Gene

KWMTBOMO00932

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr2(-):6653830-6654902      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.001

CDS

ATGAGACGGACTTGTGAAGGCTGGGATGGTGGAGTTACCATTGGTGGAGTAAAATTGACCAACCTCCGATACGCCGACGACACCAATCTTCTCGCGGCTAATGAAAGCGAGATGGCTGTTCTCATGAGCAAGCTTGAAAAAATTAGCCTCGAACTTGGTCTTGCCATTAACCGATCCAAAACAAAAGTAATGGTAATAGACCGCATGAACAAACTGGAGCACATGGGGTCACTGCATCTTGAAACAACAGAAAGATTCATATACCTGGGCTCCATGATTGCGAATACTGGATCGTGCGAGCCTGAGATTCGAAGACGTATCGGGATAGCAAAAACTGCCATGTCTCAGCTTGATAGCATCTGGTCCGATAGAAACATCTCCATAAAAACCAAGCGTAAACTTGTAACAAGTCTTGTGTTTTCTATTTTCTTATATGGGGCGGAGACATGGACTCTGAAGAAGGCTGATCGAAGTCAGATCGACGCGTTTGAGATGTGGTGCTGGAGGAAAATGCTGCGGATTCCCTGGACGGCGCATCGTACAAACGCATCAATCCTGGAAGAACTAGGCGTCTCCTTAAGACTCTCCACCATTTGCCTACGTAGGATTTTAGAGTTTTTCGGTCACGTTGCGAGAAAAAAGGGTGACAATCTCGAAAGACTTCTCATCACCGGCAAAGTGGAAGGAAAGAGGCCTAGGGGGCGTAGTCCCATGCGCTGGTCCGATCAGATCAAGACGACTTTGGAATCCAGCATCAATGTCGCTATCCACTGCGCGGAGGACAGAAGTGAATGGAAGAACATAGTCCTGACAAAAGTGCTCAGTAAAGGTCACGACCCTCAGAACTGA

Protein

MRRTCEGWDGGVTIGGVKLTNLRYADDTNLLAANESEMAVLMSKLEKISLELGLAINRSKTKVMVIDRMNKLEHMGSLHLETTERFIYLGSMIANTGSCEPEIRRRIGIAKTAMSQLDSIWSDRNISIKTKRKLVTSLVFSIFLYGAETWTLKKADRSQIDAFEMWCWRKMLRIPWTAHRTNASILEELGVSLRLSTICLRRILEFFGHVARKKGDNLERLLITGKVEGKRPRGRSPMRWSDQIKTTLESSINVAIHCAEDRSEWKNIVLTKVLSKGHDPQN

Uniprot

D7F163   A0A2H1VU13   D7F168   D7F172   D7F161   A0A2W1BGD9   + More
D7F162   D7F167   D7F175   D5LB39   A0A2G8JE23   A0A2G8L6P4   A0A2G8JVI4   W5NMM5   A0A1J5WD64   H2YWZ5   A0A2H6KKM9   A0A061BKJ9   W4YPU3   A0A061BKT1   A0A0B7BUR9   O97916   A0A023G885   H3B2Y3   A0A2A4J795   A0A0B7BVD3   A0A146L0Z1   W5PUC3   A0A2G8JVA1   A0A2G8K183   X1D4L4   W4XFH1   W5NGM3   W4YNG7   W4Z5A1   A0A2V9X8L4   D5LB38   H2YWZ6   W5MYT3   W5N9W4   A0A2S2PJ33   W5MW50   A0A0J7KZE8   A0A2S2PMS6   A0A0A9XXL9   A0A0B7BSZ9   A0A2S2QAF2   W4Z133   A0A0B7BVD9   A0A0J7KRQ5   W5MYU0   A0A2B8A3L2   W5NIE2   A0A2S2PZ46   W4Y921   A0A2G8JCI6   A0A0A9WMP5   A0A0P4W0B7   A0A0A9XCF5   A0A0B7BT80   A0A0A9WVQ5   W4XIJ3   W4YB77   A0A146M2R9   A0A2S2QE77   A0A0B7BSB6   A0A146LUY8   A0A2A4JXP9   W5MUQ0   X1XQS0   A0A2G8JCM7   H3J6U9   H3AY06   J9KDM4   W4XHV2   J9LZK0   A0A2S2Q0B1   A0A076N1B6   A0A2J7R4L3   A0A3B3HVR8   A0A2J7RFE8   W5MW18  

Pubmed

20470440    28756777    29023486    27694476    29078748    10555285    + More
9215903    26823975    20809919    24624126    25401762    17554307   

EMBL

FJ265548    ADI61816.1    ODYU01004401    SOQ44236.1    FJ265553    ADI61821.1    + More
FJ265557    ADI61825.1    FJ265546    ADI61814.1    KZ150203    PZC72267.1    FJ265547    ADI61815.1    FJ265552    ADI61820.1    FJ265560    ADI61828.1    GU815090    ADF18553.1    MRZV01002322    PIK33998.1    MRZV01000196    PIK55924.1    MRZV01001207    PIK39730.1    AHAT01022938    MKPU01000878    OIR55924.1    BDSA01000081    GBE63537.1    LK055282    CDR71995.1    AAGJ04055194    LK054988    CDR71535.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    AJ132772    CAA10770.1    GBBM01006298    JAC29120.1    AFYH01119920    NWSH01002736    PCG67606.1    HACG01049245    CEK96110.1    GDHC01017214    JAQ01415.1    AMGL01091659    AMGL01091660    AMGL01091661    AMGL01091662    AMGL01091663    AMGL01091664    AMGL01091665    AMGL01091666    AMGL01091667    AMGL01091668    MRZV01001216    PIK39650.1    MRZV01000994    PIK41715.1    BART01031562    GAH15691.1    AAGJ04075245    AHAT01008485    AAGJ04167631    AAGJ04128321    QIAP01000240    PYX61602.1    GU815089    ADF18552.1    AHAT01017643    AHAT01022314    GGMR01016842    MBY29461.1    AHAT01013219    LBMM01001656    KMQ95932.1    GGMR01018096    MBY30715.1    GBHO01020011    GDHC01013600    JAG23593.1    JAQ05029.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    GGMS01004979    MBY74182.1    AAGJ04171899    HACG01049255    CEK96120.1    LBMM01003995    KMQ92919.1    PDHN01000302    PGH39547.1    AHAT01009145    GGMS01001437    MBY70640.1    AAGJ04161766    MRZV01002544    PIK33458.1    GBHO01034555    JAG09049.1    GDRN01098129    JAI59014.1    GBHO01028834    JAG14770.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    GBHO01033031    GBHO01015473    GBHO01015472    GBHO01015471    GBHO01015469    GBHO01013134    GBHO01013133    GBHO01013129    GBHO01013128    JAG10573.1    JAG28131.1    JAG28132.1    JAG28133.1    JAG28135.1    JAG30470.1    JAG30471.1    JAG30475.1    JAG30476.1    AAGJ04122993    AAGJ04093867    GDHC01004555    JAQ14074.1    GGMS01006790    MBY75993.1    HACG01049249    CEK96114.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    NWSH01000469    PCG76200.1    AHAT01016497    ABLF02038495    MRZV01002526    PIK33493.1    AAGJ04118689    AAGJ04161747    AFYH01053121    ABLF02046942    ABLF02059971    AAGJ04165736    ABLF02042206    GGMS01001369    MBY70572.1    KF881087    AIJ27486.1    NEVH01007405    PNF35773.1    NEVH01004413    PNF39563.1    AHAT01013157    AHAT01013158   

Proteomes

UP000230750    UP000018468    UP000007875    UP000007110    UP000008672    UP000218220    + More
UP000002356    UP000247801    UP000036403    UP000007819    UP000235965    UP000001038   

PRIDE

D7F163    D7F168    D7F172    D7F161    D7F162    D7F167    + More
D7F175    D5LB39    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F163   A0A2H1VU13   D7F168   D7F172   D7F161   A0A2W1BGD9   + More
D7F162   D7F167   D7F175   D5LB39   A0A2G8JE23   A0A2G8L6P4   A0A2G8JVI4   W5NMM5   A0A1J5WD64   H2YWZ5   A0A2H6KKM9   A0A061BKJ9   W4YPU3   A0A061BKT1   A0A0B7BUR9   O97916   A0A023G885   H3B2Y3   A0A2A4J795   A0A0B7BVD3   A0A146L0Z1   W5PUC3   A0A2G8JVA1   A0A2G8K183   X1D4L4   W4XFH1   W5NGM3   W4YNG7   W4Z5A1   A0A2V9X8L4   D5LB38   H2YWZ6   W5MYT3   W5N9W4   A0A2S2PJ33   W5MW50   A0A0J7KZE8   A0A2S2PMS6   A0A0A9XXL9   A0A0B7BSZ9   A0A2S2QAF2   W4Z133   A0A0B7BVD9   A0A0J7KRQ5   W5MYU0   A0A2B8A3L2   W5NIE2   A0A2S2PZ46   W4Y921   A0A2G8JCI6   A0A0A9WMP5   A0A0P4W0B7   A0A0A9XCF5   A0A0B7BT80   A0A0A9WVQ5   W4XIJ3   W4YB77   A0A146M2R9   A0A2S2QE77   A0A0B7BSB6   A0A146LUY8   A0A2A4JXP9   W5MUQ0   X1XQS0   A0A2G8JCM7   H3J6U9   H3AY06   J9KDM4   W4XHV2   J9LZK0   A0A2S2Q0B1   A0A076N1B6   A0A2J7R4L3   A0A3B3HVR8   A0A2J7RFE8   W5MW18  

KEGG

105841345    no KO assigned | (RefSeq) uncharacterized LOC105841345

GO

GO:0003964   GO:0004519   GO:0004197   GO:0006355  

Length:

282

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.63721

Exp number, first 60 AAs:

0.00245

Total prob of N-in:

0.41075

outside

1  -  282

 

 

Pi

319.699137

Theta

172.777039

Tajima's D

2.659689

CLR

12.92772

CSRT

0.958002099895005

Interpretation

Uncertain