Silkworm Genome Informatics Database

Gene

KWMTBOMO01008

Pre Gene Modal

BGIBMGA009548

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr2(-):8319948-8324671 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.053

CDS

ATGGACGTAGATAGTGAGTGGAAAACGGACGATAAATCGCCGTTTAAGAAGATTGTGTTTGACATAGCTCCAATTAATTCCAGCAATGGATTAGACACAGTGCAATGTTTTTACTGTAGCATAGTTTCGGAAAAAGCAAATTTTTACGACTGGATTGGCGATCAATCCATGTCAAAGAATCACAAGTGTGCGTGTGAACAAGTGAGTACTGTTAAAATATTTATTCGCAGTGAACTAGAAAGGATCTCAGATGGTTCCGTTAAACTCCATACAAAGTATGTGCATTACCTCGCAAATGCGAACAAGCTCAAACAAGGCAAAGGCCCGCTGTGTGAATGCTCAGGACCGTTGTTCGTTCAAGTGATCGCACAAAACGAATTCATTATTCGCGAAAGAATAATATGTACATATTGCAAGAAGATGAGCCGCGTTGAGTTCAGATGCGACACCATCAAACCTATGACCAAAAAGCAAGTCGAGGGACCGTGGACGCCGGCTGCTAGAATAAGTCACACGAAAGAGCAATCTGCAAAAGATAATATTATGAAATATAATAAATCTAGAGGCATTAAAACCGTGGCGTCGCGGGACGCGAACCAAGCGTCACGTGATAACATAATTCCCAACTGGGGTTCACAAAGCGCGGGAATTCGACCGCAGCCAAAACCAAACCAAGAACATCGACCACGAGTAGAACCGAAGCCGACCGCCATACTAACAAGTAACATGTTTTCACCGCTTGCTTTTGATGAGGAAGAACGAGATAGGGAATCTGACGATACCGTCTCAGTATTGAGTGAGGGTGGGGGCACCAAGCGACGACGTGTTCATAAGACACGGGCGGCATCTATTGGTGTCTCACCAGCGTATCTCCCTTTTGACAACATGGGACAAAGCAATGCTCCAAATGGATCAAATAAAAATTTAACGAAGGATACAAGAACAAAGCGTTATCCTCCATTTATATGTGAATATGACACATGGATCACGGATAAAAACGAGTGGAAGACGGCGAATGAAATTGCTCGAGTGAGTAATTGTGAAATACGCGCTAATCCAAAGAGCAAGAAAATAACATTTATTCCAAAAAACAAGGAAGCTTATGAAGCCATACAGAGGCGACTAAATGAAAACCCAGACAAATATAATTACTACACATACGGATGCAAAGACGATCATCGCCCGGCAAAGAAGCTAATAGCTAAAGGGGTCCGCGCCGAAGGTTACACAGAGGAAGAAATCAAAGCCGATATTCTTGCAAGATATGGAATCAAGATGGAACGGGTAATTATTATGAAAAATTCAGCGTTGATTCTCATCTTCCCAGGTGAAACTGACATGCGAGTAGCCCGCGATATAAAGTTTATCTTAAGTCAGCGTGCTACAATCGAGAAATACAAGGTACGAGACACCGCGGTGACACAATGCAAGCGGTGCTGGCAATTTGGTCATGTGCAATCTCATTGCCGGCGTCCAGAGCAACCAGACTCTGTTGAACAACGCGAAGATGGAGATGTGTGGCATGTGTGCTACAACTGTCACGAAATTGGTCATACAGCAAGACAGGCAAAGTGCCCGCTATTCCAGTTAGAAATAAAAAAACAGAAAAACAGGCGACAGGCTTTCGTCAAAAATAATGAAGGACTTACACTACCCACAAAACGTATGATAGAAGCTTCGAATATAAAAGCAGCCCCAGCCACACGGGTCGACAGAACTAGCTATGCAGCAGCAGCAGGTGCCTTAAGTAGCCCTAAAACCACACGCAAGCCCCCTGAGAATGAATCCAAGGCAAAGGCGTTACCTGACTTACTCAGCAAAGCAAAAGAGTTGATGAAAAGTTTTAACAAAATTTACGATACTAGGGCAACTCACCTTGTCACTGCAATGTACATAAAGGAAGGTCTTCGCTGGAATCTAACGACTGCGATTCCAGGCGTGGATGACGTTGATCGTCGTATTGAGGGAGTAGCTATCAGGCTAGAAACAATTGACGGTGGTATCATCGTGCGAGGGTTGTATAATCCACACTTACGTTTCTATCAAATTCGGGCGGACTGGGAAGCTCTGTTAAAAGATAACACCACATCGATTAACGTGGGAGATTTAAATTTGAGAATGCAACAGCTTGGACACTCTCAAACACAAGCCGCAGGTGCGCTGGTGCAGCGGGCCATTGGCAACAGAGAGGCAAAATTGGTGCATACTGGCTTACCATCTCGACCCTGCCATCAAGGAAACGGTATACTCGATGTCGCACTGGTGACACAAGAGGCCATGGAGTACACTTATCGAACGAAGCAACTCGATTCTATCTCGTCAGATCACTATCCGTGGCAATTGGAAGTTGATATAGAGGTGCACGAACATGTGCTACTGAGGCGAAAGATGAACAGCATTACTGAATCTAAGGAGTCTCGCATCAAATTCCAAGAGCTAGTCGAAGCAAATCTTCTAGTAATTGTGCCAACCACTGATGCTGAGGCAGATTCATGCGTCGATAACTTGGAAAATGTACTCACTGCGGCATTAGATGAGATGGCGCCGCTACGAGAGTTAATACGACGAGAGGAACTACCAATAAACATCCAATACATGATACAACATCGCAACCGAAGCAAACTAAAAGCAAAAAATGCACCAAGAGGACATATTCTCCGTCGGATATACAACGCTGCAAAGACCATACTGAAGCAAGCGCTGCAAGAATATCGAGAGACCCAATGGAACAACGTCATTGATAGTCCTGAAAACAACAATGCTAAGATGTGGACTATTCAACGCTCTCTGAAGATCAAGCCTCAGCGTCTACCTGATCTACATGGAGTTGTAACTGAAGAAGAAACAATCAATACTCTGGTTGACACGGCAATAGTAAAAGAAGCAAATGTGGATGACACTCATAAAAATTCTGAGACCTTTACCCCATACCAACCGCTGGCCGAGACCGACGTAGACGAGGTAATACGAGCTCTTCGCCTCTTCAAGAACAAGAAAGCGCCAGGCCCCGATCAACTAAGGGCTGACGCAATAAAACTTGCTGGCCCAGCATATTATACAGCACTGACAAACACAATAAACTACACTCTACGCACAGGATATTATCCAAGCCGATGGAAGCTGGGTGACTGTATCTTCTTACACAAACCAGGCAAACCACATACCGAAGCTGCCTCGTATCGTCCCATTATGTTACTTAACATTATGGGTAAGCTGTGCGAACGAGTTATGTATACCAGAGTTCTCTCAGAAGTGAACCGTTTGCATCTTATCCCAGAATACCAGCACGGTTTTACAAAAAATAAAGGGACTGGTACCCAAATTTTACGAACTGGTAAGGTTATTACAGACGCTTTGGCAGAGGGCAACAGTGTAGCGATGATTTCTACTGATCTCAGTAAAGCTTTCGATTCCATAAATCACGCAGGGCTAAGCAAGAAACTGTTTAACGCTGGAATGGCAAATAATGTAATTAAGCTAATAGAGAATTACCTGAAAAATCGGGAGGCTCGTGGTAAGTACCGAACAATGTATGGAAAAAGGCAGCCGATTCCGCACGGGGTACCACAGGGCTCAATTTTGGGGCCGATCCTCTTCAACTTATACATGAGTGATATCCCCAAGACCCACATCGCAGGTATCACACTCTCACAGTATGCTGATGATCTATGCATCCTGAATGAGGCTAGCCAACCAGATACAGCATCGCGGAGAGCGGCATGGGCTGCTGAGACGATTATAAACTACTACAAGGAATGGGGTCTGCAGTGCAATGTGAGCAAAACGGATTGCATAATGTTTACAAATAAACGCAAATTTAATCGCACCATACAACTTCAACATGAGGCATTACCAATAAAAAGTAACATAAAATATCTTGGAGTGCATCTCGACCAAAGATTAGTGATGAAGGAACATGTAAAAAACACAGTGAAAAAAGTAAAACAAGTGCGTGGAATGCTAGCGCCTATCATAGGATGGTATAGTAAAGTGTCCCTTGAAACAAAACTTAAAGTGATCAAAGCAACTGTTCTACCAATCATTGATTACGGCATTGTACAACTATACCCTAGGGTATGTAAGTCTAAGCTAACTGAATTAGAGAGGCAATATCGAATGGCATTGAAGACAGCAGGTAACTTTCCTCGCAATACGAGTTCAGAAGTAATCTGGGAAATGCTTGATGAGGATCCGTGGTACATACGTGCCAGGGACCTTCATGAAGATATGCTCCGCAAGTTAAAAGATCAGCAAATCCCTGGACTTACACTCCCTGGGAATAAATATGATAAACTGAACCACCATAATCCTATGTTGCCTAGCCTGCGCGCAGGTGAAATCGATTATGTTGACAAAAAAGAAAGAGGCAAACCGCTCTCCAAGCGAACGGTTCCTCCTCGTATTCCTATCCTTTAG

Protein

MDVDSEWKTDDKSPFKKIVFDIAPINSSNGLDTVQCFYCSIVSEKANFYDWIGDQSMSKNHKCACEQVSTVKIFIRSELERISDGSVKLHTKYVHYLANANKLKQGKGPLCECSGPLFVQVIAQNEFIIRERIICTYCKKMSRVEFRCDTIKPMTKKQVEGPWTPAARISHTKEQSAKDNIMKYNKSRGIKTVASRDANQASRDNIIPNWGSQSAGIRPQPKPNQEHRPRVEPKPTAILTSNMFSPLAFDEEERDRESDDTVSVLSEGGGTKRRRVHKTRAASIGVSPAYLPFDNMGQSNAPNGSNKNLTKDTRTKRYPPFICEYDTWITDKNEWKTANEIARVSNCEIRANPKSKKITFIPKNKEAYEAIQRRLNENPDKYNYYTYGCKDDHRPAKKLIAKGVRAEGYTEEEIKADILARYGIKMERVIIMKNSALILIFPGETDMRVARDIKFILSQRATIEKYKVRDTAVTQCKRCWQFGHVQSHCRRPEQPDSVEQREDGDVWHVCYNCHEIGHTARQAKCPLFQLEIKKQKNRRQAFVKNNEGLTLPTKRMIEASNIKAAPATRVDRTSYAAAAGALSSPKTTRKPPENESKAKALPDLLSKAKELMKSFNKIYDTRATHLVTAMYIKEGLRWNLTTAIPGVDDVDRRIEGVAIRLETIDGGIIVRGLYNPHLRFYQIRADWEALLKDNTTSINVGDLNLRMQQLGHSQTQAAGALVQRAIGNREAKLVHTGLPSRPCHQGNGILDVALVTQEAMEYTYRTKQLDSISSDHYPWQLEVDIEVHEHVLLRRKMNSITESKESRIKFQELVEANLLVIVPTTDAEADSCVDNLENVLTAALDEMAPLRELIRREELPINIQYMIQHRNRSKLKAKNAPRGHILRRIYNAAKTILKQALQEYRETQWNNVIDSPENNNAKMWTIQRSLKIKPQRLPDLHGVVTEEETINTLVDTAIVKEANVDDTHKNSETFTPYQPLAETDVDEVIRALRLFKNKKAPGPDQLRADAIKLAGPAYYTALTNTINYTLRTGYYPSRWKLGDCIFLHKPGKPHTEAASYRPIMLLNIMGKLCERVMYTRVLSEVNRLHLIPEYQHGFTKNKGTGTQILRTGKVITDALAEGNSVAMISTDLSKAFDSINHAGLSKKLFNAGMANNVIKLIENYLKNREARGKYRTMYGKRQPIPHGVPQGSILGPILFNLYMSDIPKTHIAGITLSQYADDLCILNEASQPDTASRRAAWAAETIINYYKEWGLQCNVSKTDCIMFTNKRKFNRTIQLQHEALPIKSNIKYLGVHLDQRLVMKEHVKNTVKKVKQVRGMLAPIIGWYSKVSLETKLKVIKATVLPIIDYGIVQLYPRVCKSKLTELERQYRMALKTAGNFPRNTSSEVIWEMLDEDPWYIRARDLHEDMLRKLKDQQIPGLTLPGNKYDKLNHHNPMLPSLRAGEIDYVDKKERGKPLSKRTVPPRIPIL

Uniprot

K7IN67 J9LC21 J9M522 X1WZH0 J9KWJ0

Pubmed

20075255

EMBL

ABLF02036316 ABLF02036319 ABLF02048663 ABLF02066977 ABLF02024246 ABLF02034467 + More
ABLF02021819 ABLF02021820 ABLF02055326

Proteomes

UP000002358 UP000007819

Pfam

PF07530   PRE_C2HC        + More
PF14529   Exo_endo_phos_2
PF00078   RVT_1

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR006579   Pre_C2HC_dom
IPR036691   Endo/exonu/phosph_ase_sf

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

K7IN67 J9LC21 J9M522 X1WZH0 J9KWJ0

PDB

6AR3 E-value=0.000103192, Score=114

KEGG

105842527 no KO assigned | (RefSeq) uncharacterized LOC105842527

GO

GO:0003676 GO:0008270 GO:0006468 GO:0005925 GO:0007016 GO:0005856 GO:0007155 GO:0051015 GO:0003779 GO:0016021

Length:

1471

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01093

Exp number, first 60 AAs:

0.00065

Total prob of N-in:

0.00015

outside

1 - 1471

Pi

250.612419

Theta

189.642376

Tajima's D

1.459675

CLR

62.892159

CSRT

0.774861256937153

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree