Silkworm Genome Informatics Database

Gene

KWMTBOMO00942 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009802

Annotation

PREDICTED:_uncharacterized_protein_CG4449_[Plutella_xylostella]

Location

Bomo_Chr2(+):6899663-6901768 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.15

CDS

ATGAGTTCATCGGATTCAGAAGACGACTGCTACGGGAATGCAGCACAAAAGTTACAACAAATATTATTAAATAAGAAAAAGGAGCATTTAATAACAGACACGTTCAATGATAGTTTCGATCGTTATAATTTGGAGAATCCATTATCAATCAGCGGAAGCCACGTTACGAACACGGATAGGTTAATAAAAGACCACGACTATGTCCAAGTCGTCAAAGAAACTGTGCCAAAGAACAATAAACGTGTTACACGATCTAAAGGGAATGTTGAAGCAGTAATAGTGGATCCAGTAGAGCCGCCATCAAAAAGAACTCGTGCGAAGACCAAAAAGAACTCCGAAGGTACGCAGCAGATTTCACGGACGCCCGAGACCGGCAGAGGTCGCTCAAAAAGAGCTAGGAATATTAGGGGTCGAAATACCAGCAGAGGTCGTGCCAATAGAAGCCGGAGTACTGGTAGAGGTCGGGGCAACTCTCATCGAGAAACTGAAGATATACCGACTTTCAGCATAGGCAACACAGACTACTACCCAGACACATCTCACTCGCAAACATTATTCGTTACCAAACCCAAAGACGTAGTAGTTCTAGACACAGAGGACTTGGACAATGAAGAGCTCTCCGTCAAAGTGTACTGGAAAAGCTCGGAAATATTTAAATTTCAAATAAGAAAATACCAGAAGCTGAAACCGATATTCGATCACTTCGGTAACAAAGAAAACATAAGTAATGAAAAACTTTATTTTACATATAACGATGTTGTAATCAAAATAGATGATTCTCCGGACAGCATAGGTTACAACATCAGCAGGTTTATTGAAGGAGGTATCGTTAATGAGTGCGTTGATACTTTGACTCCGAAACTGGACAATGATATTGTAAATGGCATTAATGTTAAGTTTCAGTGTCAGAATGAGAAAAAACCATTTCAGATTACAATCAGTAAAGATGACACAATGTCATTGGCTATGTTGAAATGTGCAGAACACTTCGAGAAGGTTCTGGAAAAGTTGCTGTTTTATTTTGATGGCGATTTAATATCCGGTAAAAATACACCAAAGGACTTAGAACTAGAAGATGGTGATTGTATAGATGTAAAAATTGTTAGATGA

Protein

MSSSDSEDDCYGNAAQKLQQILLNKKKEHLITDTFNDSFDRYNLENPLSISGSHVTNTDRLIKDHDYVQVVKETVPKNNKRVTRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEGTQQISRTPETGRGRSKRARNIRGRNTSRGRANRSRSTGRGRGNSHRETEDIPTFSIGNTDYYPDTSHSQTLFVTKPKDVVVLDTEDLDNEELSVKVYWKSSEIFKFQIRKYQKLKPIFDHFGNKENISNEKLYFTYNDVVIKIDDSPDSIGYNISRFIEGGIVNECVDTLTPKLDNDIVNGINVKFQCQNEKKPFQITISKDDTMSLAMLKCAEHFEKVLEKLLFYFDGDLISGKNTPKDLELEDGDCIDVKIVR

Uniprot

H9JJV1 B8ZX10

Pubmed

19121390

EMBL

BABH01017856 FM955425 CAW30927.1

Proteomes

UP000005204

PRIDE

H9JJV1

Pfam

PF11976 Rad60-SLD

Interpro

IPR029071   Ubiquitin-like_domsf        + More
IPR022617   Rad60/SUMO-like_dom
IPR000626   Ubiquitin_dom

SUPFAM

SSF54236 SSF54236

ProteinModelPortal

H9JJV1 B8ZX10

PDB

2JXX E-value=8.50374e-06, Score=118

KEGG

101740389 no KO assigned | (RefSeq) uncharacterized protein CG4449

GO

Length:

369

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01446

outside

1 - 369

Pi

289.034047

Theta

194.690988

Tajima's D

1.276951

CLR

0.000003

CSRT

0.732513374331283

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics