SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00934
Pre Gene Modal
BGIBMGA009798
Annotation
segmentation_polarity_homeobox_protein_engrailed_[Bombyx_mori]
Full name
Homeobox protein engrailed-like      
Transcription factor
Location in the cell
Nuclear   Reliability : 4.21
 

Sequence

CDS
ATGGCAACCAGCGACCGGAAGGGAGTGCCCTCCGGTTCACTTCTCATCCATGTGGGGTCTACCATTACTGACAGACCCACACGTCCGACCACGGTGTGGCCACGCCGGCGTACCGGTCCCAGAAGCAGAAGGGTTAAAAAGAAAGCAGCGCCCGAAGAGAAGAGACCACGGACCGCTTTCAGCGGGGCACAACTCGCGAGATTGAAGCACGAGTTCGCCGAGAACCGCTACCTGACTGAGCGGCGGCGTCAGAGCCTCGCGGCGGAGCTGGGCCTCGCCGAGGCGCAGATCAAGATCTGGTTCCAGAACAAACGGGCCAAGATCAAGAAGGCGTCGGGCCAGAGGAACCCGCTGGCGCTGCAGCTCATGGCCCAGGGTCTCTACAACCACAGCACCGTCACGGAGAGCGACGACGAAGAGGAGATCAATGTTACGTAA
Protein
MATSDRKGVPSGSLLIHVGSTITDRPTRPTTVWPRRRTGPRSRRVKKKAAPEEKRPRTAFSGAQLARLKHEFAENRYLTERRRQSLAAELGLAEAQIKIWFQNKRAKIKKASGQRNPLALQLMAQGLYNHSTVTESDDEEEINVT

Summary

Similarity
Belongs to the Engrailed homeobox family.
Pfam
PF00046   Homeodomain        + More
PF10525   Engrail_1_C_sig
Interpro
IPR017970   Homeobox_CS        + More
IPR019549   Homeobox-engrailed_C-terminal       
IPR001356   Homeobox_dom       
IPR000747   Homeobox_engrailed       
IPR019737   Homoebox-engrailed_CS       
IPR009057   Homeobox-like_sf       
IPR000047   HTH_motif       
IPR020479   Homeobox_metazoa       
SUPFAM
SSF46689   SSF46689       
PDB
2JWT     E-value=9.86921e-17,     Score=206

Ontologies

Topology

Subcellular location
Nucleus  
Length:
145
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00375
Exp number, first 60 AAs:
0.00104
Total prob of N-in:
0.24165
outside
1  -  145
 
 

Population Genetic Test Statistics

Pi
285.248563
Theta
146.232606
Tajima's D
3.258015
CLR
0.138863
CSRT
0.988650567471626
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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