Silkworm Genome Informatics Database

Gene

KWMTBOMO01013

Annotation

TRAS3_protein_[Operophtera_brumata]

Location

Bomo_Chr3(+):6796-8645 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 2.213 Nuclear Reliability : 1.742

CDS

ATGAGTCATCCCGAGGGTCATGGACCAAAAACCACAGCCAGAGCTTCCACAGTCTCTCCTAAACCCAAACCGAAACAAGGCGACGCGAAAAAGTTTTCGGTGCCCCCCCAAACGATTTCGGTTAGGAGGAGCATCGGGGAATGGGAGAAGGCTTCATATACATGCAAATTGGACGAAGCAACAGCATGCGCGGGCAGAGCAAAACAACAGCTCAACGCCGCACGCAACTTGAAAGGGGAGTTAAAAATTGAAGCCTTTAAAATGCTGGATAGGTTACTCGAAATTGTGAAAAAGTTGGAAATGCCCTCGAAAACAAAGGTAGAGAAGGAGGTCATGAAGCAGATGTACCGCGAAAATAGCAAGACAGAAATGGGCACGAGCAACCTGAAAAATATTATTGAGGAGCATAGTAAGGTTTTGGGAGAGACTGTGAAAGAAATGGACCGACTACGCACGGTTATTAGGAGACACGAGGAGAAAATGGATGACACGGCACAAAACGCCGAAAAACGAGATGGGGGACATAGCGGTGGAGAGTTTCTGGCGGAAATCCGTGAGCTCAAGCGACTCACACAAGAGACCCGGGTACGGACCGACGAGGCGCAGGGGGTAATTCCCTCGTACGCGGAGGTCCTGTCTCGGCCACCAGCCGCTAGAGTGGACAAGCCGAAGTTCTCCGTCATCGTGGGTTCAAAAAACGTCATCGATACTAGTGCTGATGTCATAGAAAAGCTGAGAGGGGCGTTAGATGCACGGCGCAGCGGTCTAAAGATAGAGCGTCTCCGTAGGGTACGCGATGCGAAGGTGGTTTTGAGCTGCGCGAGTAAAGAGGAGATGGAAAAGTTGTCCGAGCAGCTAAAGAACGATAAGAACCTTACTGCCGAGGATGGCTGA

Protein

MSHPEGHGPKTTARASTVSPKPKPKQGDAKKFSVPPQTISVRRSIGEWEKASYTCKLDEATACAGRAKQQLNAARNLKGELKIEAFKMLDRLLEIVKKLEMPSKTKVEKEVMKQMYRENSKTEMGTSNLKNIIEEHSKVLGETVKEMDRLRTVIRRHEEKMDDTAQNAEKRDGGHSGGEFLAEIRELKRLTQETRVRTDEAQGVIPSYAEVLSRPPAARVDKPKFSVIVGSKNVIDTSADVIEKLRGALDARRSGLKIERLRRVRDAKVVLSCASKEEMEKLSEQLKNDKNLTAEDG

Uniprot

A0A2A4IZ95 A0A212EIV6 Q9BLI5 Q93138

Pubmed

22118469 11319268 7623845

EMBL

NWSH01005109 PCG64433.1 AGBW02014565 OWR41401.1 AB046668 BAB21511.1 + More
D38414 BAA07466.1

Proteomes

UP000218220 UP000007151

PRIDE

Q9BLI5 Q93138

Pfam

PF14529   Exo_endo_phos_2        + More
PF00075   RNase_H
PF00078   RVT_1

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR012337   RNaseH-like_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR036397   RNaseH_sf
IPR002156   RNaseH_domain

SUPFAM

SSF56219 SSF56219 + More
SSF53098 SSF53098

Gene 3D

3.30.420.10 3.60.10.10

ProteinModelPortal

A0A2A4IZ95 A0A212EIV6 Q9BLI5 Q93138

KEGG

NA

GO

GO:0004523 GO:0003676

Length:

297

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00868

outside

1 - 297

Pi

4.490171

Theta

35.039906

Tajima's D

-1.626277

CLR

0

CSRT

0.0486975651217439

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree