Gene

KWMTBOMO00949

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr2(+):7035476-7036186      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.534 Nuclear   Reliability : 1.537

CDS

ATGTGTATTCTTCCATGCTTACTGTACGGGTGTCAAACTTGGGCGTTGACAGAAGAACTATCAAACAAATTAAAAATTTGTCAAAACGGAATAGAGGGAAGTACAATAGGCGTAAAAAGAAAAGACCGAATAAAACTAAAAGACATAAAGAGCAAGACAAACTTTAAGAACGCATACACAACTTACAAACAGCTAAAATGGCGATGGTCTGGACATATGATCAGAGAGAAAAAGGAGAAATGGACCAGTTTAATAACTGAATGGTATCCACGAGATGGTAAAAGGAATAGAGGTAGACAGACTAAAAGATGGGAGGACGACATTATAAAAATAGCTGGTACTACATGGACGCGTGCAGCAAAGGACAGGACACAGTGGAAATCTTTAGAGGAGGCCTTTGTCGAAGGACAAGCTGCGATACCACAACCACCGTTTGCCGATATTTAA

Protein

MCILPCLLYGCQTWALTEELSNKLKICQNGIEGSTIGVKRKDRIKLKDIKSKTNFKNAYTTYKQLKWRWSGHMIREKKEKWTSLITEWYPRDGKRNRGRQTKRWEDDIIKIAGTTWTRAAKDRTQWKSLEEAFVEGQAAIPQPPFADI

Uniprot

A0A2H1V663   A0A2W1BCS2   A0A2H1W4U6   A0A2W1BSQ8   A0A2W1BDX2   D7F179   + More
A0A2H1VY30   D7F176   A4KWF4   A4KWF2   D7F178   A4KWG0   A0A131YK20   A0A2A4J025   A0A023EXV2   D7F158   D7F157   A0A069DQ34   A0A2H1WM45   D7F165   A0A224XSN7   D7F164   H9JNQ9   D7F159   D7F177   D7F160   A0A224Y0J1   A0A2H1WG43   A0A131Z9K5   W4YXJ1   E2AL50   D7F166   A0A2W1BLC9   A0A2G8JIM1   A0A023EWU8   A0A2W1BGB6   A0A2W1B5F8   A0A2A4J310   A0A069DX96   A0A0P4VWD0   A0A2W1BMB6   A0A0M3HSL8   A0A2G8JFM9   A0A2W1BZV1   A0A2P8YXE9   A0A069DZM5   A0A2G8K8G7   A0A0V0G6F7   A0A0L7LQA3   W4YTY1   A0A016VZE9   A0A016VZ67   A0A0B2VA05   A0A2H1WF27   A0A2G8K4F2   A0A2G8KFR2   A0A016W5P9   A0A2W1BI26   A0A183UMK8   A0A016SG46   A0A016TK11   A0A016W4R1   A0A1E1X2U1   A0A2W5U8K4   A0A016WNU6   A0A1E1XN17   A0A2W1B5M8   A0A2G8L598   A0A016UGZ5   A0A016UGH8   A0A2W1BSC0   W4XMW4   A0A0B2W3Y4   W4YEN5   A0A0B2UUK1   A0A183UG87   A0A3P7G895   A0A183UCP0   A0A0R3Q573   W4YU42   A0A016V419   W4YFQ5   W4YJQ5   W4XDK0   W4YRL2   A0A0K0FAW8   W4XCB7   A0A016S1D2   A0A2H2IR56   A0A183TZB3   A0A2G8L2G5   W4ZHY7   A0A016V557  

Pubmed

28756777    20470440    17360547    26830274    25474469    26334808    + More
19121390    20798317    29023486    27129103    29403074    26227816    25730766    28503490    29209593   

EMBL

ODYU01000693    SOQ35892.1    KZ150485    PZC70710.1    ODYU01006342    SOQ48110.1    + More
KZ149912    PZC78089.1    KZ150108    PZC73382.1    FJ265564    ADI61832.1    ODYU01004982    SOQ45402.1    FJ265561    ADI61829.1    EF113399    EF113400    ABO45233.1    EF113398    EF113401    ABO45231.1    FJ265563    ADI61831.1    EF113402    ABO45239.1    GEDV01010296    JAP78261.1    NWSH01004509    PCG65028.1    GBBI01004876    JAC13836.1    FJ265543    ADI61811.1    FJ265542    ADI61810.1    GBGD01002934    JAC85955.1    ODYU01009605    SOQ54153.1    FJ265550    ADI61818.1    GFTR01005437    JAW10989.1    FJ265549    ADI61817.1    BABH01035234    BABH01035235    FJ265544    ADI61812.1    FJ265562    ADI61830.1    FJ265545    ADI61813.1    GFTR01002495    JAW13931.1    ODYU01008431    SOQ52031.1    GEDV01000518    JAP88039.1    AAGJ04144474    GL440455    EFN65840.1    FJ265551    ADI61819.1    KZ149985    PZC75698.1    MRZV01001865    PIK35593.1    GBBI01004877    JAC13835.1    KZ150065    PZC74169.1    KZ150317    PZC71439.1    NWSH01003335    PCG66527.1    GBGD01000453    JAC88436.1    GDKW01001596    JAI54999.1    KZ150072    PZC74016.1    MRZV01002136    PIK34564.1    KZ149907    PZC78256.1    PYGN01000302    PSN48926.1    GBGD01000380    JAC88509.1    MRZV01000786    PIK44294.1    GECL01002465    JAP03659.1    JTDY01000331    KOB77663.1    AAGJ04012759    JARK01001338    EYC32701.1    EYC32700.1    JPKZ01002136    KHN78309.1    ODYU01008249    SOQ51673.1    MRZV01000899    PIK42833.1    MRZV01000618    PIK46838.1    JARK01000732    EYC35149.1    KZ150147    PZC72867.1    UYWY01020264    VDM41049.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    GFAC01005640    JAT93548.1    QFQQ01000179    PZR20596.1    JARK01000189    EYC40932.1    GFAA01002978    JAU00457.1    KZ150308    PZC71479.1    MRZV01000215    PIK55436.1    JARK01001376    EYC14440.1    EYC14439.1    KZ149953    PZC76544.1    AAGJ04013248    JPKZ01000255    KHN88272.1    AAGJ04035986    JPKZ01003153    KHN73088.1    UYWY01019694    VDM38828.1    UYWY01019463    VDM37564.1    UZAG01000503    VDO08661.1    AAGJ04112537    JARK01001354    EYC21986.1    AAGJ04006812    AAGJ04005502    AAGJ04011852    AAGJ04112759    AAGJ04065374    JARK01001655    EYB84321.1    UYWY01001253    VDM26453.1    MRZV01000248    PIK54443.1    AAGJ04015353    JARK01001352    EYC22819.1   

Proteomes

UP000218220    UP000005204    UP000007110    UP000000311    UP000230750    UP000036681    + More
UP000245037    UP000037510    UP000024635    UP000031036    UP000050794    UP000267007    UP000050602    UP000035680    UP000005237   

PRIDE

D7F179    D7F176    D7F178    D7F158    D7F157    D7F165    + More
D7F164    H9JNQ9    D7F159    D7F177    D7F160    D7F166   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2H1V663   A0A2W1BCS2   A0A2H1W4U6   A0A2W1BSQ8   A0A2W1BDX2   D7F179   + More
A0A2H1VY30   D7F176   A4KWF4   A4KWF2   D7F178   A4KWG0   A0A131YK20   A0A2A4J025   A0A023EXV2   D7F158   D7F157   A0A069DQ34   A0A2H1WM45   D7F165   A0A224XSN7   D7F164   H9JNQ9   D7F159   D7F177   D7F160   A0A224Y0J1   A0A2H1WG43   A0A131Z9K5   W4YXJ1   E2AL50   D7F166   A0A2W1BLC9   A0A2G8JIM1   A0A023EWU8   A0A2W1BGB6   A0A2W1B5F8   A0A2A4J310   A0A069DX96   A0A0P4VWD0   A0A2W1BMB6   A0A0M3HSL8   A0A2G8JFM9   A0A2W1BZV1   A0A2P8YXE9   A0A069DZM5   A0A2G8K8G7   A0A0V0G6F7   A0A0L7LQA3   W4YTY1   A0A016VZE9   A0A016VZ67   A0A0B2VA05   A0A2H1WF27   A0A2G8K4F2   A0A2G8KFR2   A0A016W5P9   A0A2W1BI26   A0A183UMK8   A0A016SG46   A0A016TK11   A0A016W4R1   A0A1E1X2U1   A0A2W5U8K4   A0A016WNU6   A0A1E1XN17   A0A2W1B5M8   A0A2G8L598   A0A016UGZ5   A0A016UGH8   A0A2W1BSC0   W4XMW4   A0A0B2W3Y4   W4YEN5   A0A0B2UUK1   A0A183UG87   A0A3P7G895   A0A183UCP0   A0A0R3Q573   W4YU42   A0A016V419   W4YFQ5   W4YJQ5   W4XDK0   W4YRL2   A0A0K0FAW8   W4XCB7   A0A016S1D2   A0A2H2IR56   A0A183TZB3   A0A2G8L2G5   W4ZHY7   A0A016V557  

KEGG

105842305    no KO assigned | (RefSeq) trypsin beta-like

GO

GO:0003964   GO:0004519  

SignalP

Position:   1 - 15,         Likelihood:  0.597849

 

 

Length:

148

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00016

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.02707

outside

1  -  148

 

 

Pi

187.235554

Theta

78.634146

Tajima's D

4.321055

CLR

0

CSRT

0.999750012499375

Interpretation

Uncertain