTTCGAAGTCACTTTGCTACCAATTACATGAATGCCGTCGATGAATGGTTGGAAGACTGTGTGGAATATTTAAGAGCAATACATGGCGATGACGTGAATAAAATACAGGAAGAAGCTAAACAGCAGTGGTTGCTAAATGATTTGGAGGAGGTGTGCACAGGCTCACTGCCAAAAAATATATCTCAAGAACATAATAAAATACTTAATGGAGTTTACCTACTACAAATAAAGTCTGTACAGGATATTGGCACCCCTGCTTATCAACAGTATTTGGAGTTACATAAGGTGAATATGGAAAATGTAGAGGCAACAACAAGACAAGAGGATAAAAGAGCTAATCACAGAATGTTAAAACTTCAACTGACGGATGGGGATCAAGAGCTCTTTGCCATTGAGTACGAACCAATAAGATGTCTGCACTCCAACATGGCACTACAGAGCAAACTGTTGATTAAAGGTCCAGTGACGTGCAGGCGAGGCCACCTGCTGCTGACCGCGGGCTGCACGGGCCCGCCGCCCGCGCGCACACACGAAACAAGAGACGCATTCGAGTGTAACGTCCAACGCGCGGCGCTGCCCGACCCAGCGGAGGGACCGCCGGCCCCCCGCGCCGCGCCGCCGTCGGACCACACCAAGAGACCTCTCCCTGAAACTATTCAAAATCCAGAAAAACGTCTAAAAGTCGACTACGATGATGAAGACTTCATGGCTGCAGAAGATGAGGACCATCTGAGAGAAGTGGAAGTCGGCTGTGACGCGCTGCTTCACAAACATCAATGTGTCGTTCCCGGCGAGCCTTACGTCTATATCAAACAGATCGTGGAGCTGCCCGAAGCGGACAGGGCGGGCAGAGTGTTCACGGTCAAAGCTCTGATCATAAAGCTGCTGCAAAAGCTGACGGTCGGGCGCGACGGCTGGAGCCTCCGCTGCACGCTCGTGGACGGCAGCGGCGCCCTGGACCTGGAGTTCGCCAGCGACGTCTTCTCCGAGCTCATCGGCCTCTCGCCGCACCAGATGTACCGCCTCAAGAAGGAGATGGGTTCCAGGCCAGACCTCCGAGACAAGCTGGATAAGGCGCTACAGAAGGCTAAGGAGAGTCTGCAGGTGCTGTACTGTCTGTTCGAGGTGACGTACGCGGGGGGCGCGGGGGGAGCGGGGGGAGCGCCGCGGGTGAGCGCGCTGCACGCGTACGGGCGCGCGCACGCCGCGCAGCTGGCCCGCCGCGCCCAGCGCGCTGTGTGA

Protein

MSSTNLLAKVRSHFATNYMNAVDEWLEDCVEYLRAIHGDDVNKIQEEAKQQWLLNDLEEVCTGSLPKNISQEHNKILNGVYLLQIKSVQDIGTPAYQQYLELHKVNMENVEATTRQEDKRANHRMLKLQLTDGDQELFAIEYEPIRCLHSNMALQSKLLIKGPVTCRRGHLLLTAGCTGPPPARTHETRDAFECNVQRAALPDPAEGPPAPRAAPPSDHTKRPLPETIQNPEKRLKVDYDDEDFMAAEDEDHLREVEVGCDALLHKHQCVVPGEPYVYIKQIVELPEADRAGRVFTVKALIIKLLQKLTVGRDGWSLRCTLVDGSGALDLEFASDVFSELIGLSPHQMYRLKKEMGSRPDLRDKLDKALQKAKESLQVLYCLFEVTYAGGAGGAGGAPRVSALHAYGRAHAAQLARRAQRAV

Uniprot

A0A060N0T0 A0A0L7KF20 A0A0L7LGK8

Pubmed

24286570 26227816

EMBL

AB766231 BAN29072.1 JTDY01009987 KOB61933.1 JTDY01001272 KOB74331.1 + More

Proteomes

UP000037510

Pfam

PF16099 RMI1_C + More
PF08585 RMI1_N

Interpro

IPR013894   RMI1_N        + More
IPR032199   RMI1_C
IPR033472   DUF1767
IPR039215   RMI1

ProteinModelPortal

A0A060N0T0 A0A0L7KF20 A0A0L7LGK8

PDB

4CHT E-value=7.99855e-18, Score=222

KEGG

101737985 K10990 RecQ-mediated genome instability protein 1 | (RefSeq) RMI1; RecQ mediated genome instability

PATHWAY

03460 Fanconi anemia pathway - Bombyx mori (domestic silkworm)

GO

GO:0000166 GO:0031422 GO:0016579 GO:0006511 GO:0004888 GO:0007016 GO:0005856 GO:0007155 GO:0051015 GO:0003779 GO:0016021

PANTHER

PTHR14790

Length:

422

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.27337

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00926

outside

1 - 422

Pi

2.94623

Theta

35.323029

Tajima's D

-1.409171

CLR

337.709142

CSRT

0.072346382680866

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics