Silkworm Genome Informatics Database

Gene

KWMTBOMO01003 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001380

Annotation

PREDICTED:_CLIP-associating_protein-like?_partial_[Papilio_machaon]

Location

Bomo_Chr2(+):8239502-8263416 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.383 Mitochondrial Reliability : 1.461

CDS

ATGGCCCACTACCCCCAGCCTGCGTCGCTAGAAGCGGCCCTCCCCCTGCTCAGCCGGCCCGACCTCCGTCTCCGTCAGCAGCTGGGCGAGCAGCTCGTGGCCCTCGTCCGCCGCGAACCAGAAATAACCAATGATCTGGCCGCCCAACTCATCGATGCTCTTATCGCTTGGCTTAATGGAGGAAACTTTAAGGTGGCCCAAAACGGGCTTGAAGTATTGACAGTGTTAACGGAACGACTCGGCCAAGACTTCTCACACTTCGTGCCTACCGTCTTGCCACATATCATTGACAGGCTAGCGGACACGAAGGAGTGCGTGCGACAGGCGGCCCGCGCGTGCGTCGCGGCGCTGGGGGAGAGCCGAGCGGTGCCCCCCCGCGCGCTGCTGGCCCGCCTCACCCCCGCGCTCTCCCACAAGGCGCCGCACGCCCGCGAGGACGCGCTGCGCTGCATACACACCCTGCTGCACACACACGGCGCCGTGGAGCTACAGCTGCGCGCTGCCGTCCCCAACATCGCGGCGCTGGCGGCCGACCCCAGCGCGGCCGTGCGCGACGCCGCCGTGCAGCTGCTGGCCGACATGTACCGACACGTCGGCGAAAGATTAAGACAGGATTTGAAGAAGAAAGAATTACTGCCGGCGCAGAAGTTGGCTCTGCTAGAACAGAAGTTCGACGAGACGAGAGAGGCTGGGCTCCTACTGCCTTCAGCCGTGCCGGGCACGGACGAGACGGACGCGTGCCGCAGCCGCCGCGCCGCCACCGCGCCCTCCACCGCGCCAGACTCCGGCGCCTCCACGCCAGGTCTGTGTCCCCGCACTAACCCACTGTGA

Protein

MAHYPQPASLEAALPLLSRPDLRLRQQLGEQLVALVRREPEITNDLAAQLIDALIAWLNGGNFKVAQNGLEVLTVLTERLGQDFSHFVPTVLPHIIDRLADTKECVRQAARACVAALGESRAVPPRALLARLTPALSHKAPHAREDALRCIHTLLHTHGAVELQLRAAVPNIAALAADPSAAVRDAAVQLLADMYRHVGERLRQDLKKKELLPAQKLALLEQKFDETREAGLLLPSAVPGTDETDACRSRRAATAPSTAPDSGASTPGLCPRTNPL

Uniprot

A0A2A4K084 A0A2A4K157 A0A2A4K0V9 A0A0N1PJF3 A0A194PTD0 A0A212EPI8 + More
B4HAY8 A0A3B0JTB3 Q29F41 A0A0K8V605 A0A034W6G6

Pubmed

26354079 22118469 17994087 15632085 23185243 25348373 + More

EMBL

NWSH01000296 PCG77657.1 PCG77658.1 PCG77656.1 KQ460296 KPJ16297.1 + More
KQ459593 KPI96676.1 AGBW02013452 OWR43410.1 CH479246 EDW37782.1 OUUW01000009 SPP85354.1 CH379068 EAL31231.1 KRT07473.1 GDHF01024514 GDHF01017957 GDHF01015910 JAI27800.1 JAI34357.1 JAI36404.1 GAKP01009050 GAKP01009048 GAKP01009047 JAC49902.1

Proteomes

UP000218220 UP000053240 UP000053268 UP000007151 UP000008744 UP000268350 + More
UP000001819

Pfam

PF12348 CLASP_N

Interpro

IPR011989   ARM-like        + More
IPR024395   CLASP_N_dom
IPR021133   HEAT_type_2
IPR016024   ARM-type_fold
IPR034085   TOG
IPR028399   CLASP_1

SUPFAM

SSF48371 SSF48371

Gene 3D

1.25.10.10

ProteinModelPortal

A0A2A4K084 A0A2A4K157 A0A2A4K0V9 A0A0N1PJF3 A0A194PTD0 A0A212EPI8 + More
B4HAY8 A0A3B0JTB3 Q29F41 A0A0K8V605 A0A034W6G6

PDB

4G3A E-value=1.11738e-23, Score=270

KEGG

105841715 K16578 CLIP-associating protein 1/2 | (RefSeq) CLIP-associating protein

GO

GO:0005881 GO:0005828 GO:0043515 GO:0051010 GO:0005488 GO:0005576 GO:0016020 GO:0005925 GO:0007016 GO:0005856 GO:0007155 GO:0051015 GO:0003779 GO:0016021

PANTHER

PTHR21567:SF28

Length:

276

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00221

Exp number, first 60 AAs:

0.00131

Total prob of N-in:

0.01409

outside

1 - 276

Pi

260.856375

Theta

152.014362

Tajima's D

2.114176

CLR

0.274744

CSRT

0.900804959752012

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics