Gene

KWMTBOMO00930  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009796

Annotation

PREDICTED:_AP-3_complex_subunit_sigma-2_[Amyelois_transitella]

Location

Bomo_Chr2(+):6533547-6537742      View in EpiBrowser

Full name

AP complex subunit sigma      

Location in the cell

Cytoplasmic   Reliability : 1.551 Nuclear   Reliability : 1.392

CDS

ATGATAAAAGCTATATTAGTCTTCAACAACCATGGGAAGCCACGCCTCTCTAAATTCTACCAATATTTTAATGAAGATATGCAACAGCAAATAATAAAAGAAACATTCCAATTAGTCTCGAAACGTGATGATAATGTGTGCAACTTTCTTGAAGGAGGCAGTCTAATCGGAGGTTCAGACTACAAATTAATATACAGGCACTATGCGACCTTATATTTCGTGTTCTGCGTTGATTCATCAGAGAGTGAACTCGGTATACTAGATCTTATACAGGTATTCGTAGAGACTTTAGATAAATGCTTCGAGAATGTCTGCGAGCTGGACTTGATCTTCCACGCTGATGCGGCCCATCAGGTGCTGGATGAGCTCGTGATGGGAGGCATGGTGCTGCAGACAAACATGGCTGAGATACTCTGCAGGCTTCAGGAGCAGAATAAAATGCAGAAAGCTGAGGCCGGCATATCAGCTGCCCCGGCCAGAGCTGTCTCTGCAGTCAAGAGCATGAACCTACCGCAGCAACTCCGGGACATGAAGCTGCCCGATCTCCCGCAGGCCATCAAGGATCTGAAATTCTGA

Protein

MIKAILVFNNHGKPRLSKFYQYFNEDMQQQIIKETFQLVSKRDDNVCNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHADAAHQVLDELVMGGMVLQTNMAEILCRLQEQNKMQKAEAGISAAPARAVSAVKSMNLPQQLRDMKLPDLPQAIKDLKF

Similarity

Belongs to the adaptor complexes small subunit family.
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.

Uniprot

A0A2A4JFS1   I4DQ01   A0A222AJG8   H9JJU5   A0A2H1W7L4   A0A194PTJ5   + More
A0A212FBI9   A0A0N1IH64   T1E322   A0A1Q3EUI0   A0A182XYZ5   A0A182MGR5   A0A182PQB7   A0A182QGT6   A0A182V982   A0A182JQP2   A0A182WJ52   A0A182U672   A0A182J0D0   Q7QJH7   A0A182I3E4   A0A2M4AQR6   A0A2M4C0U8   W5JEU1   A0A023EJ74   Q17L95   B0X907   A0A182H2N2   A0A1L8DVT1   A0A182R4E1   A0A1B0CH21   A0A182X3M5   D3TPB5   A0A1A9Y1W6   A0A1A9X4H9   A0A1I8N4F6   A0A1I8NZ42   W8BXV5   A0A034W4V2   A0A182NHS1   A0A336LRS8   A0A0K8TSD1   A0A1C7CZ59   A0A195DKR8   A0A195CXN4   F4WQI4   A0A088AA51   E2BYB0   A0A158NNM1   E2A2S4   A0A0A1XAR5   A0A0K8VNR8   A0A0L7R6R8   A0A0L0CDX6   A0A232EQ31   K7JA44   A0A3B0JKN8   Q290C3   B4GCG2   B4MRL9   A0A2D3FB69   A0A1W4UMP9   A0A195B3D3   A0A0M4EWU4   B3MCP0   B4QBF6   B3NQ38   Q9W1E8   B4PAB5   J3JTK8   B4J661   B4MCJ0   U5EVP2   A0A1Y1K4L4   B4KMA9   A0A2H8TET2   A0A2S2NH77   C4WY51   A0A1B6M113   A0A1B6E9B5   E0VQM1   A0A1B6G9J9   A0A220QME0   B4I8Y0   A0A224XTY4   A0A0P4VT89   A0A069DQ42   R4G8L7   A0A084WNF1   A0A0N0BKH2   A0A0A9XY71   A0A224YHR4   A0A131Z6K0   A0A131XPV5   G3MMM9   A0A0C9SD06   A0A023FUX7   A0A226DFS0   B5M734   A0A0B6YB07  

Pubmed

22651552    19121390    26354079    22118469    24330624    25244985    + More
12364791    14747013    17210077    20920257    23761445    24945155    17510324    26483478    20353571    25315136    24495485    25348373    26369729    20966253    21719571    20798317    21347285    25830018    26108605    28648823    20075255    15632085    17994087    22936249    18057021    10954086    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    22516182    23537049    28004739    20566863    28657684    27129103    26334808    24438588    25401762    26823975    28797301    26830274    28049606    22216098    26131772    19320755   

EMBL

NWSH01001637    PCG70616.1    AK403866    BAM19991.1    KY609828    ASO76504.1    + More
BABH01017814    ODYU01006836    SOQ49048.1    KQ459593    KPI96637.1    AGBW02009306    OWR51114.1    KQ460280    KPJ16310.1    GALA01000765    JAA94087.1    GFDL01016129    JAV18916.1    AXCM01000285    AXCN02000377    AXCP01001706    AAAB01008807    EAA04682.2    APCN01000207    GGFK01009803    MBW43124.1    GGFJ01009660    MBW58801.1    ADMH02001422    ETN62596.1    GAPW01004724    JAC08874.1    CH477217    EAT47480.1    DS232513    EDS42913.1    JXUM01023847    KQ560673    KXJ81336.1    GFDF01003555    JAV10529.1    AJWK01011850    EZ423267    ADD19543.1    GAMC01000320    JAC06236.1    GAKP01009797    JAC49155.1    UFQT01000063    SSX19259.1    GDAI01000341    JAI17262.1    KQ980765    KYN13475.1    KQ977141    KYN05420.1    GL888273    EGI63511.1    GL451420    EFN79389.1    ADTU01021659    GL436211    EFN72259.1    GBXI01017224    GBXI01006502    JAC97067.1    JAD07790.1    GDHF01011787    JAI40527.1    KQ414646    KOC66446.1    JRES01000637    KNC29699.1    NNAY01002836    OXU20464.1    AAZX01009034    OUUW01000001    SPP73191.1    CM000071    EAL25439.1    CH479181    EDW32439.1    CH963850    EDW74758.1    KY407552    ATU47258.1    KQ976641    KYM78704.1    CP012524    ALC42637.1    CH902619    EDV36274.1    CM000362    CM002911    EDX08474.1    KMY96193.1    CH954179    EDV56911.1    KQS63091.1    AE013599    AF228056    AY071026    AAF47120.2    AAG43053.1    AAL48648.1    CM000158    EDW92441.1    KRK00520.1    APGK01035159    BT126565    KB740923    KB632326    AEE61529.1    ENN78196.1    ERL92480.1    CH916367    EDW01919.1    CH940659    EDW71378.1    GANO01001787    JAB58084.1    GEZM01097317    JAV54276.1    CH933808    EDW09797.1    GFXV01000003    MBW11808.1    GGMR01003908    MBY16527.1    ABLF02018119    ABLF02018122    AK343023    BAH72821.1    GEBQ01010403    JAT29574.1    GEDC01002769    JAS34529.1    DS235430    EEB15677.1    GECZ01010806    JAS58963.1    KY769578    ASK06163.1    CH480824    EDW57055.1    GFTR01003158    JAW13268.1    GDKW01000772    JAI55823.1    GBGD01003093    JAC85796.1    ACPB03008071    GAHY01000752    JAA76758.1    ATLV01024593    ATLV01024594    KE525352    KFB51745.1    KQ435700    KOX80498.1    GBHO01018735    GDHC01020817    JAG24869.1    JAP97811.1    GFPF01006071    MAA17217.1    GEDV01002157    JAP86400.1    GEFH01000346    JAP68235.1    JO843130    AEO34747.1    GBZX01002132    JAG90608.1    GBBL01002031    JAC25289.1    LNIX01000020    OXA44053.1    EZ000217    ACG76202.1    HACG01006438    CEK53303.1   

Proteomes

UP000218220    UP000005204    UP000053268    UP000007151    UP000053240    UP000076408    + More
UP000075883    UP000075885    UP000075886    UP000075903    UP000075881    UP000075920    UP000075902    UP000075880    UP000007062    UP000075840    UP000000673    UP000008820    UP000002320    UP000069940    UP000249989    UP000075900    UP000092461    UP000076407    UP000092443    UP000091820    UP000095301    UP000095300    UP000075884    UP000075882    UP000078492    UP000078542    UP000007755    UP000005203    UP000008237    UP000005205    UP000000311    UP000053825    UP000037069    UP000215335    UP000002358    UP000268350    UP000001819    UP000008744    UP000007798    UP000192221    UP000078540    UP000092553    UP000007801    UP000000304    UP000008711    UP000000803    UP000002282    UP000019118    UP000030742    UP000001070    UP000008792    UP000009192    UP000007819    UP000009046    UP000001292    UP000015103    UP000030765    UP000053105    UP000198287   

PRIDE

H9JJU5    Q9W1E8   

Pfam

PF01217   Clat_adaptor_s        + More
PF00612   IQ
PF02736   Myosin_N
PF01576   Myosin_tail_1
PF00063   Myosin_head

Interpro

IPR011012   Longin-like_dom_sf        + More
IPR000804   Clathrin_sm-chain_CS       
IPR016635   AP_complex_ssu       
IPR022775   AP_mu_sigma_su       
IPR002928   Myosin_tail       
IPR027417   P-loop_NTPase       
IPR001609   Myosin_head_motor_dom       
IPR004009   Myosin_N       
IPR027401   Myosin_IQ_contain_sf       
IPR000048   IQ_motif_EF-hand-BS       

SUPFAM

SSF64356   SSF64356        + More
SSF52540   SSF52540       

Gene 3D

4.10.270.10    

ProteinModelPortal

A0A2A4JFS1   I4DQ01   A0A222AJG8   H9JJU5   A0A2H1W7L4   A0A194PTJ5   + More
A0A212FBI9   A0A0N1IH64   T1E322   A0A1Q3EUI0   A0A182XYZ5   A0A182MGR5   A0A182PQB7   A0A182QGT6   A0A182V982   A0A182JQP2   A0A182WJ52   A0A182U672   A0A182J0D0   Q7QJH7   A0A182I3E4   A0A2M4AQR6   A0A2M4C0U8   W5JEU1   A0A023EJ74   Q17L95   B0X907   A0A182H2N2   A0A1L8DVT1   A0A182R4E1   A0A1B0CH21   A0A182X3M5   D3TPB5   A0A1A9Y1W6   A0A1A9X4H9   A0A1I8N4F6   A0A1I8NZ42   W8BXV5   A0A034W4V2   A0A182NHS1   A0A336LRS8   A0A0K8TSD1   A0A1C7CZ59   A0A195DKR8   A0A195CXN4   F4WQI4   A0A088AA51   E2BYB0   A0A158NNM1   E2A2S4   A0A0A1XAR5   A0A0K8VNR8   A0A0L7R6R8   A0A0L0CDX6   A0A232EQ31   K7JA44   A0A3B0JKN8   Q290C3   B4GCG2   B4MRL9   A0A2D3FB69   A0A1W4UMP9   A0A195B3D3   A0A0M4EWU4   B3MCP0   B4QBF6   B3NQ38   Q9W1E8   B4PAB5   J3JTK8   B4J661   B4MCJ0   U5EVP2   A0A1Y1K4L4   B4KMA9   A0A2H8TET2   A0A2S2NH77   C4WY51   A0A1B6M113   A0A1B6E9B5   E0VQM1   A0A1B6G9J9   A0A220QME0   B4I8Y0   A0A224XTY4   A0A0P4VT89   A0A069DQ42   R4G8L7   A0A084WNF1   A0A0N0BKH2   A0A0A9XY71   A0A224YHR4   A0A131Z6K0   A0A131XPV5   G3MMM9   A0A0C9SD06   A0A023FUX7   A0A226DFS0   B5M734   A0A0B6YB07  

PDB

4UQI     E-value=4.66176e-24,     Score=271

KEGG

101739762    K12399 AP-3 complex subunit sigma | (RefSeq) AP-3 complex subunit sigma-2

PATHWAY

04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0006886   GO:0030117   GO:0016192   GO:0043231   GO:0006727   GO:0048072   GO:0046907   GO:0006726   GO:0008565   GO:0030123   GO:0007040   GO:0016021   GO:0003774   GO:0003779   GO:0016459   GO:0005524   GO:0016020   GO:0015031   GO:0006810   GO:0006422   GO:0004812   GO:0006418   GO:0004887   GO:0003707  

PANTHER

PTHR11753  

Length:

191

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01988

Exp number, first 60 AAs:

0.00131

Total prob of N-in:

0.08642

outside

1  -  191

 

 

Pi

279.74139

Theta

189.56005

Tajima's D

1.636725

CLR

0.011635

CSRT

0.812159392030398

Interpretation

Uncertain