Silkworm Genome Informatics Database

Gene

KWMTBOMO00945

Pre Gene Modal

BGIBMGA009639

Annotation

PREDICTED:_uncharacterized_protein_LOC101741035_[Bombyx_mori]

Location

Bomo_Chr2(-):6961597-6966175 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.894

CDS

ATGGATAGGACATTAGGCTACCACAATGGATCTTTAGCGATTTTGGACAAGAAAGAGATAGCGGAGTTCTTAGCTGAAGCATTATCGGAGTCCCAGTTCGATATAGATTCAATATGGGTGGGCGCTAGAAGGGATACGGCAGACGACCCCGAAGGCTACAGATGGGCTCAAGGTGTGGAACTGAAACGGACTGATGCAGACGTCCTTACGAGTGAGCTGGACGGCGATAACCTGCATTATCCGATTTGGGTGAACAGAACCGGAGTGCCAGTGCCCGAGGGAGGAGCAGATTGCGTCGCTCTGGAGAGGGTGCAACACGACAGACCTGTGTTCCTAGATTTACCGTGTGGTATCGAAAGACCGTTCTCTTGTGAAAGAGAAGCGAGAGCTGATATCAGAGTACGGGAGTCGGGCATTGTGAGATGCAGGTCCGGATTGTATCACGTTTACAGTGGTCAAATGGATTGGCATCAAGCAGCTACGCATTGTATTATGAACAAGATGAGCCTGGCAACTATTAACTCGATGAAGTGCTTGAAGAAACTCGGATTGGCCATGCTGAAGGCGAGGCCTAGTGAGTTAATTATGAACTCTATTTTATATGACTCTAAGAACATATTGCAGCGCAGGGTCGACGTGAGGGACTTTTACTGGCAGCGCCTTAGCTGTGCTCTGGCGACTCACAAGAAGTTCTACTAA

Protein

MDRTLGYHNGSLAILDKKEIAEFLAEALSESQFDIDSIWVGARRDTADDPEGYRWAQGVELKRTDADVLTSELDGDNLHYPIWVNRTGVPVPEGGADCVALERVQHDRPVFLDLPCGIERPFSCEREARADIRVRESGIVRCRSGLYHVYSGQMDWHQAATHCIMNKMSLATINSMKCLKKLGLAMLKARPSELIMNSILYDSKNILQRRVDVRDFYWQRLSCALATHKKFY

Similarity

Belongs to the nuclear hormone receptor family.

Uniprot

H9JJD8 A0A194PV66 A0A2H1V666 A0A2A4JEZ4 E2BYW4 A0A232F7H2 + More
K7IP83 A0A1Y1KED3 A0A0C9S145 A0A232F4P2 K7JJK4 E2BFM7 A0A1Y1KSA3 A0A1Y1KVJ4 A0A1Y1MHZ5 A0A1Y1MI73 A0A232FDM2 A0A3L8E3N2 A0A0J7KSN1 E2C4H8

Pubmed

19121390 26354079 20798317 28648823 20075255 28004739 + More
30249741

EMBL

BABH01017862 KQ459593 KPI96649.1 ODYU01000886 SOQ36321.1 NWSH01001622 + More
PCG70665.1 GL451531 EFN79136.1 NNAY01000809 OXU26393.1 GEZM01087427 JAV58701.1 GBYB01014436 JAG84203.1 NNAY01000942 OXU25806.1 GL448037 EFN85549.1 GEZM01075232 JAV64194.1 GEZM01075236 JAV64190.1 GEZM01030705 JAV85412.1 GEZM01030703 JAV85414.1 NNAY01000362 OXU28886.1 QOIP01000001 RLU27297.1 LBMM01003583 KMQ93353.1 GL452471 EFN77162.1

Proteomes

UP000005204 UP000053268 UP000218220 UP000008237 UP000215335 UP000002358 + More
UP000279307 UP000036403

PRIDE

H9JJD8

Pfam

PF00059   Lectin_C        + More
PF00104   Hormone_recep
PF00105   zf-C4
PF00084   Sushi
PF13516   LRR_6
PF12937   F-box-like
PF02949   7tm_6
PF00092   VWA

Interpro

IPR016187   CTDL_fold        + More
IPR001304   C-type_lectin-like
IPR016186   C-type_lectin-like/link_sf
IPR000436   Sushi_SCR_CCP_dom
IPR035976   Sushi/SCR/CCP_sf
IPR001723   Nuclear_hrmn_rcpt
IPR035500   NHR-like_dom_sf
IPR001628   Znf_hrmn_rcpt
IPR000536   Nucl_hrmn_rcpt_lig-bd
IPR013088   Znf_NHR/GATA
IPR036465   vWFA_dom_sf
IPR032675   LRR_dom_sf
IPR006553   Leu-rich_rpt_Cys-con_subtyp
IPR001810   F-box_dom
IPR001611   Leu-rich_rpt
IPR004117   7tm6_olfct_rcpt
IPR002035   VWF_A

SUPFAM

SSF56436   SSF56436        + More
SSF57535   SSF57535
SSF48508   SSF48508
SSF53300   SSF53300

Gene 3D

3.10.100.10 1.10.565.10 3.30.50.10 3.40.50.410 3.80.10.10

CDD

cd00033 CCP

ProteinModelPortal

H9JJD8 A0A194PV66 A0A2H1V666 A0A2A4JEZ4 E2BYW4 A0A232F7H2 + More
K7IP83 A0A1Y1KED3 A0A0C9S145 A0A232F4P2 K7JJK4 E2BFM7 A0A1Y1KSA3 A0A1Y1KVJ4 A0A1Y1MHZ5 A0A1Y1MI73 A0A232FDM2 A0A3L8E3N2 A0A0J7KSN1 E2C4H8

KEGG

101741035 no KO assigned | (RefSeq) uncharacterized LOC101741035

GO

GO:0043565 GO:0003707 GO:0005634 GO:0003700 GO:0008270 GO:0005549 GO:0016021 GO:0007165 GO:0004984

PANTHER

PTHR21137

Subcellular location

Nucleus

Length:

232

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00282

Exp number, first 60 AAs:

0

Total prob of N-in:

0.10918

outside

1 - 232

Pi

351.097951

Theta

196.108364

Tajima's D

2.427945

CLR

0.000631

CSRT

0.938153092345383

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics