Silkworm Genome Informatics Database

Gene

KWMTBOMO00980

Pre Gene Modal

BGIBMGA001365

Annotation

PREDICTED:_uncharacterized_protein_LOC106107297_isoform_X3_[Papilio_polytes]

Location

Bomo_Chr2(+):7812788-7842747 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.735

CDS

ATGTTTTATTTTCCAGCAAGAAAATGTGCTTATATAGCTAAAATCGGAATATTGTTTACATTAGTGATCGCTTTAATAACTTTCTTCGAACAATGGCGAGGCGGTAAACGGTCCGTGGACGCGACTTTTTCTGATCCGATTGAGGCTGAATTTGAAAGACAAATTTTGGAGGATGAAGCCCGAATTATCCCAGGGTTGGGAGACGGGGGTGTTGCGGCATACCTGACCGGGGAAGACAAGCGTCTTGGCGAAGAGTCTGAGAAGAAACTGGCCATGAATGTGCATCTCAGTGATAGGATAGCGTATAACCGTACTTTGAAAGATTACCGTAACCCAGCTTGCCAGCGAGTGGTCTACGATGCAGAGCTCCCCTCTGTGTCTGTCATCCTGATATTCCACAATGAGCCCTATTCAGTCGTCATAAGAACAATATGGAGTGTTATTAACAGTGCCAGGAGAGATCAACCATGGTATTCGAAAGCTAATTTTGTTGAAAGAGGAACAGGCAGAACTATGCAGTTGGGTTACCCGGGTCAAGACCCTACATCATCATTAGTTTACTTAAAGGAGATAATCCTGGTCGACGATAACTCAACTCTACCAGAGCTTAAAGGAAAGCTCAGTTACTACGTAAAGACCCGTCTGCCTCCTGACCTGATAAGGATTTTAAGATTGCCAGATCGGCAGGGTCTGATGAAGGCCCGGCTGGCGGGGGCGAGGGTCGCGAGAGGTGACGTCCTGGTATTCCTGGACGCTCACTGCGAAACGGGCGCCGATTGGCTGCGGCCCCTCTTGCAGAGGATCACGCACAAGAGAGATTCGGTCCTCACTCCGCTCATAGACGTTGTAGACCAGAGCAGCTTCAAGCTGGAGGCTGCTGAATACTTCCAGGTGGGAGGTTTTACCTTCACTGGTCATTTCACCTGGATTGACGTTCCCGAACGCGAGAAGAAACGTCGCGGCTCAGACATCGCGCCGACCTGGTCCCCAACAATGGCAGGGGGTTTGTTTGCCATCAACCGGGCTTACTTTTGGGAGCTGGGCGCCTACGATGAACAGATGGCTGGCTGGGGCGGTGAGAATCTGGAGATGTCGTTCAGGATATGGCAATGCGGTGGAACACTAGAGACGGTTCCATGCTCACGAGTCGGCCACGTCTTCAGGAGTTTCCATCCCTACGGACTGCCCGCCCAAAGCGACACACACGGTATAAACACGGCTAGGATGGCGGAAGTTTGGATGGATGAATACGCTGAGCTGTTCTACTTGCACCGACCGGACCTCAGGAACAACCCGAAGATAGGCGACGTGACCCATCGGAAGGTGCTGCGCGAGAAACTAAAGTGTAAAGACTTCCAGTGGTACCTGGACAACGTCTACGAGGACAAGTTCGTGCCGGTGCGCGACGTCTACGGCTTCGGGCGATTCAAAAACCCCGCGTCCGGGTTCTGTTTGGACACGATGCAGAGGGACGTAGAGGCGTCGTCTCTGGGCGTCTATCCCTGTCACTCCACACTGCAGGCCACTCAGTATCTGTCTCTTTCACTCCGCGGGGAACTCCGGGATGAGGAGAAATGCGCTCAGCTGCAATATACTAGAAGCGAGAATGATGTGAACGATGACACCGCCAGGAGAGTGCTGATGACCAGCTGCCACGGGAAACAAAGGGGCCAGAAATGGAAATACATTCCGTCCACCAGTCAACTCCAGCACGTCGACTCGGGCTTGTGCCTGGACGCGGGCTTCGAGGTCGGAGCAGACGTCACGGCGAGGGCCTGCAGCGGGAAGGTCCAGCAACGTTGGCTGATCGATTACGCGGAGTACAACCAGTTCAAAGGGAAAAACGGTGAGACGAGTGAGAGAGACGAGAAGCTACGAAGATTGAGGGGACAGAGGAGAAAATCTCGCTCGCTGCTATCTCACGAGGGGGACGCGCAGCAACGCTCCCACGAGCACCGCAGCAGGAAGAGGAAACAGAAGAGAAGGAAGAACAAGAGTAAAAAGAAACGCAAGCGCAAGGACAAGTTCATACTGACGCTGCTGCGGAGCCGCCCCGGGGCGCCCGACGAGCACCTGGAGGCCGAGCTGTACTGCCGCCACGCGCGCCTGCACCCCAACAACAGCTTCGTCAGGGACCTCGTTGCCATCCTCAACGATAAGGATGTCAAGGTGATCAACAACGGGCGTCTGTTCGAGCGCGGCGGGGTCACCGTACTCCGGGACGCCGAAATCAAGAAAATGAAGATCAAGAGTCATGACGACATCGATGACGTCACGACCTCAAAACCTAGCCATAAAAAGTTTAAGACAACGCCATCGGTCAAACGCATCCCCGCCGTGAACGTAGCGACGCTGGCGCCCCCCGCCCACCGCGGCAAGCAACTCAACAAGAAGATTATCATTGAAGAGTTCGTGGCCGTCGCACCGGACGAGAAGACCAAGAAACTGAAGAAGCGTAAAAGAAAACACAGAAGACGCACCACGGTCCCCCCCGCCGCGTACGGAGAGGGGGAGGGAGTGCTCGACCATAACACAGAGAGGAACGCACACGCGTCTGTAGAGCTGACGGACGCGCCACCCTCGTCCGCCGAGGACACCCCCATGCTCATGGGGGCCGAGCGGGGCGCCGACAGGAAGGTCAACGAGCTGCTCAGAGACGACAGCCGTGAGAACTGGGACGTGGGTGAGTCTCGCTTCCGGCGGAACAACTCGCAGACGCTGCTGCAGCCGCTGCGGAGGCTCACCACCGACGAGGGCGGCGCCGACAGCGGCGACGAGTCGTCGAAACAAGATGACGTCACGCCTGAGCGGGATGAGGACAGGAAACCGGTCAAGGTCGTGCTCCGCAGCAACCTGACCTTCAACATCGGCGATGATTTCTTCCCGTGGAGACCGAGGGAAGATGAGAAAGACGACACCGCCTCCACAAAAGATGCGAAGGCACAACAGATACAGCTGATCATAAAGCCTAACCCGGGAATACTCGTAGACGACCAGAGGCCCGCCGCTGACGTCAGGAGTGACGTCACGAAAACGTCAAACAAGAGGATTGACAAACACAAGGACCTGTCAAATTATGACAGGAGTCGCATTAGACATGTGTCAGGCGATGGGAATATAGATCAGCGTCAGGAAGACAGCTTCGAGGATGATAACGTGTTGAGGGGTGGCGGCAAGGCGAGCAGCACTACCGATGATAAGTCCGATGGCTCGTCCAGTTCCTCTGAGAGTTGCGATGATTGA

Protein

MFYFPARKCAYIAKIGILFTLVIALITFFEQWRGGKRSVDATFSDPIEAEFERQILEDEARIIPGLGDGGVAAYLTGEDKRLGEESEKKLAMNVHLSDRIAYNRTLKDYRNPACQRVVYDAELPSVSVILIFHNEPYSVVIRTIWSVINSARRDQPWYSKANFVERGTGRTMQLGYPGQDPTSSLVYLKEIILVDDNSTLPELKGKLSYYVKTRLPPDLIRILRLPDRQGLMKARLAGARVARGDVLVFLDAHCETGADWLRPLLQRITHKRDSVLTPLIDVVDQSSFKLEAAEYFQVGGFTFTGHFTWIDVPEREKKRRGSDIAPTWSPTMAGGLFAINRAYFWELGAYDEQMAGWGGENLEMSFRIWQCGGTLETVPCSRVGHVFRSFHPYGLPAQSDTHGINTARMAEVWMDEYAELFYLHRPDLRNNPKIGDVTHRKVLREKLKCKDFQWYLDNVYEDKFVPVRDVYGFGRFKNPASGFCLDTMQRDVEASSLGVYPCHSTLQATQYLSLSLRGELRDEEKCAQLQYTRSENDVNDDTARRVLMTSCHGKQRGQKWKYIPSTSQLQHVDSGLCLDAGFEVGADVTARACSGKVQQRWLIDYAEYNQFKGKNGETSERDEKLRRLRGQRRKSRSLLSHEGDAQQRSHEHRSRKRKQKRRKNKSKKKRKRKDKFILTLLRSRPGAPDEHLEAELYCRHARLHPNNSFVRDLVAILNDKDVKVINNGRLFERGGVTVLRDAEIKKMKIKSHDDIDDVTTSKPSHKKFKTTPSVKRIPAVNVATLAPPAHRGKQLNKKIIIEEFVAVAPDEKTKKLKKRKRKHRRRTTVPPAAYGEGEGVLDHNTERNAHASVELTDAPPSSAEDTPMLMGAERGADRKVNELLRDDSRENWDVGESRFRRNNSQTLLQPLRRLTTDEGGADSGDESSKQDDVTPERDEDRKPVKVVLRSNLTFNIGDDFFPWRPREDEKDDTASTKDAKAQQIQLIIKPNPGILVDDQRPAADVRSDVTKTSNKRIDKHKDLSNYDRSRIRHVSGDGNIDQRQEDSFEDDNVLRGGGKASSTTDDKSDGSSSSSESCDD

Cofactor

Mn(2+)

Similarity

Belongs to the glycosyltransferase 2 family. GalNAc-T subfamily.

Uniprot

H9IVT4

Pubmed

19121390

EMBL

BABH01038060 BABH01038061

Proteomes

UP000005204

PRIDE

H9IVT4

Pfam

PF00652 Ricin_B_lectin + More
PF00535 Glycos_transf_2

Interpro

IPR035992   Ricin_B-like_lectins        + More
IPR000772   Ricin_B_lectin
IPR029044   Nucleotide-diphossugar_trans
IPR001173   Glyco_trans_2-like

SUPFAM

SSF50370 SSF50370 + More
SSF53448 SSF53448

Gene 3D

3.90.550.10

CDD

cd00161 RICIN

ProteinModelPortal

H9IVT4

PDB

1XHB E-value=3.39483e-101, Score=945

KEGG

101736888 K00710 polypeptide N-acetylgalactosaminyltransferase [EC:2.4.1.41] | (RefSeq) putative polypeptide N

PATHWAY

00512 Mucin type O-glycan biosynthesis - Bombyx mori (domestic silkworm)
01100 Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016757 GO:0030246 GO:0006486 GO:0016021 GO:0005794

Length:

1080

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.11641

Exp number, first 60 AAs:

19.95649

Total prob of N-in:

0.98374

POSSIBLE N-term signal

sequence

inside

1 - 11

TMhelix

12 - 29

outside

30 - 1080

Pi

327.253031

Theta

183.741591

Tajima's D

2.66819

CLR

0.053462

CSRT

0.95685215739213

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics