Silkworm Genome Informatics Database

Gene

KWMTBOMO00978

Pre Gene Modal

BGIBMGA001356

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_F09G8.5_[Bombyx_mori]

Location

Bomo_Chr2(-):7750866-7798837 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.156

CDS

ATGCCAAACGTAGAAGTCCTCGCTTTAAGTATCAACAAAATCAGGACGCTGGGCGATTTCGCGGGCTGCCGGCGTCTCCGGGAGCTTTACATCAGGAAAAACGAGATCAGGGAGCTGAACGAAATCCGTCATCTGAGGCATTTACCGGACCTGACCAACCTCTGGCTGGACGAGAACCCCTGCACGCAACATCCCGAGTACAGAATGACGGTGCTGAGGAACCTGCCGAACTTGGAGAAGCTAGACAATGTGCCAGTACAACCGGACGAGGTCCAGGAGGCGATGCGCCGCGGGGCCCACATCCCGGACTCTGACGACGAAGGCTACCCCCAACCGCAAGAAACGTACAGTCAGTACAGACGGCAGAGGTCGTGCGAGTCCAGTCCGGAGCGGGAGTCGGAGCAGTTCTACACCAGACCACCGAACAATAGGCTTGAACAGACCGCCGGCAGCGACAGCTCTGAGGGCGCGGACCAGCTCGAGGCGCAGCGCCTGGACGCACCCCAGTGCCCGATGTCGCCGACGCGTCGCACGACAGTCGCCAGAGTGTCGCCTGATTCTGACGAGCGATACGAGCACCCCGCCATGACGAGATCTCACTATGAACACCGGAGTGGTCCGCGGTCCCCGGACAGCGGCACACTGCGGCACTCCTTCTCGGCACAGTCTGTCAAGGAGTATTCGTATTCGTCTAACGGCGAGTGCAGACAGGGCGCGGGGGGTGCGGGGCCGGCGGGGGGCGTGGTCTCCCCCCCGCACCACTACCACGAGCCGTACTACGAGAAACCGGACAGGTCGGAGTCGTACCAGCAGATGCCGCAGCCCCGGTCTGAGGTGTGGGAGCAGGACAGGTGCAGCGCGCGCGAGCGAGAGTACCCGTCGGCCGTGATGGCGGAGCACAGGGGGTTCACCAGGAGACCGGTCACCAGGAATTCCAATTTACTGTCAGCCGTGCTGTGCCTGGTTAAAGAACTGGATTATCCGAGTCTCGAAGTAGCCGAGATGGCCGTCAGATGCAGAATGGACGAGCTGGCAAACAGCCAGTGA

Protein

MPNVEVLALSINKIRTLGDFAGCRRLRELYIRKNEIRELNEIRHLRHLPDLTNLWLDENPCTQHPEYRMTVLRNLPNLEKLDNVPVQPDEVQEAMRRGAHIPDSDDEGYPQPQETYSQYRRQRSCESSPERESEQFYTRPPNNRLEQTAGSDSSEGADQLEAQRLDAPQCPMSPTRRTTVARVSPDSDERYEHPAMTRSHYEHRSGPRSPDSGTLRHSFSAQSVKEYSYSSNGECRQGAGGAGPAGGVVSPPHHYHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGFTRRPVTRNSNLLSAVLCLVKELDYPSLEVAEMAVRCRMDELANSQ

Uniprot

A0A2W1BES2 A0A194PUD4 A0A194RIH4 A0A1Y1N0M7 A0A1Y1N761 A0A1Y1N218 + More
A0A1W4XJG7 A0A182ILS9 A0A0K2SY03

Pubmed

28756777 26354079 28004739

EMBL

KZ150094 PZC73649.1 KQ459593 KPI96364.1 KQ460152 KPJ17362.1 + More
GEZM01015694 JAV91449.1 GEZM01015696 JAV91447.1 GEZM01015695 JAV91448.1 HACA01001302 CDW18663.1

Proteomes

UP000053268 UP000053240 UP000192223 UP000075880

Pfam

PF12799 LRR_4

Interpro

IPR003603   U2A'_phosphoprotein32A_C        + More
IPR032675   LRR_dom_sf
IPR037390   CFAP410
IPR001611   Leu-rich_rpt
IPR025875   Leu-rich_rpt_4

Gene 3D

3.80.10.10

ProteinModelPortal

A0A2W1BES2 A0A194PUD4 A0A194RIH4 A0A1Y1N0M7 A0A1Y1N761 A0A1Y1N218 + More
A0A1W4XJG7 A0A182ILS9 A0A0K2SY03

PDB

5YXM E-value=2.95074e-08, Score=138

KEGG

101736762 K23456 cilla- and flagella-associated protein | (RefSeq) uncharacterized protein F09G8.5

GO

GO:0016021 GO:0005515 GO:0005622 GO:0005840 GO:0006412 GO:0007275 GO:0004812 GO:0006418 GO:0004887 GO:0003707

PANTHER

PTHR18849:SF0

Length:

348

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00335

outside

1 - 348

Pi

240.593598

Theta

141.670456

Tajima's D

2.202845

CLR

0.011211

CSRT

0.915554222288886

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics